Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003209

Physical Location & Seq

Genomic Coordinates Forward (+)

5340489 .. 5342335

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G078600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCTATCCTAAGCAACAACAATAGCAGCAATGGTGCACCCTCATTTCATGAGTTCAAGAAACAAGCTTCTTTTTTCTTTAAGGAGAAGATTAAGACTGCAAGATTAGTCCTCACAGATGTTACACCAGCACAACTATTGACTGAAGAAGCTTCAAATGGAAATCCATGGGCACCAGACACAAGGACCTTGGGTTCAATTTCAAAGGCTGCTTTTGAGCTTGATGATTATACAAGAATTGTGGAGATTTTGCACAAAAGATTTCTGAAGTTTGAAAGGAAGAACTGGAGGGTCTCTTACAATTCTCTGATTGTAATAGAGCACTTGTTGACTCATGGACCAGAGAGTGTTGCAGTTGAGTTTGAAGTTGACAAAAATGTAATTGAGCAGATGGGAAGCTTCCAGTACATAGATGAAAAAGGATTCAATTGGGGCCTTGCTCTTAGGAAGAAGTCAGGGAGAATAGTGAAGCTGCTAGAGAAAGGTCCTCTTCTCAAAGAAGAGAGAGACCGAGCTCGGAAGCTAACGAGAGGGATTCAAGGGTTTGGAAGCTTCTGCCAAAGATCATCTGATTCTCCAGCACAAGGCATTTTAAGAGAATCATCCTTTGAAACATATGGAAGGTCTAATTCTCAATCTCACTTCAGCAACCATGAAAACCAAGAAAATCAGTTTCCATCCCCCACCGCGGATGATTTTACTAAGAAAGTTGAAGAATCAAAGCAGAGCAATGAAAATGTTGTGATCATTGAGGCTGGCAAGGGAGCAGAGAATTCAAGGTCTTGTGGTAGCTTTGGAGATGGTGAGGTGGCTCAGAAACCTGAAACTCAAACAAGTTTTAAAGAAAACATGATTCCAAACAAGGAAGAGTTAGATAGATGGAACTGCGTGGGGGAGTCTAATCCACTTTTGGGTGGTGAGAGAGATGGGACCAGGGTTGAAAATTCTGCTGAAGATGAACACCCTTTCAATGAAATTAACAATCAAAGTGCTGCTTCATTGATTGCTGCAAGTAATGCTCTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

343

Amino Acids

38.33

Weight (kDa)

