Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000806.1

Orthogroup ID

OG0003209

Physical Location & Seq

Genomic Coordinates Reverse (-)

111903 .. 113388

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000806.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgtctgtcttgagcaaccatagtggtacgactacaccattgtttaatgaattgaagaagcaagcttccttctttttcaaggagaagatcaagaacgcaaggttggtcctcacagatgtaacaccagctcaattattgactgaggaagctacaaatggaaatccatgggcaccagacacaaggactttggcttcaatttcaagggctgcttttgaactcgatgactttacaagaattgtggagattttgcacaaaagattcctcaagtttgagagaaaggactggagggtatcatacaattctctgattgtgcttgaaaacttgttgactcatggaccagagagtgttgcagctgagtttgaggttgacaaaggtgttattgaacagatgggaggctttcagcacatagatgagaaaggattcaattggggtcttgcagttagaaaaaagtctctgagaatattgaagctgctacaccaaggaaactttctcaaagaagagagacaccgagctcgaaaactaacaagaggcattcaaggatttggaagcttttgccagagaacatcttcggcacaaggcattttaagagaatcatcgtatgaaacatatggaaggtctaattctgacttcatcaaccatgaagatcaagaaaaccagctaccatcccccagtattgaagatttaccaaagaaattaggagaatcgaagcagaataatgaaagcgtaagcaccgactctagcaaggaagcagggaattcaagctctagggatggtctggtggctaagaaacctgaaactcgaacaagttttaaagaaaacaaggttccaaacaaggaggtattagataaatggaactgcgaggaggagtttaacccacttcttttgggtgataacaaagatgagtccagaattgaactttctactgaagatgatcaccctttcagtgacactaacaatcaaagtgcatcttcgttgcttgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

327

Amino Acids

37.03

Weight (kDa)

