Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003209

Physical Location & Seq

Genomic Coordinates Forward (+)

6160992 .. 6162529

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCGATCTTAAGCAACAATAGCAGCAGCAACGATGGAGCACCTTCATTTCATGAGTTCAAGAAACAAGCTTCTTTCTTCTTCAAGGAGAAGATCAAGACTGCAAGACTAGTCCTCACAGATGTTACACCAGCTCAATTATTGACTGAAGAAGCTACAAATGGGAATCCATTGTCACCAGACACAAGGACCTTGGGTTCAATTTCAAAGGCTGCTTTTGAACTGGATGATTACACAAGAATTGTGGAGATTTTGCACAAAAGATTGGTGAATTTTGACAGAAAGAACTGGAGGGTATCCTACAATTCTCTGATTGTAGTTGAGCATTTACTTACTCATGGACCGGAAAGTGTTGCAGTTGAGTTTGAGGTTGACAAAGATGTTATTGAACAGATGGGAAGCTTTCAGCATATAGATGAGAAAGGATTCAATTGGGGCCTTGCTCTTAGAAAGAAGTCGGGGAGAATTTTGAAACTGCTAGAGAGGGGGCCTCTTCTCAAAGAGGAGAGAGACAGAGCTAGGAAGCTAACAAGAGGGATCCAAGGGTTTGGAAGCTTCTGCCAAAGATCATCTGGTTCTTCAGCACAAGGAATTCTTGGAGAATCATCATTTCAAACGTATGGAAGGTCGAATTCTCAATTTCTCTCCAGCGACGATGAAAACCAAGAGAATCAGTTTCCATCATCTGACGTCGAAGATTTTACTAAGAAAGTTGAAGAATCAAAGCAGAGCAACGGAAGCTTTGCGATCATTGAGGCCGTCAAGGACGAAGCAGAGAAACCCGAAACTTTTAGTTTTAAAGAAAACTTGGTTCCAAAGAAGGAAGAGTTAGAGAGGTGTAACTGCAAGGGAGAGTCTAACCCACTTTTGGGTGGTGAGAAAGATGTCTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

299

Amino Acids

33.55

Weight (kDa)

