Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003209

Physical Location & Seq

Genomic Coordinates Reverse (-)

25734144 .. 25735488

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G235100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGCAGCCCTTTGTTCTACGAGTTGAAGAAGCAAGCCTCTTCCTTCTTGAAAGAGAAGATTAAAACTGCTCGCTTGACGCTGACTGATGTAACTCCTGCACAACTAATGACGGAAGAAGCTACAAATGAAAATCCATGCCCGCCAGACACACGCACCATTGGAGTAATATCAAGGGCTGCCTTTGAAGTTGATGATTATTGGAGAATTGTGGAGATTCTACATAAGAGGTTGTTGAGCTTCAATAGAAAGAATTGGAGAGGCTCTTACAAGGCTCTAATTCTATTGGAACACCTGCTAAGCCATGGGCCATTGAGAATTGCGGAGGAGTTTGAGGGTGATAAAGATATTATCAAGGAGATGGGGAGGTTTCAGTATATCGATGAGAAGGGGTTTAACTGGGGATTGAGTGTGAGAAAGTTATCTGAGAGAGTAGTAAAACTTGTTGAAGATGAGGCGTTCTTCAGAGAAGAGAGAGCCAGAGCTCGCAATCTAACATGTGGAATCAAAGGATTCGGGAGCTTCAGCCTGCAGTGTTCTTCTTCCATAGATTCAAGCTTGAAGGACTTGTCCTTCAAAACATATGAGAGATGTAATTCTCACCACAATGACCATCAAAGTTGCAAAAATCGGGCCCTCGGCTCTAACGAGAAATTTTTAATGGAGGAAGAGAAGAAGAAACCAAAGCAAATTGATGGTTACCAGGACATCATCTCAAAACCTGACATGAGTCTTGACATAGAAGATCATCCATTTTGCGAGAGTGAGCATCAGACGGCAGAATCCCTTCTTTCTACTGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

269

Amino Acids

30.93

Weight (kDa)

