Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Reverse (-)

32201946 .. 32202284

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGACTTGGTCTCAGTTTATCCAGGCATTCTCTCATGTTCACCATGTTGTTCATGAGGGTGTGGCCGCTGCAGTTGCGGCTGCACCGGATGTGCACAAGACCATCCATGACGGAGTTGTCACTGCTGCACCGTTTGTTCACAAGACCATTCACGATGGGGTGATCTCTGCTGCACCGACTGTTGGGGCTGTTGCAGCTACTATAACAAAAGCTTCCCCAATAATAACGACTGTACTGCCATGCTCTGCCCCAGTAATGGGTCCTGTTGCGGCGGCTGCTGGGGCGGTTGTTGCTGTCTCTGAGGTGGTGAAGGCTGCTTCTAATAATCAAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.16

Weight (kDa)

7.1

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AciI	CCGC	5 cut(s)	66, 77, 269, 272, 284
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	182, 256, 257
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	2 cut(s)	197, 212
AluI	AGCT	2 cut(s)	197, 212
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	15, 301
Alw44I	GTGCAC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	63
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	7 cut(s)	68, 80, 125, 170, 194, 275, 314
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	32, 172, 319
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	7 cut(s)	55, 67, 112, 157, 206, 262, 301
BccI	CCATC	2 cut(s)	110, 149
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	15, 301
BfmI	CTRYAG	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	23
BmrI	ACTGGG	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 256, 257
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	94, 102
BseLI	CCNNNNNNNGG	3 cut(s)	182, 256, 257
BseMII	CTCAG	2 cut(s)	26, 291
BseNI	ACTGG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	7 cut(s)	55, 67, 112, 157, 206, 262, 301
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	3 cut(s)	66, 111, 156
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	182, 256, 257
BsmAI	GTCTC	2 cut(s)	15, 301
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	5 cut(s)	66, 77, 269, 272, 284
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	25, 292
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	132, 181, 232
BstDEI	CTNAG	2 cut(s)	12, 300
BstF5I	GGATG	2 cut(s)	94, 102
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	2 cut(s)	15, 301
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 77, 194, 275, 281, 290
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	7 cut(s)	55, 67, 112, 157, 206, 262, 301
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	94, 102
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	5 cut(s)	35, 44, 53, 107, 240
CviJI	RGCY	7 cut(s)	65, 80, 188, 197, 212, 275, 314
CviKI_1	RGCY	7 cut(s)	65, 80, 188, 197, 212, 275, 314
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	12, 300
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	38, 47, 56, 110, 243
FaiI	YATR	6 cut(s)	36, 45, 54, 108, 203, 241
FatI	CATG	5 cut(s)	34, 43, 52, 106, 239
FokI	GGATG	2 cut(s)	89, 101
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	5 cut(s)	38, 47, 56, 110, 243
HindIII	AAGCTT	1 cut(s)	210
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	32, 172, 319
Hpy166II	GTNNAC	3 cut(s)	40, 94, 139
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	53, 152
Hpy8I	GTNNAC	3 cut(s)	40, 94, 139
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	132, 181, 232
HpyCH4V	TGCA	6 cut(s)	71, 83, 94, 128, 173, 194
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 77, 194, 275, 281, 290
HpyF3I	CTNAG	2 cut(s)	12, 300
Hsp92II	CATG	5 cut(s)	38, 47, 56, 110, 243
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	6 cut(s)	8, 35, 99, 264, 264, 276
Lsp1109I	GCAGC	7 cut(s)	55, 67, 112, 157, 206, 262, 301
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	49, 295
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	74, 77, 194, 275, 281, 290
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	5 cut(s)	38, 47, 56, 110, 243
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	52
PctI	GAATGC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	260
PspPPI	RGGWCCY	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	3 cut(s)	199, 214, 306
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	57
SsiI	CCGC	5 cut(s)	66, 77, 269, 272, 284
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	132, 181, 232
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	4 cut(s)	68, 80, 272, 275
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	7 cut(s)	68, 80, 125, 170, 194, 275, 314
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	7
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.