Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006398

Physical Location & Seq

Genomic Coordinates Reverse (-)

31040885 .. 31054294

Gene Structure 13410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG248700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCAGTCACCGGAAGAGGTTATCCGCTGATCTGCCCTTCTGTGCAGCACCGCAACCGCCTGGATATTGCTCATCTGGGATGCAGCCTTTCCGGTCGTCAACATCTGAGATCGGAGCTCCTATCCGGCAGGATCCACTTTCCAGACCATCACCGACATCCTCACCTTCATTCGACCAACAGATCAGTGGTCGATGATGCTCTCCAAAACATCCATATAGATTGGGGCTCCGATCAGATCATTGCTCCAACTGGGCGGTTGGCCTCCATCTTCACAGCACGAGGTGCTTTGGTCAGCGCCATCCCCTCTGCAGGGAACTGCCCCATGATCCGCTGCTGGCGGCGGCGGCGAAGTTTGTTTCATGACCTCCTTGGAAGACTTGTCCCACCTTCCAATGAGAACTCTCTGACCTTGTTTAATCTATCAGTACTATTGGAGGCTGCCATCACTGTGGTCCAAGATGATTTCAAAACTACCCGATTGGAGTCCATCAGAGCTAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.78

Weight (kDa)

10.24

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37540
rosa_chinensis	RchiOBHm_Chr1g0321461 RchiOBHm_Chr5g0059171
rosa_multiflora	Rmu_sc0002345.1_g000030
rosa_roxburghii	Rroxscaffold_6G00416530
rosa_samantha	Rh1AG358500 Rh2AG416400 Rh2BG513300 Rh2CG299300 Rh2DG336600 Rh2DG402900 Rh2DG525000 Rh3BG314800 Rh4AG356700 Rh4BG142100 Rh4DG361900 Rh5AG248700 Rh5AG418700 Rh5BG233400 Rh5BG397400 Rh5BG397500 Rh5CG421400 Rh5CG483900 Rh5DG240300 Rh7BG416300 Rh7BG416400
rosa_wichuraiana	Rw1G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	26, 52, 58, 256, 331, 340, 343, 346
AclWI	GGATC	3 cut(s)	127, 140, 322
AdeI	CACNNNGTG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	3 cut(s)	11, 311, 312
AgsI	TTSAA	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	118, 497
AluI	AGCT	2 cut(s)	118, 497
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	3 cut(s)	127, 140, 322
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	4 cut(s)	46, 84, 333, 440
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	143, 155
AvaII	GGWCC	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	120, 230
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	4 cut(s)	58, 96, 320, 427
BccI	CCATC	5 cut(s)	156, 275, 308, 452, 497
BciT130I	CCWGG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	7 cut(s)	47, 85, 334, 341, 344, 347, 441
BlsI	GCNGC	7 cut(s)	48, 86, 335, 342, 345, 348, 442
BmcAI	AGTACT	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	134, 229
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	71, 187
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	2 cut(s)	11, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 311, 312
Bse1I	ACTGG	2 cut(s)	5, 256
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	4 cut(s)	86, 157, 210, 300
BseLI	CCNNNNNNNGG	3 cut(s)	11, 311, 312
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	5, 256
BseXI	GCAGC	4 cut(s)	58, 96, 320, 427
BsgI	GTGCAG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	12, 93, 126
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	11, 311, 312
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	120, 230
Bsp143I	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
BspACI	CCGC	8 cut(s)	26, 52, 58, 256, 331, 340, 343, 346
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	134, 229
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	3 cut(s)	127, 140, 322
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	5, 256
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	107, 498
BstF5I	GGATG	4 cut(s)	86, 157, 210, 300
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	7 cut(s)	33, 113, 135, 185, 235, 240, 330
BstMBI	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 346
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	58, 96, 320, 427
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	4 cut(s)	86, 157, 210, 300
BtsIMutI	CAGTG	2 cut(s)	192, 447
Cac8I	GCNNGC	1 cut(s)	338
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	325, 362
CviJI	RGCY	6 cut(s)	87, 118, 228, 263, 440, 497
CviKI_1	RGCY	6 cut(s)	87, 118, 228, 263, 440, 497
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	2 cut(s)	107, 498
DpnI	GATC	7 cut(s)	32, 112, 134, 184, 234, 239, 329
DpnII	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
DraIII	CACNNNGTG	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	120, 230
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	120, 230
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	328, 365
FaiI	YATR	4 cut(s)	216, 218, 326, 363
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	324, 361
Fnu4HI	GCNGC	7 cut(s)	47, 85, 334, 341, 344, 347, 441
FokI	GGATG	4 cut(s)	93, 144, 197, 287
FriOI	GRGCYC	2 cut(s)	120, 230
Fsp4HI	GCNGC	7 cut(s)	47, 85, 334, 341, 344, 347, 441
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	7 cut(s)	47, 85, 334, 341, 344, 347, 441
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	3 cut(s)	12, 93, 126
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	328, 365
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	3 cut(s)	12, 93, 126
HphI	GGTGA	2 cut(s)	143, 155
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	6 cut(s)	108, 115, 232, 237, 408, 494
Hpy188III	TCNNGA	2 cut(s)	143, 362
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	48, 176, 399
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	3 cut(s)	46, 84, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 346
HpyF3I	CTNAG	2 cut(s)	107, 498
Hsp92II	CATG	2 cut(s)	328, 365
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
LmnI	GCTCC	4 cut(s)	115, 123, 233, 250
Lsp1109I	GCAGC	4 cut(s)	58, 96, 320, 427
LweI	GCATC	2 cut(s)	71, 187
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	7 cut(s)	32, 112, 134, 184, 234, 239, 329
MboI	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
MboII	GAAGA	3 cut(s)	27, 262, 387
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	2 cut(s)	120, 230
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	11, 171, 274, 275, 316, 377, 430
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	2 cut(s)	28, 333
MspI	CCGG	3 cut(s)	12, 93, 126
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	284, 346
NdeII	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
NlaIII	CATG	2 cut(s)	328, 365
NlaIV	GGNNCC	2 cut(s)	134, 229
NmuCI	GTSAC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	361
PkrI	GCNGC	7 cut(s)	48, 86, 335, 342, 345, 348, 442
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	134, 229
PspPI	GGNCC	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	7 cut(s)	47, 85, 334, 341, 344, 347, 441
Sau3AI	GATC	7 cut(s)	30, 110, 132, 182, 232, 237, 327
Sau96I	GGNCC	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	120, 230
SetI	ASST	9 cut(s)	22, 120, 168, 286, 369, 391, 413, 499, 504
SfaNI	GCATC	2 cut(s)	71, 187
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	449
SsiI	CCGC	8 cut(s)	26, 52, 58, 256, 331, 340, 343, 346
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	173, 192
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	3 cut(s)	343, 346, 349
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	2 cut(s)	192, 454
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	4 cut(s)	46, 84, 333, 440
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	158, 350
TspRI	CASTG	2 cut(s)	192, 454
VpaK11BI	GGWCC	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.