Rh2CG299300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006398
Physical Location & Seq
Forward (+)
34721073 .. 34726875
5803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG299300.1

Sequence Viewer

Length: 582 bp
ATGGGCCCCAAAAGTGATTTTGGCACCCAACAAGAAGTAGGCACCACGACCTTTCCGTCACGGGCGTTTGTCCCGGTCACGACCACCATCGCCGGCATGCTACTAGCAGACCACTCCGACGAGCTCACAGATCGGAGCCCCTCTCCGGCAGGATCCACTTTCCAGACCATCACCAACCTCCTCACCTTCATTCGACCAAATGATCGGTGGTCGATGATGCTCTCCAACACATCCCTAGATCGGGGCTCTGATCGGATCGTCACTCCAACTGGGCGGTTGGCCTCCATGTTCACACCACGAGGTGCTTTGGCCAGGGCCATCCCTCTGCAAGGCAGCCAAACTGACTTGGCTCAGATCAAGCCTTCACTTTCCAGCACCGACGGTAAGAGGACCAAGTGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCGAAGATCAGAATCGGAGTTCTAGTCGAAGGCGGAGGTGGAATCTGCTTTGGTCGGGAGCAGCGGAGTAGCTCTGGTCAAGAAGGACTTGGTGTTCGAGCCTTTATCAGAGGACTCCCAGAGGCTTTGGTGCCAGAAGCTTCTCAAATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.63

Weight (kDa)

