Rh3BG314800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006398
Physical Location & Seq
Forward (+)
32065615 .. 32068644
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG314800.1

Sequence Viewer

Length: 279 bp
ATGATACTCTCCAAAACAGCCATAGATCGGGGCTCCGATCAGATCGTCACTCTAACTGGGCGGTTGGCCTTCATCTTCACACCACTGGGTGCTTTGGTCAGCGCCATCCCCTCTGCAGGGTTCATCGCCACTCTTCTCCAAGTACAAAGGCCATGCTTGTACCCCGATCAGATTGCCTATATCTACTCCTTCAGTCGCTTCCTGCCTGGCCGGGATCAAATCCGATCTTCCGCCATCTTGCTCGAGACACCAGCAGCGACCCCCTTTCCCTTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.02

Weight (kDa)

9.1

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 61, 231
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 175
AdeI CACNNNGTG 1 cut(s) 89
AfaI GTAC 2 cut(s) 144, 161
AfiI CCNNNNNNNGG 3 cut(s) 27, 116, 117
AjnI CCWGG 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 3 cut(s) 66, 149, 208
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 242
BanII GRGCYC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 266
BccI CCATC 2 cut(s) 113, 242
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 207, 212
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 2 cut(s) 207, 212
BmrI ACTGGG 2 cut(s) 66, 95
BmuI ACTGGG 2 cut(s) 66, 95
BpuMI CCSGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 116, 117
Bse1I ACTGG 2 cut(s) 61, 90
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 27, 116, 117
BseNI ACTGG 2 cut(s) 61, 90
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 3 cut(s) 68, 151, 210
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 3 cut(s) 27, 116, 117
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 3 cut(s) 68, 151, 210
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 6 cut(s) 25, 37, 42, 166, 214, 224
BspACI CCGC 2 cut(s) 61, 231
BspANI GGCC 3 cut(s) 68, 151, 210
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 222
BsrI ACTGG 2 cut(s) 61, 90
BssMI GATC 6 cut(s) 25, 37, 42, 166, 214, 224
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 6 cut(s) 28, 40, 45, 169, 217, 227
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 6 cut(s) 25, 37, 42, 166, 214, 224
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 205, 210
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 266
BsuRI GGCC 3 cut(s) 68, 151, 210
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 143, 160
CviAII CATG 1 cut(s) 153
CviJI RGCY 5 cut(s) 20, 33, 68, 151, 210
CviKI_1 RGCY 5 cut(s) 20, 33, 68, 151, 210
CviQI GTAC 2 cut(s) 143, 160
DpnI GATC 6 cut(s) 27, 39, 44, 168, 216, 226
DpnII GATC 6 cut(s) 25, 37, 42, 166, 214, 224
DraIII CACNNNGTG 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 1 cut(s) 156
FaiI YATR 3 cut(s) 23, 154, 180
FatI CATG 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 255
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 68, 151, 210
HapII CCGG 1 cut(s) 211
HhaI GCGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 156
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HpaII CCGG 1 cut(s) 211
Hpy188I TCNGA 4 cut(s) 37, 42, 171, 224
Hpy188III TCNNGA 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 79, 199
HpyCH4V TGCA 1 cut(s) 116
Hsp92II CATG 1 cut(s) 156
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 6 cut(s) 25, 37, 42, 166, 214, 224
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 8 cut(s) 42, 71, 102, 192, 215, 219, 224, 264
Lsp1109I GCAGC 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 46
MalI GATC 6 cut(s) 27, 39, 44, 168, 216, 226
MboI GATC 6 cut(s) 25, 37, 42, 166, 214, 224
MboII GAAGA 3 cut(s) 67, 125, 219
MhlI GDGCHC 1 cut(s) 35
MnlI CCTC 1 cut(s) 121
MseI TTAA 1 cut(s) 277
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 207, 212
MvaI CCWGG 1 cut(s) 207
NciI CCSGG 1 cut(s) 212
NdeII GATC 6 cut(s) 25, 37, 42, 166, 214, 224
NlaIII CATG 1 cut(s) 156
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 242
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 2 cut(s) 144, 161
RsaNI GTAC 2 cut(s) 143, 160
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 6 cut(s) 25, 37, 42, 166, 214, 224
ScrFI CCNGG 2 cut(s) 207, 212
SduI GDGCHC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 2 cut(s) 61, 231
StyD4I CCNGG 2 cut(s) 205, 210
TaqI TCGA 1 cut(s) 243
TatI WGTACW 1 cut(s) 142
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 61, 112
TspRI CASTG 1 cut(s) 90
XhoI CTCGAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.