6.47

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46540 AT3G46540 AT3G46540
fragaria_vesca	FvH4_3g35980 FvH4_3g35980 FvH4_7g22420
malus_domestica	MD01G1133800.v1.1 MD03G1094900.v1.1 MD03G1095100.v1.1 MD11G1110100.v1.1
prunus_persica	Prupe.2G235100_v2.0.a1 Prupe.6G078600_v2.0.a1
pyrus_communis	pycom03g07760 pycom11g09090
rosa_chinensis	RchiOBHm_Chr1g0367051 RchiOBHm_Chr5g0064341
rosa_laevigata	RLG00000027303 RLG00000035718
rosa_multiflora	Rmu_sc0000806.1_g000030 Rmu_sc0002269.1_g000003 Rmu_sc0003467.1_g000023 Rmu_sc0013700.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016660 Rroxscaffold_4G00289670
rosa_rugosa	Rorug01G0334100 Rorug05G0364100
rosa_samantha	Rh1AG341000 Rh1BG301500 Rh1CG317700 Rh1DG333900 Rh5AG422300 Rh5BG438200 Rh5CG460700 Rh5DG451100
rosa_wichuraiana	Rw0G023860 Rw1G030290 Rw5G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	303
AciI	CCGC	2 cut(s)	143, 323
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	2 cut(s)	448, 508
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	8 cut(s)	28, 52, 188, 244, 449, 555, 562, 577
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	5 cut(s)	122, 240, 485, 522, 558
AluI	AGCT	5 cut(s)	122, 240, 485, 522, 558
Alw21I	GWGCWC	1 cut(s)	487
AoxI	GGCC	2 cut(s)	308, 633
ApaI	GGGCCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	6, 179
ApoI	RAATTY	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	786
AspS9I	GGNCC	3 cut(s)	308, 633, 634
AsuHPI	GGTGA	2 cut(s)	350, 593
BaeGI	GKGCMC	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	487, 637
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	18, 166
BccI	CCATC	3 cut(s)	355, 621, 689
BceAI	ACGGC	1 cut(s)	792
BciT130I	CCWGG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	2 cut(s)	7, 180
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	8, 181
Bme1390I	CCNGG	1 cut(s)	704
BmgT120I	GGNCC	3 cut(s)	308, 633, 634
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	704
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	304, 637
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	704
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	304, 637
BseGI	GGATG	1 cut(s)	748
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	18, 166
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	310, 635
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	310, 635
Bsp120I	GGGCCC	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	487, 637
Bsp143I	GATC	1 cut(s)	745
Bsp1720I	GCTNAGC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	143, 323
BspANI	GGCC	2 cut(s)	310, 635
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	635
BspMAI	CTGCAG	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	304, 637
BssMI	GATC	1 cut(s)	745
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	3 cut(s)	46, 465, 663
BstC8I	GCNNGC	5 cut(s)	36, 73, 143, 487, 530
BstDEI	CTNAG	2 cut(s)	299, 426
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	1 cut(s)	748
BstMBI	GATC	1 cut(s)	745
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	501
BstPAI	GACNNNNGTC	1 cut(s)	729
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	702
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	2 cut(s)	18, 166
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	310, 635
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	539
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	5 cut(s)	36, 73, 143, 487, 530
Cfr13I	GGNCC	3 cut(s)	308, 633, 634
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	88
CviAII	CATG	4 cut(s)	138, 305, 498, 727
DdeI	CTNAG	2 cut(s)	299, 426
DpnI	GATC	1 cut(s)	747
DpnII	GATC	1 cut(s)	745
Eam1104I	CTCTTC	3 cut(s)	46, 465, 663
EarI	CTCTTC	3 cut(s)	46, 465, 663
Ecl136II	GAGCTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	487, 637
Eco53kI	GAGCTC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	448, 508
Eco91I	GGTNACC	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	634
EcoO65I	GGTNACC	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	487, 637
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	4 cut(s)	141, 308, 501, 730
FatI	CATG	4 cut(s)	137, 304, 497, 726
FauI	CCCGC	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	7, 180
FokI	GGATG	1 cut(s)	735
FriOI	GRGCYC	2 cut(s)	487, 637
Fsp4HI	GCNGC	2 cut(s)	7, 180
GluI	GCNGC	2 cut(s)	7, 180
HaeIII	GGCC	2 cut(s)	310, 635
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	4 cut(s)	141, 308, 501, 730
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	6 cut(s)	217, 504, 513, 551, 730, 782
HphI	GGTGA	2 cut(s)	350, 593
Hpy188I	TCNGA	3 cut(s)	427, 467, 774
Hpy188III	TCNNGA	3 cut(s)	49, 517, 734
HpyAV	CCTTC	5 cut(s)	55, 382, 556, 583, 797
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4V	TGCA	3 cut(s)	101, 532, 624
HpyF3I	CTNAG	2 cut(s)	299, 426
Hsp92II	CATG	4 cut(s)	141, 308, 501, 730
Kzo9I	GATC	1 cut(s)	745
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	9 cut(s)	111, 159, 308, 385, 493, 542, 689, 716, 735
Lsp1109I	GCAGC	2 cut(s)	18, 166
LweI	GCATC	1 cut(s)	778
MaeIII	GTNAC	2 cut(s)	91, 698
MalI	GATC	1 cut(s)	747
MboI	GATC	1 cut(s)	745
MhlI	GDGCHC	2 cut(s)	487, 637
MluCI	AATT	7 cut(s)	207, 253, 279, 318, 595, 653, 690
MlyI	GAGTC	1 cut(s)	739
MnlI	CCTC	9 cut(s)	49, 222, 254, 319, 328, 360, 448, 647, 658
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	3 cut(s)	63, 396, 659
MslI	CAYNNNNRTG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	304
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	1 cut(s)	745
NlaIII	CATG	4 cut(s)	141, 308, 501, 730
NlaIV	GGNNCC	1 cut(s)	635
NmeAIII	GCCGAG	1 cut(s)	618
NspI	RCATGY	1 cut(s)	501
PaqCI	CACCTGC	1 cut(s)	303
PciI	ACATGT	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	5 cut(s)	217, 504, 513, 551, 782
PkrI	GCNGC	2 cut(s)	8, 181
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
PscI	ACATGT	1 cut(s)	497
PshAI	GACNNNNGTC	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	702
PspEI	GGTNACC	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	635
PspOMI	GGGCCC	1 cut(s)	633
PspPI	GGNCC	3 cut(s)	308, 633, 634
PstI	CTGCAG	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	606
SacI	GAGCTC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	63, 396, 659
SatI	GCNGC	2 cut(s)	7, 180
Sau3AI	GATC	1 cut(s)	745
Sau96I	GGNCC	3 cut(s)	308, 633, 634
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	2 cut(s)	487, 637
SetI	ASST	9 cut(s)	124, 233, 242, 297, 371, 487, 524, 560, 724
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	7 cut(s)	207, 253, 279, 318, 595, 653, 690
SsiI	CCGC	2 cut(s)	143, 323
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	799
TaqI	TCGA	1 cut(s)	381
TasI	AATT	7 cut(s)	207, 253, 279, 318, 595, 653, 690
TfiI	GAWTC	5 cut(s)	217, 504, 513, 551, 782
Tru1I	TTAA	3 cut(s)	63, 396, 659
Tru9I	TTAA	3 cut(s)	63, 396, 659
TscAI	CASTG	1 cut(s)	539
TseI	GCWGC	2 cut(s)	6, 179
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.