RchiOBHm_Chr1g0321461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006398
Physical Location & Seq
Forward (+)
8977645 .. 8978065
421 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55152

Sequence Viewer

Length: 294 bp
ATGTACGCCCAGGGCGCATATGAATGGGTTGGCTATAAGGTTTGGATACCACACTCGCTCTTCTCTACGCACCAGATTGGAGACCTTGACTTCATACCCCCCACTTGCGCTACGCGTCTATCACATTTGTTGGTGTCGAACCCAGAACCGGTGAGGAACCGTTCTTTCGAACTAATTGAATTGTTGGGTAAAACACTCCAGTTCATCCTTTGTTTAAATGTTGTCACCGATTGCTCTCTTTACTTTTCCACCGATGTCCGCCGCGACTCAATTGCTTTGTCTGCCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

6.24

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 115, 264
AciI CCGC 2 cut(s) 259, 262
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 113
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 75
AsiGI ACCGGT 1 cut(s) 148
AspLEI GCGC 2 cut(s) 17, 110
AsuHPI GGTGA 2 cut(s) 163, 217
AsuII TTCGAA 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 11
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 75
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 9, 10
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 10
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 199
Bsh1236I CGCG 2 cut(s) 115, 264
BshTI ACCGGT 1 cut(s) 148
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 168
BspACI CCGC 2 cut(s) 259, 262
BspFNI CGCG 2 cut(s) 115, 264
BspLI GGNNCC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 9, 10
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 168
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 2 cut(s) 115, 264
BstHHI GCGC 2 cut(s) 17, 110
BstMAI GTCTC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 14, 281
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstUI CGCG 2 cut(s) 115, 264
BsuI GTATCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 204
CfoI GCGC 2 cut(s) 17, 110
Cfr10I RCCGGY 1 cut(s) 148
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 148
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
CviQI GTAC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 9
FaiI YATR 4 cut(s) 19, 21, 36, 95
FauNDI CATATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 262
GlaI GCGC 2 cut(s) 16, 109
GluI GCNGC 1 cut(s) 262
GsuI CTGGAG 1 cut(s) 182
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 17, 110
Hin6I GCGC 2 cut(s) 15, 108
HinP1I GCGC 2 cut(s) 15, 108
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 163, 217
HpyCH4III ACNGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 281
HspAI GCGC 2 cut(s) 15, 108
LguI GCTCTTC 1 cut(s) 65
LpnPI CCDG 5 cut(s) 23, 86, 156, 162, 212
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 1 cut(s) 52
MfeI CAATTG 1 cut(s) 270
MluCI AATT 3 cut(s) 174, 179, 270
MluI ACGCGT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 1 cut(s) 147
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 22
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 11
MunI CAATTG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 2 cut(s) 115, 264
MwoI GCNNNNNNNGC 2 cut(s) 14, 281
NdeI CATATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 223
NspV TTCGAA 1 cut(s) 168
PasI CCCWGGG 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 158
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 1 cut(s) 262
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 11
SetI ASST 2 cut(s) 42, 87
SfuI TTCGAA 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 22
Sse9I AATT 3 cut(s) 174, 179, 270
SsiI CCGC 2 cut(s) 259, 262
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 137, 168
TasI AATT 3 cut(s) 174, 179, 270
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 36, 82, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.