5.67

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46540 AT3G46540 AT3G46540
fragaria_vesca	FvH4_3g35980 FvH4_3g35980 FvH4_7g22420
malus_domestica	MD01G1133800.v1.1 MD03G1094900.v1.1 MD03G1095100.v1.1 MD11G1110100.v1.1
prunus_persica	Prupe.2G235100_v2.0.a1 Prupe.6G078600_v2.0.a1
pyrus_communis	pycom03g07760 pycom11g09090
rosa_chinensis	RchiOBHm_Chr1g0367051 RchiOBHm_Chr5g0064341
rosa_laevigata	RLG00000027303 RLG00000035718
rosa_multiflora	Rmu_sc0000806.1_g000030 Rmu_sc0002269.1_g000003 Rmu_sc0003467.1_g000023 Rmu_sc0013700.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016660 Rroxscaffold_4G00289670
rosa_rugosa	Rorug01G0334100 Rorug05G0364100
rosa_samantha	Rh1AG341000 Rh1BG301500 Rh1CG317700 Rh1DG333900 Rh5AG422300 Rh5BG438200 Rh5CG460700 Rh5DG451100
rosa_wichuraiana	Rw0G023860 Rw1G030290 Rw5G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	689
AciI	CCGC	2 cut(s)	687, 689
AcsI	RAATTY	2 cut(s)	772, 943
AcuI	CTGAAG	4 cut(s)	165, 287, 628, 972
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	584, 688, 911
AjnI	CCWGG	1 cut(s)	932
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	9 cut(s)	68, 152, 220, 399, 472, 515, 523, 552, 792
AluI	AGCT	9 cut(s)	68, 152, 220, 399, 472, 515, 523, 552, 792
Alw21I	GWGCWC	3 cut(s)	40, 324, 517
Alw26I	GTCTC	2 cut(s)	298, 501
Alw44I	GTGCAC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	5 cut(s)	27, 209, 472, 992, 1007
ApoI	RAATTY	2 cut(s)	772, 943
AspS9I	GGNCC	5 cut(s)	186, 338, 433, 485, 930
AsuHPI	GGTGA	2 cut(s)	815, 929
AvaII	GGWCC	4 cut(s)	186, 338, 485, 930
BaeGI	GKGCMC	2 cut(s)	40, 175
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	3 cut(s)	40, 324, 517
BbvI	GCAGC	5 cut(s)	39, 196, 459, 979, 994
BccI	CCATC	5 cut(s)	385, 685, 794, 873, 920
BciT130I	CCWGG	1 cut(s)	934
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	298, 501
BfaI	CTAG	1 cut(s)	476
BisI	GCNGC	5 cut(s)	28, 210, 473, 993, 1008
BlsI	GCNGC	5 cut(s)	29, 211, 474, 994, 1009
Bme1390I	CCNGG	1 cut(s)	934
Bme18I	GGWCC	4 cut(s)	186, 338, 485, 930
BmgT120I	GGNCC	5 cut(s)	186, 338, 433, 485, 930
BmiI	GGNNCC	3 cut(s)	174, 434, 931
BmrFI	CCNGG	1 cut(s)	934
BpmI	CTGGAG	2 cut(s)	307, 561
Bpu10I	CCTNAGC	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	298, 501
BsaJI	CCNNGG	4 cut(s)	167, 189, 687, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	584, 688, 911
Bse1I	ACTGG	2 cut(s)	290, 403
Bse3DI	GCAATG	2 cut(s)	37, 736
BseBI	CCWGG	1 cut(s)	934
BseDI	CCNNGG	4 cut(s)	167, 189, 687, 933
BseGI	GGATG	3 cut(s)	602, 677, 697
BseLI	CCNNNNNNNGG	3 cut(s)	584, 688, 911
BseMI	GCAATG	2 cut(s)	37, 736
BseMII	CTCAG	1 cut(s)	827
BseNI	ACTGG	2 cut(s)	290, 403
BseSI	GKGCMC	2 cut(s)	40, 175
BseXI	GCAGC	5 cut(s)	39, 196, 459, 979, 994
Bsh1236I	CGCG	1 cut(s)	689
BshFI	GGCC	1 cut(s)	435
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	3 cut(s)	40, 324, 517
BslFI	GGGAC	1 cut(s)	943
BslI	CCNNNNNNNGG	3 cut(s)	584, 688, 911
BsmAI	GTCTC	2 cut(s)	298, 501
BsmFI	GGGAC	1 cut(s)	943
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	2 cut(s)	298, 501
Bsp1286I	GDGCHC	4 cut(s)	40, 175, 324, 517
Bsp143I	GATC	2 cut(s)	563, 744
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	2 cut(s)	687, 689
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	826
BspFNI	CGCG	1 cut(s)	689
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	174, 434, 931
BspT107I	GGYRCC	1 cut(s)	172
BspTNI	GGTCTC	2 cut(s)	298, 501
BsrDI	GCAATG	2 cut(s)	37, 736
BsrI	ACTGG	2 cut(s)	290, 403
BssECI	CCNNGG	4 cut(s)	167, 189, 687, 933
BssMI	GATC	2 cut(s)	563, 744
BssT1I	CCWWGG	2 cut(s)	167, 189
Bst2UI	CCWGG	1 cut(s)	934
Bst6I	CTCTTC	3 cut(s)	495, 495, 861
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	4 cut(s)	11, 443, 702, 813
BstDSI	CCRYGG	2 cut(s)	167, 687
BstF5I	GGATG	3 cut(s)	602, 677, 697
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	2 cut(s)	566, 747
BstMAI	GTCTC	2 cut(s)	298, 501
BstMBI	GATC	2 cut(s)	563, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	1016
BstNI	CCWGG	1 cut(s)	934
BstSCI	CCNGG	1 cut(s)	932
BstSLI	GKGCMC	2 cut(s)	40, 175
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	5 cut(s)	39, 196, 459, 979, 994
BsuRI	GGCC	1 cut(s)	435
BtgI	CCRYGG	2 cut(s)	167, 687
BtsCI	GGATG	3 cut(s)	602, 677, 697
Cac8I	GCNNGC	1 cut(s)	757
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	5 cut(s)	186, 338, 433, 485, 930
Cfr42I	CCGCGG	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	5 cut(s)	50, 168, 335, 653, 850
