Rh5AG418700

Sphingosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006398
Physical Location & Seq
Forward (+)
72082021 .. 72096425
14405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG418700.1

Sequence Viewer

Length: 483 bp
ATGAGTTGGGATATTGATGATGATCGTCTACGTGCGTCTGTATGGGAACCGGTGGTGGGACGAATGGGATTGTGCCACGTGGATCGTCTAGTGGAAACAGGCGGCGTGCTAATAGATTCTAGTAGGAAGGACTTGGTGTTCGAGCCTTTATCAGAGGACTCCCAGAGGCTCTGGTGCCAGAAGCTCCTTGAATTCATTGATTCTCTCGGACGGCCAAAGAGGCTGTTTGTTTTTGTGAATCCGTTTGGAGGGAGCAAATCGGCTTCGAAGATTTTTGTTGATGAAGTGAAGCCGCTTTTTGATGATGCTGTTGTTCAGTTTACATTCCAAGGAGTGTTGAAGAAATTAAAAGAAGTCATCCTGAAGAAATTGAAAACTGCAATAGCATTCGAGATTGCAAGAATTATATGGAACAATGGCTGTCTTCTCTTCAAAACTTTGATGCCTCAATTAGCTGATATCTTTGGAGGATTATCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0000325 GO:0001101 GO:0001558 GO:0001727 GO:0001932 GO:0001934 GO:0001959 GO:0003376 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006457 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006793 GO:0006796 GO:0006807 GO:0006937 GO:0006940 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008284 GO:0008289 GO:0008481 GO:0008610 GO:0009056 GO:0009058 GO:0009705 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010799 GO:0010800 GO:0010803 GO:0010941 GO:0016020 GO:0016042 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0017076 GO:0019219 GO:0019220 GO:0019222 GO:0019722 GO:0019751 GO:0019899 GO:0019902 GO:0019903 GO:0019932 GO:0022603 GO:0023051 GO:0023052 GO:0023056 GO:0030148 GO:0030149 GO:0030258 GO:0030307 GO:0030334 GO:0030335 GO:0030554 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032870 GO:0032879 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0035556 GO:0035639 GO:0036094 GO:0038023 GO:0038036 GO:0040008 GO:0040012 GO:0040017 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044057 GO:0044093 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045125 GO:0045765 GO:0045766 GO:0045787 GO:0045927 GO:0045931 GO:0045933 GO:0045937 GO:0045987 GO:0046165 GO:0046173 GO:0046466 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0046521 GO:0046834 GO:0046872 GO:0048145 GO:0048146 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051270 GO:0051272 GO:0051716 GO:0051721 GO:0051726 GO:0060089 GO:0060255 GO:0060548 GO:0060759 GO:0065007 GO:0065009 GO:0070300 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0090257 GO:0090351 GO:0090520 GO:0097159 GO:0097164 GO:0097305 GO:0097306 GO:0097367 GO:0098588 GO:0098805 GO:1901222 GO:1901224 GO:1901265 GO:1901342 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903320 GO:1903322 GO:1903506 GO:1904018 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04020 ko04071 ko04072 ko04370 ko04371 ko04666 ko05152 map00600 map01100 map04020 map04071 map04072 map04370 map04371 map04666 map05152
Pfam Domains
Protein Families
DAGK_cat

Protein Analysis

160

Amino Acids

18.12

Weight (kDa)

7.68

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 28
AciI CCGC 2 cut(s) 102, 293
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 56, 248
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 4 cut(s) 191, 340, 373, 433
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 184, 455
AluI AGCT 2 cut(s) 184, 455
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AsiGI ACCGGT 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 227
BfaI CTAG 2 cut(s) 89, 120
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 103, 293
BlsI GCNGC 2 cut(s) 104, 294
BmiI GGNNCC 2 cut(s) 48, 176
BmsI GCATC 2 cut(s) 295, 432
BpiI GAAGAC 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 32, 79
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 248
Bse118I RCCGGY 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 56, 248
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 174
BshTI ACCGGT 1 cut(s) 49
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 56, 248
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 22, 82
BspACI CCGC 2 cut(s) 102, 293
BspANI GGCC 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 48, 176
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 22, 82
BssT1I CCWWGG 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 434
BstBAI YACGTR 2 cut(s) 32, 79
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 2 cut(s) 25, 85
BstMBI GATC 2 cut(s) 22, 82
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 416
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 49
CseI GACGC 1 cut(s) 24
CspAI ACCGGT 1 cut(s) 49
CviJI RGCY 9 cut(s) 145, 169, 184, 214, 223, 263, 292, 420, 455
CviKI_1 RGCY 9 cut(s) 145, 169, 184, 214, 223, 263, 292, 420, 455
DpnI GATC 2 cut(s) 24, 84
DpnII GATC 2 cut(s) 22, 82
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 328
Eco32I GATATC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 191
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaiI YATR 3 cut(s) 43, 407, 409
FaqI GGGAC 1 cut(s) 72
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 103, 293
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 103, 293
FspBI CTAG 2 cut(s) 89, 120
GluI GCNGC 2 cut(s) 103, 293
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 24
HinfI GANTC 4 cut(s) 116, 158, 200, 238
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 29, 321
Hpy188I TCNGA 2 cut(s) 154, 209
Hpy188III TCNNGA 2 cut(s) 361, 391
Hpy8I GTNNAC 2 cut(s) 29, 321
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 31, 78
HpyCH4V TGCA 2 cut(s) 380, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpySE526I ACGT 2 cut(s) 31, 78
Kzo9I GATC 2 cut(s) 22, 82
LmnI GCTCC 2 cut(s) 189, 252
LpnPI CCDG 6 cut(s) 63, 84, 157, 176, 191, 374
LweI GCATC 2 cut(s) 295, 432
MaeI CTAG 2 cut(s) 89, 120
MaeII ACGT 2 cut(s) 31, 78
MalI GATC 2 cut(s) 24, 84
MboI GATC 2 cut(s) 22, 82
MboII GAAGA 5 cut(s) 280, 352, 376, 416, 421
MluCI AATT 5 cut(s) 191, 344, 368, 402, 449
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 6 cut(s) 148, 159, 213, 242, 456, 461
MseI TTAA 1 cut(s) 347
MspI CCGG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 22, 82
NlaIV GGNNCC 2 cut(s) 48, 176
NspV TTCGAA 1 cut(s) 266
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 3 cut(s) 116, 200, 238
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 2 cut(s) 104, 294
PleI GAGTC 1 cut(s) 152
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 2 cut(s) 32, 79
PspCI CACGTG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 48, 176
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 2 cut(s) 103, 293
Sau3AI GATC 2 cut(s) 22, 82
SchI GAGTC 1 cut(s) 152
SetI ASST 4 cut(s) 34, 81, 186, 457
SfaNI GCATC 2 cut(s) 295, 432
SfuI TTCGAA 1 cut(s) 266
Sse9I AATT 5 cut(s) 191, 344, 368, 402, 449
SsiI CCGC 2 cut(s) 102, 293
SspMI CTAG 2 cut(s) 89, 120
StyI CCWWGG 1 cut(s) 328
TaiI ACGT 2 cut(s) 34, 81
TaqI TCGA 3 cut(s) 141, 266, 390
TasI AATT 5 cut(s) 191, 344, 368, 402, 449
TauI GCSGC 2 cut(s) 105, 295
TfiI GAWTC 3 cut(s) 116, 200, 238
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 184, 297
TspGWI ACGGA 2 cut(s) 231, 466
XapI RAATTY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 2 cut(s) 89, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.