5.99

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46540 AT3G46540 AT3G46540
fragaria_vesca	FvH4_3g35980 FvH4_3g35980 FvH4_7g22420
malus_domestica	MD01G1133800.v1.1 MD03G1094900.v1.1 MD03G1095100.v1.1 MD11G1110100.v1.1
prunus_persica	Prupe.2G235100_v2.0.a1 Prupe.6G078600_v2.0.a1
pyrus_communis	pycom03g07760 pycom11g09090
rosa_chinensis	RchiOBHm_Chr1g0367051 RchiOBHm_Chr5g0064341
rosa_laevigata	RLG00000027303 RLG00000035718
rosa_multiflora	Rmu_sc0000806.1_g000030 Rmu_sc0002269.1_g000003 Rmu_sc0003467.1_g000023 Rmu_sc0013700.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016660 Rroxscaffold_4G00289670
rosa_rugosa	Rorug01G0334100 Rorug05G0364100
rosa_samantha	Rh1AG341000 Rh1BG301500 Rh1CG317700 Rh1DG333900 Rh5AG422300 Rh5BG438200 Rh5CG460700 Rh5DG451100
rosa_wichuraiana	Rw0G023860 Rw1G030290 Rw5G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 471, 503
AluBI	AGCT	9 cut(s)	65, 128, 149, 353, 469, 512, 549, 658, 762
AluI	AGCT	9 cut(s)	65, 128, 149, 353, 469, 512, 549, 658, 762
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	456, 496
ApeKI	GCWGC	3 cut(s)	206, 350, 469
ApoI	RAATTY	1 cut(s)	754
Asp700I	GAANNNNTTC	2 cut(s)	419, 565
AspS9I	GGNCC	2 cut(s)	106, 335
AsuHPI	GGTGA	2 cut(s)	899, 926
AvaII	GGWCC	2 cut(s)	106, 335
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	193, 362, 456
BccI	CCATC	3 cut(s)	382, 670, 764
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	2 cut(s)	456, 496
BfaI	CTAG	2 cut(s)	738, 765
BisI	GCNGC	3 cut(s)	207, 351, 470
BlsI	GCNGC	3 cut(s)	208, 352, 471
Bme18I	GGWCC	2 cut(s)	106, 335
BmgT120I	GGNCC	2 cut(s)	106, 335
BmiI	GGNNCC	2 cut(s)	171, 825
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	1 cut(s)	974
BmuI	ACTGGG	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	304
BpuEI	CTTGAG	2 cut(s)	31, 248
BsaJI	CCNNGG	2 cut(s)	164, 478
Bse1I	ACTGG	2 cut(s)	287, 669
BseDI	CCNNGG	2 cut(s)	164, 478
BseGI	GGATG	2 cut(s)	662, 775
BseMII	CTCAG	3 cut(s)	132, 345, 446
BseNI	ACTGG	2 cut(s)	287, 669
BseRI	GAGGAG	2 cut(s)	875, 878
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	193, 362, 456
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	456, 496
BsmI	GAATGC	1 cut(s)	531
Bsp1286I	GDGCHC	2 cut(s)	172, 514
Bsp143I	GATC	3 cut(s)	87, 643, 931
Bsp19I	CCATGG	1 cut(s)	164
BspCNI	CTCAG	3 cut(s)	133, 346, 447
BspLI	GGNNCC	2 cut(s)	171, 825
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	287, 669
BssECI	CCNNGG	2 cut(s)	164, 478
BssMI	GATC	3 cut(s)	87, 643, 931
BssT1I	CCWWGG	2 cut(s)	164, 478
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	141, 354, 455, 783
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	662, 775
BstKTI	GATC	3 cut(s)	90, 646, 934
BstMAI	GTCTC	2 cut(s)	456, 496
BstMBI	GATC	3 cut(s)	87, 643, 931
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	193, 362, 456
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	662, 775
BtsIMutI	CAGTG	1 cut(s)	949
Cac8I	GCNNGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	106, 335
Csp6I	GTAC	1 cut(s)	27
CspCI	CAANNNNNGTGG	6 cut(s)	4, 39, 219, 254, 864, 899
CviAII	CATG	3 cut(s)	165, 332, 638
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	4 cut(s)	141, 354, 455, 783
DpnI	GATC	3 cut(s)	89, 645, 933
DpnII	GATC	3 cut(s)	87, 643, 931
DraI	TTTAAA	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	2 cut(s)	164, 478
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	106, 335
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	164, 478
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	2 cut(s)	164, 478
FaeI	CATG	3 cut(s)	168, 335, 641
FalI	AAGNNNNNCTT	4 cut(s)	193, 225, 952, 984
FatI	CATG	3 cut(s)	164, 331, 637
FauNDI	CATATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	3 cut(s)	207, 351, 470
FokI	GGATG	2 cut(s)	649, 782
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	3 cut(s)	207, 351, 470
FspBI	CTAG	2 cut(s)	738, 765
GluI	GCNGC	3 cut(s)	207, 351, 470
GsuI	CTGGAG	1 cut(s)	304
Hin1II	CATG	3 cut(s)	168, 335, 641
HincII	GTYRAC	2 cut(s)	327, 367
HindII	GTYRAC	2 cut(s)	327, 367
HindIII	AAGCTT	2 cut(s)	63, 547
HinfI	GANTC	7 cut(s)	258, 328, 420, 590, 701, 734, 902
HphI	GGTGA	2 cut(s)	899, 926
Hpy166II	GTNNAC	2 cut(s)	327, 367
Hpy188I	TCNGA	3 cut(s)	306, 456, 625
Hpy188III	TCNNGA	4 cut(s)	10, 91, 647, 906
Hpy8I	GTNNAC	2 cut(s)	327, 367
HpyAV	CCTTC	2 cut(s)	79, 606
HpyCH4V	TGCA	4 cut(s)	250, 350, 437, 965
HpyF3I	CTNAG	4 cut(s)	141, 354, 455, 783
Hsp92II	CATG	3 cut(s)	168, 335, 641
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	3 cut(s)	87, 643, 931
Lsp1109I	GCAGC	3 cut(s)	193, 362, 456
LweI	GCATC	1 cut(s)	974
MaeI	CTAG	2 cut(s)	738, 765
MaeIII	GTNAC	2 cut(s)	118, 944
MalI	GATC	3 cut(s)	89, 645, 933
MboI	GATC	3 cut(s)	87, 643, 931
MboII	GAAGA	8 cut(s)	67, 97, 509, 558, 653, 689, 938, 960
MfeI	CAATTG	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	172, 514
MlyI	GAGTC	3 cut(s)	322, 728, 911
MroXI	GAANNNNTTC	2 cut(s)	419, 565
MseI	TTAA	4 cut(s)	45, 584, 810, 870
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	531
NcoI	CCATGG	1 cut(s)	164
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	3 cut(s)	87, 643, 931
NlaIII	CATG	3 cut(s)	168, 335, 641
NlaIV	GGNNCC	2 cut(s)	171, 825
NmuCI	GTSAC	1 cut(s)	944
PctI	GAATGC	1 cut(s)	531
PdmI	GAANNNNTTC	2 cut(s)	419, 565
PfeI	GAWTC	4 cut(s)	258, 420, 590, 701
PkrI	GCNGC	3 cut(s)	208, 352, 471
PleI	GAGTC	3 cut(s)	322, 728, 910
PpsI	GAGTC	3 cut(s)	322, 728, 910
Psp124BI	GAGCTC	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	171, 825
PspPI	GGNCC	2 cut(s)	106, 335
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	4 cut(s)	45, 584, 810, 870
SatI	GCNGC	3 cut(s)	207, 351, 470
Sau3AI	GATC	3 cut(s)	87, 643, 931
Sau96I	GGNCC	2 cut(s)	106, 335
SchI	GAGTC	3 cut(s)	322, 728, 911
SduI	GDGCHC	2 cut(s)	172, 514
SfaNI	GCATC	1 cut(s)	974
SinI	GGWCC	2 cut(s)	106, 335
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	10, 263
SmoI	CTYRAG	2 cut(s)	10, 263
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	2 cut(s)	738, 765
SstI	GAGCTC	1 cut(s)	514
StyI	CCWWGG	2 cut(s)	164, 478
TaqI	TCGA	4 cut(s)	219, 514, 704, 799
TfiI	GAWTC	4 cut(s)	258, 420, 590, 701
Tru1I	TTAA	4 cut(s)	45, 584, 810, 870
Tru9I	TTAA	4 cut(s)	45, 584, 810, 870
TscAI	CASTG	1 cut(s)	949
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	3 cut(s)	206, 350, 469
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	5 cut(s)	63, 615, 619, 654, 732
TspRI	CASTG	1 cut(s)	949
VpaK11BI	GGWCC	2 cut(s)	106, 335
XapI	RAATTY	1 cut(s)	754
XmnI	GAANNNNTTC	2 cut(s)	419, 565
XspI	CTAG	2 cut(s)	738, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.