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	4 cut(s)	11, 443, 702, 813
DpnI	GATC	2 cut(s)	565, 746
DpnII	GATC	2 cut(s)	563, 744
DraI	TTTAAA	1 cut(s)	841
Eam1104I	CTCTTC	3 cut(s)	495, 495, 861
EarI	CTCTTC	3 cut(s)	495, 495, 861
Ecl136II	GAGCTC	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	167, 189
Eco24I	GRGCYC	1 cut(s)	517
Eco31I	GGTCTC	2 cut(s)	298, 501
Eco47I	GGWCC	4 cut(s)	186, 338, 485, 930
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	4 cut(s)	165, 287, 628, 972
EcoICRI	GAGCTC	1 cut(s)	515
EcoO109I	RGGNCCY	3 cut(s)	186, 433, 485
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	932
EcoT14I	CCWWGG	2 cut(s)	167, 189
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	167, 189
FaeI	CATG	5 cut(s)	53, 171, 338, 656, 853
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 979, 1011
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	5 cut(s)	49, 167, 334, 652, 849
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	5 cut(s)	28, 210, 473, 993, 1008
FokI	GGATG	3 cut(s)	589, 664, 704
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	5 cut(s)	28, 210, 473, 993, 1008
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	5 cut(s)	28, 210, 473, 993, 1008
GsuI	CTGGAG	2 cut(s)	307, 561
HaeIII	GGCC	1 cut(s)	435
Hin1II	CATG	5 cut(s)	53, 171, 338, 656, 853
HincII	GTYRAC	2 cut(s)	330, 370
HindII	GTYRAC	2 cut(s)	330, 370
HindIII	AAGCTT	4 cut(s)	66, 150, 397, 550
HinfI	GANTC	8 cut(s)	331, 423, 535, 572, 599, 716, 853, 896
HphI	GGTGA	2 cut(s)	815, 929
Hpy166II	GTNNAC	3 cut(s)	38, 330, 370
Hpy188I	TCNGA	5 cut(s)	267, 309, 519, 571, 816
Hpy188III	TCNNGA	2 cut(s)	50, 58
Hpy8I	GTNNAC	3 cut(s)	38, 330, 370
HpyAV	CCTTC	1 cut(s)	615
HpyCH4V	TGCA	5 cut(s)	38, 101, 253, 353, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1016
HpyF3I	CTNAG	4 cut(s)	11, 443, 702, 813
Hsp92II	CATG	5 cut(s)	53, 171, 338, 656, 853
Ksp22I	TGATCA	1 cut(s)	744
KspI	CCGCGG	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	563, 744
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	5 cut(s)	39, 196, 459, 979, 994
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	565, 746
MboI	GATC	2 cut(s)	563, 744
MboII	GAAGA	9 cut(s)	100, 158, 292, 460, 482, 512, 725, 878, 965
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	4 cut(s)	40, 175, 324, 517
MluCI	AATT	9 cut(s)	198, 237, 301, 381, 427, 628, 772, 943, 975
MlyI	GAGTC	2 cut(s)	325, 905
MnlI	CCTC	7 cut(s)	52, 122, 282, 498, 524, 745, 799
MseI	TTAA	5 cut(s)	81, 93, 593, 840, 978
MspA1I	CMGCKG	1 cut(s)	689
MspR9I	CCNGG	1 cut(s)	934
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	934
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	1016
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	2 cut(s)	563, 744
NlaIII	CATG	5 cut(s)	53, 171, 338, 656, 853
NlaIV	GGNNCC	3 cut(s)	174, 434, 931
PagI	TCATGA	1 cut(s)	49
PfeI	GAWTC	6 cut(s)	423, 535, 572, 599, 716, 853
PkrI	GCNGC	5 cut(s)	29, 211, 474, 994, 1009
PleI	GAGTC	2 cut(s)	325, 904
PpsI	GAGTC	2 cut(s)	325, 904
PpuMI	RGGWCCY	2 cut(s)	186, 485
Psp124BI	GAGCTC	1 cut(s)	517
Psp5II	RGGWCCY	2 cut(s)	186, 485
Psp6I	CCWGG	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	932
PspN4I	GGNNCC	3 cut(s)	174, 434, 931
PspPI	GGNCC	5 cut(s)	186, 338, 433, 485, 930
PspPPI	RGGWCCY	2 cut(s)	186, 485
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	517
SacII	CCGCGG	1 cut(s)	690
SaqAI	TTAA	5 cut(s)	81, 93, 593, 840, 978
SatI	GCNGC	5 cut(s)	28, 210, 473, 993, 1008
Sau3AI	GATC	2 cut(s)	563, 744
Sau96I	GGNCC	5 cut(s)	186, 338, 433, 485, 930
SchI	GAGTC	2 cut(s)	325, 905
ScrFI	CCNGG	1 cut(s)	934
SduI	GDGCHC	4 cut(s)	40, 175, 324, 517
Sfr303I	CCGCGG	1 cut(s)	690
SgrBI	CCGCGG	1 cut(s)	690
SinI	GGWCC	4 cut(s)	186, 338, 485, 930
Sse9I	AATT	9 cut(s)	198, 237, 301, 381, 427, 628, 772, 943, 975
SsiI	CCGC	2 cut(s)	687, 689
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	932
StyI	CCWWGG	2 cut(s)	167, 189
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	9 cut(s)	198, 237, 301, 381, 427, 628, 772, 943, 975
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	6 cut(s)	423, 535, 572, 599, 716, 853
Tru1I	TTAA	5 cut(s)	81, 93, 593, 840, 978
Tru9I	TTAA	5 cut(s)	81, 93, 593, 840, 978
TseI	GCWGC	5 cut(s)	27, 209, 472, 992, 1007
TspDTI	ATGAA	7 cut(s)	38, 429, 669, 747, 972, 987, 987
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	4 cut(s)	186, 338, 485, 930
XapI	RAATTY	2 cut(s)	772, 943
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.