Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Reverse (-)

25213199 .. 25214835

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 325 bp

ATGATAACGTTGTCATCGTCGAAACTCTCTTGGCTCAAATCAAGCCTTCACTTTCCATCACCGTTGGTAAGAGGACCAAGAGGGAGGTCATCGAGAAGCAGGTCATCGGGCTTAAATTGGAGGCTCCTTGAATTCATTGATTGTCTTGGACAGCCAAAGAGGCTGTTTGTTTTTGTGAATCTGTTTGGAGGGAGCAAATTGGCTTCGAAGATTTTTGTTGATGAAGTGAAGCCGCTTTTTGCTGATGCTAGTGTTCAGTTTACACTGCAAGGTTTATTTGGAGGTTCCAAATTGCGAAGAATTGGCAGTGGCACTTCAATCAAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000325 GO:0001101 GO:0001558 GO:0001727 GO:0001932 GO:0001934 GO:0001959 GO:0003376 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006457 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006793 GO:0006796 GO:0006807 GO:0006937 GO:0006940 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008284 GO:0008289 GO:0008481 GO:0008610 GO:0009056 GO:0009058 GO:0009705 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010799 GO:0010800 GO:0010803 GO:0010941 GO:0016020 GO:0016042 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0017076 GO:0019219 GO:0019220 GO:0019222 GO:0019722 GO:0019751 GO:0019899 GO:0019902 GO:0019903 GO:0019932 GO:0022603 GO:0023051 GO:0023052 GO:0023056 GO:0030148 GO:0030149 GO:0030258 GO:0030307 GO:0030334 GO:0030335 GO:0030554 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032870 GO:0032879 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0035556 GO:0035639 GO:0036094 GO:0038023 GO:0038036 GO:0040008 GO:0040012 GO:0040017 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044057 GO:0044093 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045125 GO:0045765 GO:0045766 GO:0045787 GO:0045927 GO:0045931 GO:0045933 GO:0045937 GO:0045987 GO:0046165 GO:0046173 GO:0046466 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0046521 GO:0046834 GO:0046872 GO:0048145 GO:0048146 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051270 GO:0051272 GO:0051716 GO:0051721 GO:0051726 GO:0060089 GO:0060255 GO:0060548 GO:0060759 GO:0065007 GO:0065009 GO:0070300 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0090257 GO:0090351 GO:0090520 GO:0097159 GO:0097164 GO:0097305 GO:0097306 GO:0097367 GO:0098588 GO:0098805 GO:1901222 GO:1901224 GO:1901265 GO:1901342 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903320 GO:1903322 GO:1903506 GO:1904018 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04020 ko04071 ko04072 ko04370 ko04371 ko04666 ko05152 map00600 map01100 map04020 map04071 map04072 map04370 map04371 map04666 map05152

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

108

Amino Acids

11.9

Weight (kDa)

11.52

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AciI	CCGC	1 cut(s)	233
AclI	AACGTT	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	131, 318
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	51
AsuII	TTCGAA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	74
BccI	CCATC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	125, 286
BmsI	GCATC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	206
BspACI	CCGC	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	125, 286
BspMI	ACCTGC	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BtsI	GCAGTG	2 cut(s)	263, 313
BtsIMutI	CAGTG	2 cut(s)	263, 313
BveI	ACCTGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	74
CviJI	RGCY	8 cut(s)	34, 45, 111, 124, 154, 163, 203, 232
CviKI_1	RGCY	8 cut(s)	34, 45, 111, 124, 154, 163, 203, 232
Eco47I	GGWCC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	8
LmnI	GCTCC	2 cut(s)	129, 192
LpnPI	CCDG	1 cut(s)	85
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	8
MboII	GAAGA	2 cut(s)	220, 309
MluCI	AATT	5 cut(s)	115, 131, 197, 290, 300
MnlI	CCTC	7 cut(s)	65, 74, 78, 114, 153, 182, 275
MseI	TTAA	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	125, 286
NspV	TTCGAA	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	125, 286
PspPI	GGNCC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	233
Sau96I	GGNCC	1 cut(s)	74
SetI	ASST	5 cut(s)	11, 89, 104, 274, 286
SfaNI	GCATC	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	5 cut(s)	115, 131, 197, 290, 300
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	20, 92, 206
TasI	AATT	5 cut(s)	115, 131, 197, 290, 300
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	270, 313
TspDTI	ATGAA	2 cut(s)	124, 237
TspRI	CASTG	2 cut(s)	270, 313
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	131
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.