9.42

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AccB1I GGYRCC 3 cut(s) 23, 41, 556
AciI CCGC 3 cut(s) 274, 459, 490
AclWI GGATC 3 cut(s) 147, 160, 263
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 145, 240, 241, 329
AjnI CCWGG 1 cut(s) 311
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
AluBI AGCT 3 cut(s) 124, 498, 566
AluI AGCT 3 cut(s) 124, 498, 566
Alw21I GWGCWC 1 cut(s) 126
AlwI GGATC 3 cut(s) 147, 160, 263
AoxI GGCC 4 cut(s) 4, 279, 309, 315
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 333, 487
ApoI RAATTY 1 cut(s) 573
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AspS9I GGNCC 5 cut(s) 4, 5, 315, 390, 425
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 163, 175
AvaII GGWCC 2 cut(s) 390, 425
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 152
BanI GGYRCC 3 cut(s) 23, 41, 556
BanII GRGCYC 5 cut(s) 8, 126, 140, 248, 414
BauI CACGAG 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 345, 499
BccI CCATC 3 cut(s) 95, 176, 326
BciT130I CCWGG 1 cut(s) 313
BcnI CCSGG 1 cut(s) 74
BfaI CTAG 3 cut(s) 104, 236, 449
BisI GCNGC 2 cut(s) 334, 488
BlsI GCNGC 2 cut(s) 335, 489
Bme1390I CCNGG 2 cut(s) 74, 313
Bme18I GGWCC 2 cut(s) 390, 425
BmgT120I GGNCC 5 cut(s) 4, 5, 315, 390, 425
BmiI GGNNCC 8 cut(s) 6, 7, 25, 43, 137, 154, 426, 558
BmrFI CCNGG 2 cut(s) 74, 313
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 240, 241, 329
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 230, 318
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 4 cut(s) 145, 240, 241, 329
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 345, 499
BshFI GGCC 4 cut(s) 6, 281, 311, 317
BshNI GGYRCC 3 cut(s) 23, 41, 556
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 3 cut(s) 74, 93, 146
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 4 cut(s) 145, 240, 241, 329
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 4 cut(s) 6, 281, 311, 317
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 5 cut(s) 8, 126, 140, 248, 414
Bsp143I GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
BspACI CCGC 3 cut(s) 274, 459, 490
BspANI GGCC 4 cut(s) 6, 281, 311, 317
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 8 cut(s) 6, 7, 25, 43, 137, 154, 426, 558
BspPI GGATC 3 cut(s) 147, 160, 263
BspT107I GGYRCC 3 cut(s) 23, 41, 556
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 94, 98
BstDEI CTNAG 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 230, 318
BstKTI GATC 8 cut(s) 133, 155, 205, 241, 253, 258, 357, 435
BstMBI GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 72, 311
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 345, 499
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 4 cut(s) 6, 281, 311, 317
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 230, 318
Cac8I GCNNGC 2 cut(s) 94, 98
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 4, 5, 315, 390, 425
CviAII CATG 2 cut(s) 97, 286
DdeI CTNAG 1 cut(s) 351
DpnI GATC 8 cut(s) 132, 154, 204, 240, 252, 257, 356, 434
DpnII GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
DraIII CACNNNGTG 1 cut(s) 302
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 309
EciI GGCGGA 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 124
Eco24I GRGCYC 5 cut(s) 8, 126, 140, 248, 414
Eco47I GGWCC 2 cut(s) 390, 425
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 311
EcoT38I GRGCYC 5 cut(s) 8, 126, 140, 248, 414
FaeI CATG 2 cut(s) 100, 289
FaiI YATR 2 cut(s) 98, 287
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 96, 285
Fnu4HI GCNGC 2 cut(s) 334, 488
FokI GGATG 2 cut(s) 217, 305
FriOI GRGCYC 5 cut(s) 8, 126, 140, 248, 414
Fsp4HI GCNGC 2 cut(s) 334, 488
FspBI CTAG 3 cut(s) 104, 236, 449
GluI GCNGC 2 cut(s) 334, 488
HaeIII GGCC 4 cut(s) 6, 281, 311, 317
HapII CCGG 3 cut(s) 74, 93, 146
Hin1II CATG 2 cut(s) 100, 289
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 3 cut(s) 438, 468, 540
HpaII CCGG 3 cut(s) 74, 93, 146
HphI GGTGA 2 cut(s) 163, 175
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 9 cut(s) 118, 135, 250, 255, 354, 429, 437, 443, 536
Hpy188III TCNNGA 4 cut(s) 79, 163, 482, 506
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 2 cut(s) 122, 383
HpyAV CCTTC 4 cut(s) 196, 372, 449, 503
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 2 cut(s) 100, 289
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
LmnI GCTCC 2 cut(s) 135, 484
Lsp1109I GCAGC 2 cut(s) 345, 499
LweI GCATC 1 cut(s) 207
MaeI CTAG 3 cut(s) 104, 236, 449
MaeIII GTNAC 3 cut(s) 57, 76, 259
MalI GATC 8 cut(s) 132, 154, 204, 240, 252, 257, 356, 434
MboI GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
MboII GAAGA 1 cut(s) 442
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 5 cut(s) 8, 126, 140, 248, 414
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 1 cut(s) 573
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 3 cut(s) 141, 249, 290
Mox20I TGGCCA 1 cut(s) 311
MroNI GCCGGC 1 cut(s) 92
MscI TGGCCA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 490
MspI CCGG 3 cut(s) 74, 93, 146
MspR9I CCNGG 2 cut(s) 74, 313
MvaI CCWGG 1 cut(s) 313
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 74
NdeII GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 100, 289
NlaIV GGNNCC 8 cut(s) 6, 7, 25, 43, 137, 154, 426, 558
NmuCI GTSAC 3 cut(s) 57, 76, 259
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 438, 468
PkrI GCNGC 2 cut(s) 335, 489
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 8 cut(s) 6, 7, 25, 43, 137, 154, 426, 558
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 5 cut(s) 4, 5, 315, 390, 425
PsuI RGATCY 1 cut(s) 152
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 2 cut(s) 334, 488
Sau3AI GATC 8 cut(s) 130, 152, 202, 238, 250, 255, 354, 432
Sau96I GGNCC 5 cut(s) 4, 5, 315, 390, 425
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 2 cut(s) 74, 313
SduI GDGCHC 5 cut(s) 8, 126, 140, 248, 414
SetI ASST 9 cut(s) 53, 126, 180, 188, 304, 405, 466, 500, 568
SfaNI GCATC 1 cut(s) 207
SinI GGWCC 2 cut(s) 390, 425
SphI GCATGC 1 cut(s) 100
Sse9I AATT 1 cut(s) 573
SsiI CCGC 3 cut(s) 274, 459, 490
SspMI CTAG 3 cut(s) 104, 236, 449
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 72, 311
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 4 cut(s) 193, 212, 453, 523
TasI AATT 1 cut(s) 573
TfiI GAWTC 2 cut(s) 438, 468
TseFI GTSAC 3 cut(s) 57, 76, 259
TseI GCWGC 2 cut(s) 333, 487
Tsp45I GTSAC 3 cut(s) 57, 76, 259
TspDTI ATGAA 2 cut(s) 178, 566
TspGWI ACGGA 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 390, 425
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 1 cut(s) 573
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 3 cut(s) 104, 236, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.