Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Forward (+)

58375732 .. 58376582

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGGAGGTGAAACCTGCTGGAGCTCTGGTCAGGAAGGAGTTGGTGTTCGAGCCTTTATCAGAGGACTCCCTGAGGCTCTGGTGCCAGAAGCTCCTCGAATTCATTGATTCTCTCGGACAACCAAATAGGCTGTTTGTTTTTGTGAATCTGTTTGGAGGGAGCAAATCGACTTCGAAGATTTTTGTTGATGAAGTGAAGCCGCTTTTTGATGATGCTGTTGTTCAGTTTACACTGCAAGGCAAGTACAGAAAGAATACCAAAATTGTTGGAGTATGGTTCATGTATTGGGCAAATATGAGAGTTGTTGGTTTTGGTGCTTTGAAATACTATCTTCTCCTTGGGTTGTGTGGTGAGAGAGGAATAAAAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000325 GO:0001101 GO:0001558 GO:0001727 GO:0001932 GO:0001934 GO:0001959 GO:0003376 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006457 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006793 GO:0006796 GO:0006807 GO:0006937 GO:0006940 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008284 GO:0008289 GO:0008481 GO:0008610 GO:0009056 GO:0009058 GO:0009705 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010799 GO:0010800 GO:0010803 GO:0010941 GO:0016020 GO:0016042 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0017076 GO:0019219 GO:0019220 GO:0019222 GO:0019722 GO:0019751 GO:0019899 GO:0019902 GO:0019903 GO:0019932 GO:0022603 GO:0023051 GO:0023052 GO:0023056 GO:0030148 GO:0030149 GO:0030258 GO:0030307 GO:0030334 GO:0030335 GO:0030554 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032870 GO:0032879 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0035556 GO:0035639 GO:0036094 GO:0038023 GO:0038036 GO:0040008 GO:0040012 GO:0040017 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044057 GO:0044093 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045125 GO:0045765 GO:0045766 GO:0045787 GO:0045927 GO:0045931 GO:0045933 GO:0045937 GO:0045987 GO:0046165 GO:0046173 GO:0046466 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0046521 GO:0046834 GO:0046872 GO:0048145 GO:0048146 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051270 GO:0051272 GO:0051716 GO:0051721 GO:0051726 GO:0060089 GO:0060255 GO:0060548 GO:0060759 GO:0065007 GO:0065009 GO:0070300 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0090257 GO:0090351 GO:0090520 GO:0097159 GO:0097164 GO:0097305 GO:0097306 GO:0097367 GO:0098588 GO:0098805 GO:1901222 GO:1901224 GO:1901265 GO:1901342 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903320 GO:1903322 GO:1903506 GO:1904018 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04020 ko04071 ko04072 ko04370 ko04371 ko04666 ko05152 map00600 map01100 map04020 map04071 map04072 map04370 map04371 map04666 map05152

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

125

Amino Acids

14.31

Weight (kDa)

9.14

Isoelectric Point (pI)

14.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	2 cut(s)	5, 203
AcsI	RAATTY	2 cut(s)	101, 371
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	325
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	2 cut(s)	26, 94
AluI	AGCT	2 cut(s)	26, 94
Alw21I	GWGCWC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	101, 371
AsuHPI	GGTGA	2 cut(s)	22, 365
AsuII	TTCGAA	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	340
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 32, 45, 62
Bse21I	CCTNAGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	5, 203
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	74
Bsu36I	CCTNAGG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	6 cut(s)	26, 55, 79, 94, 133, 202
CviKI_1	RGCY	6 cut(s)	26, 55, 79, 94, 133, 202
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	286
FaiI	YATR	3 cut(s)	277, 284, 299
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	42
Hin1II	CATG	1 cut(s)	286
HinfI	GANTC	3 cut(s)	68, 110, 148
HphI	GGTGA	2 cut(s)	22, 365
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	64, 119
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	23, 99, 162
LpnPI	CCDG	7 cut(s)	6, 14, 19, 30, 67, 86, 101
LweI	GCATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	190, 326
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	101, 264, 371
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	58, 69, 107, 152, 353
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	110, 148
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	28
SatI	GCNGC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	4 cut(s)	12, 19, 28, 96
SfaNI	GCATC	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	176
Sse9I	AATT	3 cut(s)	101, 264, 371
SsiI	CCGC	2 cut(s)	5, 203
SstI	GAGCTC	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	340
TaqI	TCGA	4 cut(s)	51, 99, 170, 176
TasI	AATT	3 cut(s)	101, 264, 371
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	110, 148
TscAI	CASTG	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	94, 207, 271
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	2 cut(s)	101, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.