Rh5DG240300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006398
Physical Location & Seq
Forward (+)
27415431 .. 27417130
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG240300.1

Sequence Viewer

Length: 348 bp
ATGAAATCATCTTTCATGGTTTTTGAAAAAGAGCACTTGGGCACTCTGATGCAGGGTCATGCTCCTGCATACTTAATTGTGGATACGGTTTCAGAGTTTCTTCACGAACATAAGAGGACCAAGAGGGAGGTCATCGAGAAGGAGATCATCGGGCTCAAATTGGAGGGTCCGAAGATCAGAGTCGGAGCTCTGGTAGAAGCGGAGGTGAAACCTGCTAGAGCTCTGGTCAGGAAGGCCAGGACTTGGTGTTCGAGTCTTTATCAGATGACTCCCAGAGGTTCTAGAGCCAGAAGCTCCTTTAATTCATTGATTCTCTCGGACGGCCAAAGAGGCTGTTTGTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

9.79

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 232, 264
AluBI AGCT 3 cut(s) 188, 221, 294
AluI AGCT 3 cut(s) 188, 221, 294
Alw21I GWGCWC 3 cut(s) 36, 190, 223
AoxI GGCC 2 cut(s) 234, 322
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
AspS9I GGNCC 2 cut(s) 117, 167
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 2 cut(s) 117, 167
BaeGI GKGCMC 1 cut(s) 44
BanII GRGCYC 3 cut(s) 156, 190, 223
Bbv12I GWGCWC 3 cut(s) 36, 190, 223
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 1 cut(s) 76
BfaI CTAG 2 cut(s) 216, 282
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 76
BglI GCCNNNNNGGC 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 2 cut(s) 117, 167
BmgT120I GGNCC 2 cut(s) 117, 167
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 44
BshFI GGCC 2 cut(s) 236, 324
BsiHKAI GWGCWC 3 cut(s) 36, 190, 223
BslI CCNNNNNNNGG 1 cut(s) 243
BsnI GGCC 2 cut(s) 236, 324
Bsp1286I GDGCHC 5 cut(s) 36, 44, 156, 190, 223
Bsp143I GATC 2 cut(s) 144, 174
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 236, 324
BspLI GGNNCC 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 220
BssMI GATC 2 cut(s) 144, 174
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 88
BstKTI GATC 2 cut(s) 147, 177
BstMBI GATC 2 cut(s) 144, 174
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 44
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 2 cut(s) 236, 324
BveI ACCTGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 117, 167
CviAII CATG 2 cut(s) 16, 59
CviJI RGCY 8 cut(s) 154, 188, 221, 236, 287, 294, 324, 333
CviKI_1 RGCY 8 cut(s) 154, 188, 221, 236, 287, 294, 324, 333
DpnI GATC 2 cut(s) 146, 176
DpnII GATC 2 cut(s) 144, 174
EaeI YGGCCR 1 cut(s) 322
Ecl136II GAGCTC 2 cut(s) 188, 221
Eco24I GRGCYC 3 cut(s) 156, 190, 223
Eco47I GGWCC 2 cut(s) 117, 167
Eco53kI GAGCTC 2 cut(s) 188, 221
EcoICRI GAGCTC 2 cut(s) 188, 221
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 3 cut(s) 156, 190, 223
FaeI CATG 2 cut(s) 19, 62
FaiI YATR 4 cut(s) 17, 60, 70, 111
FatI CATG 2 cut(s) 15, 58
FriOI GRGCYC 3 cut(s) 156, 190, 223
FspBI CTAG 2 cut(s) 216, 282
HaeIII GGCC 2 cut(s) 236, 324
Hin1II CATG 2 cut(s) 19, 62
HinfI GANTC 4 cut(s) 180, 253, 268, 310
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 7 cut(s) 48, 94, 171, 179, 185, 264, 319
Hpy188III TCNNGA 4 cut(s) 104, 136, 229, 282
HpyAV CCTTC 2 cut(s) 133, 226
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 52, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 19, 62
Kzo9I GATC 2 cut(s) 144, 174
LmnI GCTCC 3 cut(s) 67, 185, 299
LweI GCATC 1 cut(s) 39
MaeI CTAG 2 cut(s) 216, 282
MalI GATC 2 cut(s) 146, 176
MboI GATC 2 cut(s) 144, 174
MboII GAAGA 2 cut(s) 92, 184
MhlI GDGCHC 5 cut(s) 36, 44, 156, 190, 223
MluCI AATT 3 cut(s) 75, 158, 301
MlyI GAGTC 3 cut(s) 189, 262, 262
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 7 cut(s) 108, 117, 121, 157, 196, 269, 323
MseI TTAA 2 cut(s) 74, 300
MslI CAYNNNNRTG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeII GATC 2 cut(s) 144, 174
NlaIII CATG 2 cut(s) 19, 62
NlaIV GGNNCC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 310
PflMI CCANNNNNTGG 1 cut(s) 243
PleI GAGTC 3 cut(s) 188, 261, 262
PpsI GAGTC 3 cut(s) 188, 261, 262
Psp124BI GAGCTC 2 cut(s) 190, 223
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 117, 167
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 2 cut(s) 190, 223
SaqAI TTAA 2 cut(s) 74, 300
Sau3AI GATC 2 cut(s) 144, 174
Sau96I GGNCC 2 cut(s) 117, 167
SchI GAGTC 3 cut(s) 189, 262, 262
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 5 cut(s) 36, 44, 156, 190, 223
SetI ASST 7 cut(s) 132, 190, 207, 214, 223, 280, 296
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 2 cut(s) 117, 167
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 3 cut(s) 75, 158, 301
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 216, 282
SstI GAGCTC 2 cut(s) 190, 223
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 135, 251
TasI AATT 3 cut(s) 75, 158, 301
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 74, 300
Tru9I TTAA 2 cut(s) 74, 300
TspDTI ATGAA 3 cut(s) 4, 17, 294
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 117, 167
XbaI TCTAGA 1 cut(s) 281
XspI CTAG 2 cut(s) 216, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.