5.6

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46540 AT3G46540 AT3G46540
fragaria_vesca	FvH4_3g35980 FvH4_3g35980 FvH4_7g22420
malus_domestica	MD01G1133800.v1.1 MD03G1094900.v1.1 MD03G1095100.v1.1 MD11G1110100.v1.1
prunus_persica	Prupe.2G235100_v2.0.a1 Prupe.6G078600_v2.0.a1
pyrus_communis	pycom03g07760 pycom11g09090
rosa_chinensis	RchiOBHm_Chr1g0367051 RchiOBHm_Chr5g0064341
rosa_laevigata	RLG00000027303 RLG00000035718
rosa_multiflora	Rmu_sc0000806.1_g000030 Rmu_sc0002269.1_g000003 Rmu_sc0003467.1_g000023 Rmu_sc0013700.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016660 Rroxscaffold_4G00289670
rosa_rugosa	Rorug01G0334100 Rorug05G0364100
rosa_samantha	Rh1AG341000 Rh1BG301500 Rh1CG317700 Rh1DG333900 Rh5AG422300 Rh5BG438200 Rh5CG460700 Rh5DG451100
rosa_wichuraiana	Rw0G023860 Rw1G030290 Rw5G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	693
AclWI	GGATC	2 cut(s)	532, 545
AcsI	RAATTY	4 cut(s)	271, 465, 591, 631
AcuI	CTGAAG	2 cut(s)	168, 564
AcyI	GRCGYC	1 cut(s)	690
AfiI	CCNNNNNNNGG	2 cut(s)	868, 869
AflII	CTTAAG	1 cut(s)	10
AhlI	ACTAGT	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	181, 213
AluBI	AGCT	8 cut(s)	71, 134, 155, 402, 518, 526, 555, 741
AluI	AGCT	8 cut(s)	71, 134, 155, 402, 518, 526, 555, 741
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	532, 545
AoxI	GGCC	3 cut(s)	436, 488, 756
ApeKI	GCWGC	3 cut(s)	24, 27, 212
ApoI	RAATTY	4 cut(s)	271, 465, 591, 631
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	4 cut(s)	189, 341, 436, 488
AsuHPI	GGTGA	3 cut(s)	168, 280, 887
AvaII	GGWCC	2 cut(s)	189, 341
BamHI	GGATCC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	36, 39, 199
BccI	CCATC	3 cut(s)	29, 388, 688
BceAI	ACGGC	1 cut(s)	743
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	504
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	3 cut(s)	110, 479, 519
BfrI	CTTAAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	25, 28, 213
BlsI	GCNGC	3 cut(s)	26, 29, 214
Bme18I	GGWCC	2 cut(s)	189, 341
BmgT120I	GGNCC	4 cut(s)	189, 341, 436, 488
BmiI	GGNNCC	4 cut(s)	437, 489, 539, 813
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpmI	CTGGAG	2 cut(s)	310, 631
BsaHI	GRCGYC	1 cut(s)	690
BsaJI	CCNNGG	2 cut(s)	192, 541
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	868, 869
Bse1I	ACTGG	2 cut(s)	228, 293
BseDI	CCNNGG	2 cut(s)	192, 541
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	868, 869
BseNI	ACTGG	2 cut(s)	228, 293
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	3 cut(s)	36, 39, 199
BshFI	GGCC	3 cut(s)	438, 490, 758
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	868, 869
BsmAI	GTCTC	1 cut(s)	504
BsnI	GGCC	3 cut(s)	438, 490, 758
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	6, 93, 537, 566, 747
BspANI	GGCC	3 cut(s)	438, 490, 758
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	437, 489, 539, 813
BspPI	GGATC	2 cut(s)	532, 545
BspTI	CTTAAG	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	228, 293
BssECI	CCNNGG	2 cut(s)	192, 541
BssMI	GATC	5 cut(s)	6, 93, 537, 566, 747
BssNI	GRCGYC	1 cut(s)	690
BssT1I	CCWWGG	2 cut(s)	192, 541
Bst6I	CTCTTC	2 cut(s)	498, 819
BstACI	GRCGYC	1 cut(s)	690
BstAFI	CTTAAG	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	446, 705
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	5 cut(s)	9, 96, 540, 569, 750
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	5 cut(s)	6, 93, 537, 566, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 738
BstV1I	GCAGC	3 cut(s)	36, 39, 199
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	438, 490, 758
BtsCI	GGATG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	189, 341, 436, 488
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	2 cut(s)	53, 338
DdeI	CTNAG	2 cut(s)	446, 705
DpnI	GATC	5 cut(s)	8, 95, 539, 568, 749
DpnII	GATC	5 cut(s)	6, 93, 537, 566, 747
DraI	TTTAAA	1 cut(s)	799
Eam1104I	CTCTTC	2 cut(s)	498, 819
EarI	CTCTTC	2 cut(s)	498, 819
Eco130I	CCWWGG	2 cut(s)	192, 541
Eco47I	GGWCC	2 cut(s)	189, 341
Eco57I	CTGAAG	2 cut(s)	168, 564
EcoO109I	RGGNCCY	3 cut(s)	189, 436, 488
EcoRI	GAATTC	2 cut(s)	591, 631
EcoT14I	CCWWGG	2 cut(s)	192, 541
ErhI	CCWWGG	2 cut(s)	192, 541
FaeI	CATG	2 cut(s)	56, 341
FaiI	YATR	5 cut(s)	54, 339, 411, 413, 621
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	2 cut(s)	52, 337
Fnu4HI	GCNGC	3 cut(s)	25, 28, 213
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	25, 28, 213
FspBI	CTAG	3 cut(s)	110, 479, 519
GluI	GCNGC	3 cut(s)	25, 28, 213
GsuI	CTGGAG	2 cut(s)	310, 631
HaeIII	GGCC	3 cut(s)	438, 490, 758
HapII	CCGG	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	2 cut(s)	56, 341
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	4 cut(s)	69, 400, 553, 739
HinfI	GANTC	6 cut(s)	166, 426, 602, 670, 719, 854
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	3 cut(s)	168, 280, 887
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	312, 688
Hpy188III	TCNNGA	4 cut(s)	53, 61, 97, 889
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	656, 695
HpyAV	CCTTC	3 cut(s)	54, 618, 814
HpyCH4IV	ACGT	2 cut(s)	617, 690
HpyCH4V	TGCA	4 cut(s)	104, 256, 356, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 738
HpyF3I	CTNAG	2 cut(s)	446, 705
HpySE526I	ACGT	2 cut(s)	617, 690
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	2 cut(s)	56, 341
Kzo9I	GATC	5 cut(s)	6, 93, 537, 566, 747
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	8 cut(s)	144, 192, 209, 274, 357, 558, 661, 874
Lsp1109I	GCAGC	3 cut(s)	36, 39, 199
MaeI	CTAG	3 cut(s)	110, 479, 519
MaeII	ACGT	2 cut(s)	617, 690
MaeIII	GTNAC	3 cut(s)	124, 174, 839
MalI	GATC	5 cut(s)	8, 95, 539, 568, 749
MboI	GATC	5 cut(s)	6, 93, 537, 566, 747
MboII	GAAGA	9 cut(s)	70, 73, 103, 161, 485, 570, 707, 728, 836
MfeI	CAATTG	1 cut(s)	430
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	863
MnlI	CCTC	9 cut(s)	125, 285, 361, 477, 496, 501, 527, 748, 828
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	2 cut(s)	11, 798
MslI	CAYNNNNRTG	1 cut(s)	414
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	21, 738
NdeII	GATC	5 cut(s)	6, 93, 537, 566, 747
NlaIII	CATG	2 cut(s)	56, 341
NlaIV	GGNNCC	4 cut(s)	437, 489, 539, 813
NmuCI	GTSAC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	5 cut(s)	166, 426, 602, 670, 719
PkrI	GCNGC	3 cut(s)	26, 29, 214
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	437, 489, 539, 813
PspPI	GGNCC	4 cut(s)	189, 341, 436, 488
PspPPI	RGGWCCY	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	11, 798
SatI	GCNGC	3 cut(s)	25, 28, 213
Sau3AI	GATC	5 cut(s)	6, 93, 537, 566, 747
Sau96I	GGNCC	4 cut(s)	189, 341, 436, 488
SchI	GAGTC	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	43
SinI	GGWCC	2 cut(s)	189, 341
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	109
SspMI	CTAG	3 cut(s)	110, 479, 519
StyI	CCWWGG	2 cut(s)	192, 541
TaiI	ACGT	2 cut(s)	620, 693
TaqI	TCGA	3 cut(s)	5, 629, 693
TfiI	GAWTC	5 cut(s)	166, 426, 602, 670, 719
Tru1I	TTAA	2 cut(s)	11, 798
Tru9I	TTAA	2 cut(s)	11, 798
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	3 cut(s)	24, 27, 212
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	36, 41, 672
TspGWI	ACGGA	1 cut(s)	750
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	2 cut(s)	189, 341
XapI	RAATTY	4 cut(s)	271, 465, 591, 631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	3 cut(s)	110, 479, 519
ZraI	GACGTC	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.