Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002345.1

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Reverse (-)

100403 .. 102710

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002345.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgctagtcaccggaagaggttatccgttgatctgcccttctgtgcagcaccgcaactgcaaggatattgcttacctgggatgcagcctttccagttgtcaacatcagagattgaagctcctctatggcaggatccactttagagaccatcaccgacagtctcaccttcattcaaccaacatatcgatggtcgatgatgttctccaaaacatccatagatcggggctccgatcgggtcgtctctccaattggacgggtccgcctccactcttctccaagtacaaagcccatgcttgtaccccgatcggattgcctatatctcctccttcagtcgcttcctacctagctgggattgaatctgatcttccgccaccctgctcgagagaccagcagcgagatggccgatctgcgtggggttggcgctatgcaccattgatagagtccccggccatggtggctagggtacggagaaagttggcggagcgggttagattcgaaccttgtgtgtccatatttgatctaggcggcagcaggggagatggcgtctttggaagggactgttggtcgcgtaacgtgcagtcggaaccaatttcggatgggttcggtttggtctgtaagttttcgggtcttcatcggggtcttttgatggcgtcgtggtggaggtgttccttctgggtagcggtgaaggcaagctcgtggctgctggtgtccattcatggttctggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

9.72

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	484
AccII	CGCG	1 cut(s)	568
AciI	CCGC	7 cut(s)	52, 260, 368, 479, 484, 525, 680
AclWI	GGATC	2 cut(s)	127, 140
AcoI	YGGCCR	2 cut(s)	400, 447
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	2 cut(s)	543, 650
AfaI	GTAC	3 cut(s)	281, 298, 465
AfiI	CCNNNNNNNGG	2 cut(s)	220, 451
AgsI	TTSAA	3 cut(s)	115, 174, 356
AhdI	GACNNNNNGTC	1 cut(s)	562
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AluBI	AGCT	3 cut(s)	118, 347, 693
AluI	AGCT	3 cut(s)	118, 347, 693
Alw26I	GTCTC	4 cut(s)	138, 165, 245, 378
AlwI	GGATC	2 cut(s)	127, 140
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	2 cut(s)	400, 447
ApeKI	GCWGC	5 cut(s)	46, 84, 391, 528, 700
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	143, 155, 694
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	620
BbvI	GCAGC	5 cut(s)	58, 96, 403, 540, 687
BccI	CCATC	6 cut(s)	156, 181, 392, 533, 590, 640
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	4 cut(s)	138, 165, 245, 378
BfaI	CTAG	4 cut(s)	5, 344, 459, 521
BfoI	RGCGCY	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	6 cut(s)	47, 85, 392, 526, 529, 701
BlsI	GCNGC	6 cut(s)	48, 86, 393, 527, 530, 702
Bme1390I	CCNGG	2 cut(s)	77, 446
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	562
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	4 cut(s)	134, 227, 258, 585
BmrFI	CCNGG	2 cut(s)	77, 446
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	185
BsaHI	GRCGYC	2 cut(s)	543, 650
BsaI	GGTCTC	2 cut(s)	138, 378
BsaJI	CCNNGG	3 cut(s)	76, 444, 450
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 451
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	3 cut(s)	76, 444, 450
BseGI	GGATG	3 cut(s)	86, 210, 601
BseLI	CCNNNNNNNGG	2 cut(s)	220, 451
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	110, 312
BseXI	GCAGC	5 cut(s)	58, 96, 403, 540, 687
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	2 cut(s)	65, 596
Bsh1236I	CGCG	1 cut(s)	568
Bsh1285I	CGRYCG	2 cut(s)	233, 306
BshFI	GGCC	2 cut(s)	402, 449
BshVI	ATCGAT	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	233, 306
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	12, 446
BslFI	GGGAC	2 cut(s)	427, 569
BslI	CCNNNNNNNGG	2 cut(s)	220, 451
BsmAI	GTCTC	4 cut(s)	138, 165, 245, 378
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	427, 569
BsnI	GGCC	2 cut(s)	402, 449
Bso31I	GGTCTC	2 cut(s)	138, 378
BsoBI	CYCGRG	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	7 cut(s)	52, 260, 368, 479, 484, 525, 680
BspANI	GGCC	2 cut(s)	402, 449
BspDI	ATCGAT	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	4 cut(s)	134, 227, 258, 585
BspPI	GGATC	2 cut(s)	127, 140
BspT104I	TTCGAA	1 cut(s)	495
BspTNI	GGTCTC	2 cut(s)	138, 378
BsrBI	CCGCTC	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	76, 444, 450
BssMI	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
BssNI	GRCGYC	2 cut(s)	543, 650
BssSI	CACGAG	1 cut(s)	694
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	159, 560
Bst6I	CTCTTC	2 cut(s)	10, 275
BstACI	GRCGYC	2 cut(s)	543, 650
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	691
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	3 cut(s)	86, 210, 601
BstFNI	CGCG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	8 cut(s)	33, 135, 221, 233, 306, 364, 407, 520
BstMAI	GTCTC	4 cut(s)	138, 165, 245, 378
BstMBI	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
BstMCI	CGRYCG	2 cut(s)	233, 306
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 574, 686
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	75, 444
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	5 cut(s)	58, 96, 403, 540, 687
