Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Reverse (-)

38532788 .. 38533199

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTACACCCCGGGCGCATATAAATGGGTTGGCTCTTGGGTTTGGATACCACACTCGCTCTTCTTTGCACACCAGATCGGAGGCCTTGATTTCTTACCCCTGTTCGCGAAACGCATCTGTCAGACTGTTGGTGTCGAACCCAAAACTAGTGAGGAGTCATCCTTTCAAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

58

Amino Acids

6.6

Weight (kDa)

6.7

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	17
AsuC2I	CCSGG	2 cut(s)	11, 12
AvaI	CYCGRG	1 cut(s)	10
BciVI	GTATCC	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	11, 12
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	11, 12
BmeT110I	CYCGRG	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	11, 12
BmsI	GCATC	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	11, 12
BsaJI	CCNNGG	2 cut(s)	9, 10
BseDI	CCNNGG	2 cut(s)	9, 10
BseGI	GGATG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	11
BsnI	GGCC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	107
BspANI	GGCC	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	2 cut(s)	9, 10
BssMI	GATC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	3
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	9, 10
BstUI	CGCG	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	158
BtuMI	TCGCGA	1 cut(s)	107
CfoI	GCGC	1 cut(s)	17
Cfr9I	CCCGGG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	2 cut(s)	33, 84
CviKI_1	RGCY	2 cut(s)	33, 84
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	10
FaiI	YATR	2 cut(s)	19, 21
FokI	GGATG	1 cut(s)	145
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	80, 123
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	68
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	65
LpnPI	CCDG	3 cut(s)	24, 86, 113
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	147
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	172
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	2 cut(s)	74, 145
MslI	CAYNNNNRTG	1 cut(s)	22
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	11, 12
MunI	CAATTG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	107
NciI	CCSGG	2 cut(s)	11, 12
NdeII	GATC	1 cut(s)	75
NruI	TCGCGA	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
RruI	TCGCGA	1 cut(s)	107
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	11, 12
SfaNI	GCATC	1 cut(s)	123
SmaI	CCCGGG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	22
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	9, 10
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	3
TspMI	CCCGGG	1 cut(s)	10
XmaI	CCCGGG	1 cut(s)	10
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.