Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Reverse (-)

67430335 .. 67448331

Gene Structure 17997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG483900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCGGATCCACTTTCCAAACCATCACCAACCTCCTCACCTTCATTCGACCAACAGATCGGTGGTCAATGATGCTTTCCAAAACATCCCTAGATCAGGGCTCCGATCGGATCATCGCTCCAACTGGGCGGGTGTGGCCGCTGCAGTATCGGCTCCACCGGCTGTGCACAAGGCCATTCCTCTGCATCAGTTGTTCACAAAGCCATGCCATTCACGATGGGGTGGTGTCGACTGCACCGACTATTGGGGGTGTTGCAGCTACTATAACAACAGTTTCCCCAGTAATAACAGATGTGCTGCCAAGTTATGCTCCAGTTATGAGTCTTGTTGAGGCGGCTGCTGGGGCTGTCTCTGAGATGGTGAAGGCTGTTTCTAATAATCAAGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.89

Weight (kDa)

9.02

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	3 cut(s)	130, 140, 335
AclWI	GGATC	3 cut(s)	3, 16, 119
AcoI	YGGCCR	2 cut(s)	3, 137
AfiI	CCNNNNNNNGG	2 cut(s)	97, 245
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	3, 16, 119
AoxI	GGCC	3 cut(s)	3, 137, 173
ApaLI	GTGCAC	1 cut(s)	166
ApeKI	GCWGC	4 cut(s)	142, 257, 298, 338
AsuHPI	GGTGA	3 cut(s)	19, 31, 373
BaeGI	GKGCMC	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	4 cut(s)	129, 269, 285, 325
BccI	CCATC	3 cut(s)	32, 212, 352
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	6 cut(s)	140, 143, 258, 299, 336, 339
BlsI	GCNGC	6 cut(s)	141, 144, 259, 300, 337, 340
BmiI	GGNNCC	3 cut(s)	10, 103, 155
BmrI	ACTGGG	2 cut(s)	135, 275
BmsI	GCATC	2 cut(s)	63, 195
BmuI	ACTGGG	2 cut(s)	135, 275
BpmI	CTGGAG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 245
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	130, 281, 314
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	97, 245
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	3 cut(s)	130, 281, 314
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	129, 269, 285, 325
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	5, 139, 175
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	6, 160
BslI	CCNNNNNNNGG	2 cut(s)	97, 245
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	5, 139, 175
Bsp1286I	GDGCHC	2 cut(s)	104, 170
Bsp143I	GATC	5 cut(s)	8, 58, 94, 106, 111
BspACI	CCGC	3 cut(s)	130, 140, 335
BspANI	GGCC	3 cut(s)	5, 139, 175
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	10, 103, 155
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	3 cut(s)	3, 16, 119
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	130, 281, 314
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	5 cut(s)	8, 58, 94, 106, 111
Bst4CI	ACNGT	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	5 cut(s)	11, 61, 97, 109, 114
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	5 cut(s)	8, 58, 94, 106, 111
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 151, 160, 344
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	129, 269, 285, 325
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	5, 139, 175
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	159
CviAII	CATG	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	5 cut(s)	10, 60, 96, 108, 113
DpnII	GATC	5 cut(s)	8, 58, 94, 106, 111
EaeI	YGGCCR	2 cut(s)	3, 137
Eco24I	GRGCYC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	1 cut(s)	209
FaiI	YATR	4 cut(s)	207, 266, 309, 320
FatI	CATG	1 cut(s)	205
FauI	CCCGC	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	6 cut(s)	140, 143, 258, 299, 336, 339
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	6 cut(s)	140, 143, 258, 299, 336, 339
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	6 cut(s)	140, 143, 258, 299, 336, 339
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	5, 139, 175
HapII	CCGG	2 cut(s)	6, 160
Hin1II	CATG	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	6, 160
HphI	GGTGA	3 cut(s)	19, 31, 373
Hpy166II	GTNNAC	3 cut(s)	168, 197, 231
Hpy188I	TCNGA	3 cut(s)	106, 111, 355
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	168, 197, 231
HpyAV	CCTTC	2 cut(s)	52, 358
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	145, 168, 186, 236, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 151, 160, 344
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	209
Kzo9I	GATC	5 cut(s)	8, 58, 94, 106, 111
LmnI	GCTCC	4 cut(s)	107, 124, 159, 316
LpnPI	CCDG	7 cut(s)	19, 83, 111, 173, 294, 327, 327
Lsp1109I	GCAGC	4 cut(s)	129, 269, 285, 325
LweI	GCATC	2 cut(s)	63, 195
MaeI	CTAG	1 cut(s)	92
MalI	GATC	5 cut(s)	10, 60, 96, 108, 113
MboI	GATC	5 cut(s)	8, 58, 94, 106, 111
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	104, 170
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	44, 47, 191, 325
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	6, 160
MwoI	GCNNNNNNNGC	4 cut(s)	136, 151, 160, 344
NdeII	GATC	5 cut(s)	8, 58, 94, 106, 111
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	3 cut(s)	10, 103, 155
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PkrI	GCNGC	6 cut(s)	141, 144, 259, 300, 337, 340
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	3 cut(s)	10, 103, 155
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	229
SatI	GCNGC	6 cut(s)	140, 143, 258, 299, 336, 339
Sau3AI	GATC	5 cut(s)	8, 58, 94, 106, 111
SchI	GAGTC	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	104, 170
SetI	ASST	3 cut(s)	36, 44, 262
SfaNI	GCATC	2 cut(s)	63, 195
SfcI	CTRYAG	1 cut(s)	143
SsiI	CCGC	3 cut(s)	130, 140, 335
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	49, 230
TauI	GCSGC	2 cut(s)	142, 338
TseI	GCWGC	4 cut(s)	142, 257, 298, 338
TspDTI	ATGAA	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.