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	402, 449
BsuTUI	ATCGAT	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	86, 210, 601
Cac8I	GCNNGC	1 cut(s)	691
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	2 cut(s)	532, 639
Csp6I	GTAC	3 cut(s)	280, 297, 464
CviAII	CATG	3 cut(s)	290, 451, 716
CviQI	GTAC	3 cut(s)	280, 297, 464
DpnI	GATC	8 cut(s)	32, 134, 220, 232, 305, 363, 406, 519
DpnII	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
DriI	GACNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	2 cut(s)	400, 447
Eam1104I	CTCTTC	2 cut(s)	10, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	562
EarI	CTCTTC	2 cut(s)	10, 275
EciI	GGCGGA	3 cut(s)	249, 357, 494
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	2 cut(s)	138, 378
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	3 cut(s)	293, 454, 719
FaiI	YATR	9 cut(s)	126, 182, 216, 291, 317, 426, 452, 512, 717
FaqI	GGGAC	2 cut(s)	427, 569
FatI	CATG	3 cut(s)	289, 450, 715
FauI	CCCGC	1 cut(s)	477
Fnu4HI	GCNGC	6 cut(s)	47, 85, 392, 526, 529, 701
FokI	GGATG	3 cut(s)	93, 197, 608
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	6 cut(s)	47, 85, 392, 526, 529, 701
FspBI	CTAG	4 cut(s)	5, 344, 459, 521
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	6 cut(s)	47, 85, 392, 526, 529, 701
GsaI	CCCAGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	402, 449
HapII	CCGG	2 cut(s)	12, 446
HgaI	GACGC	2 cut(s)	532, 639
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	2 cut(s)	543, 650
Hin1II	CATG	3 cut(s)	293, 454, 719
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	3 cut(s)	356, 440, 492
HpaII	CCGG	2 cut(s)	12, 446
HphI	GGTGA	3 cut(s)	143, 155, 694
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	6 cut(s)	108, 230, 308, 361, 583, 595
Hpy188III	TCNNGA	2 cut(s)	381, 723
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	6 cut(s)	48, 176, 336, 546, 679, 679
HpyCH4III	ACNGT	2 cut(s)	159, 560
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	5 cut(s)	46, 60, 84, 428, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 574, 686
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	2 cut(s)	543, 650
Hsp92II	CATG	3 cut(s)	293, 454, 719
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
LmnI	GCTCC	3 cut(s)	123, 231, 481
Lsp1109I	GCAGC	5 cut(s)	58, 96, 403, 540, 687
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	4 cut(s)	5, 344, 459, 521
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	7, 569
MalI	GATC	8 cut(s)	32, 134, 220, 232, 305, 363, 406, 519
MbiI	CCGCTC	1 cut(s)	484
MboI	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
MboII	GAAGA	4 cut(s)	27, 262, 356, 620
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	2 cut(s)	247, 588
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	5 cut(s)	11, 131, 273, 333, 654
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	2 cut(s)	12, 446
MspR9I	CCNGG	2 cut(s)	77, 446
MunI	CAATTG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	3 cut(s)	455, 574, 686
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
NlaIII	CATG	3 cut(s)	293, 454, 719
NlaIV	GGNNCC	4 cut(s)	134, 227, 258, 585
NmuCI	GTSAC	1 cut(s)	7
NspV	TTCGAA	1 cut(s)	495
PaeR7I	CTCGAG	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	356, 492
PkrI	GCNGC	6 cut(s)	48, 86, 393, 527, 530, 702
Ple19I	CGATCG	2 cut(s)	233, 306
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	134, 227, 258, 585
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	132
PvuI	CGATCG	2 cut(s)	233, 306
RsaI	GTAC	3 cut(s)	281, 298, 465
RsaNI	GTAC	3 cut(s)	280, 297, 464
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	6 cut(s)	47, 85, 392, 526, 529, 701
Sau3AI	GATC	8 cut(s)	30, 132, 218, 230, 303, 361, 404, 517
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	77, 446
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	71
Sfr274I	CTCGAG	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	2 cut(s)	247, 588
SsiI	CCGC	7 cut(s)	52, 260, 368, 479, 484, 525, 680
SspMI	CTAG	4 cut(s)	5, 344, 459, 521
StyD4I	CCNGG	2 cut(s)	75, 444
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	159, 560
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	4 cut(s)	185, 192, 380, 495
TasI	AATT	2 cut(s)	247, 588
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	2 cut(s)	356, 492
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	5 cut(s)	46, 84, 391, 528, 700
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	158, 620, 704
TspGWI	ACGGA	2 cut(s)	15, 481
VpaK11BI	GGWCC	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	2 cut(s)	184, 395
XhoI	CTCGAG	1 cut(s)	379
XspI	CTAG	4 cut(s)	5, 344, 459, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.