FvH4_3g38510
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007618
Physical Location & Seq
Forward (+)
32864901 .. 32873142
8242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38510.t1

Sequence Viewer

Length: 4263 bp
ATGGCGGCGTCGAACGGGAGCGAGTACTTCGAATTGGGAGTCGAGGGGACGAGCGAGACGTTCGCGCGGCCGTCGAACGCCGAGTCGGTGGCGGAGGACGAGGAGGAGCTGATGTGGGCGGCGATCCGACGGCTGCCGTCGCAGAAGCAATCCAGCATCGCCATTCTCAAGTCGGAGAAGTCGGAGACCATCGACGTCCGGAAACTCGATCGCCAACGCCGTGAACTCGTCGTCAAGAAAGCCCTCGCCACTAACGACCAGGACAACCACCGCCTCCTCTCCGCCATTAAAGAACGCCTCGACAGAGTGGAATTGGAGGTTCGAAAAGTGGAAGTGCGGTACGAGAATCTGAATGTAGTAGCAGACGTTCAAACAGGATCAAGAGCTTTGCCTACTCTCATTAACTATACTCGTGATGGTATAGAGAGTATTTTAACTAGTTTGAGGATTTTTAAACCCAAGAGACGGTCTTTAACAATCTTGAACAACATCAGCGGCGTTATCAAACCTGGAAGGATGACTTTGCTTTTAGGACCCCCAAGTTCTGGCAAATCCACTTTGCTCATGACTCTTGCAGGAAAACTGGACGGCGACTTAAAGAAAAGTGGTAGCATTACCTACAATGGCCATAGGCCTGATGAGTTCTGCATTCAAAGAACTGCTGCTTACATAAGCCAAACAGATAATCACATTGCAGAACTCACCGTGAGAGAAACCTTAGACTTTGCAGCTAGATGTCAAGGCGCCAGCGAAGGTTTTGCAGCGTATATGAAAGAGCTGGTCAAATTAGAGAAGGAAAAAAACATAAGGCCAGATCCAGAAATTGATGCATTCATGAAGGCATCATCTGTTGGTGGTAAGCACAGTATCACAACAGATTATGTTCTCAAAGTGCTCGGTCTTGATCTTTGTTCAGAGACAATTGTTGGAAATGACATGTTAAGAGGGGTTTCCGGGGGACAGAGGAAAAGGGTTACTACAGGTGAAATGGCAGTTGGACCAAGAAAAGCCATGTTTATGGATGAAATATCTACTGGACTGGATAGTTCTACTACATATCAAATTGTTAAATGTATAGGGAATTTTGTTCATCACATGGAAGCTACAGTACTAATAGCTCTGCTTCAGCCTGCACCTGAGACATTTGAATTGTTTGACGATTTAGTGCTACTAGCCGAAGGACACATGGTTTATCAAGGCCCTCGAGCTGAAGTGTTGGAGTTCTTCGAGTCATTAGGCTTCAAACTACCACCGCGAAAGGGTGTTGCAGATTTTCTTCAAGAGGTAACGTCTAAGAAGGATCAAGCTCAGTACTGGGCTGATCGTTCAAAACCATACGCATACCTTTCTGTCTCAGAAATTGCAGAAGCCTTTAAGAAGTCCAGATTTGGAAAGGCTGTGGATGACGATCTCTCTGCTCCATATGATAGATCTAAAAGTCTTCTTTCGGCTTTGCCAAAAACTAAATATGCAACCTCAAAATGGGAGCTTTGTAGAGCATGCTTTTCGCGAGAACTACTGTTGATCAGCAGGCATAGGTTTCTTTACACATTTAGGACCTGCCAGGTTGCATTTGTTGGAGCTATGACATGCACAATGTTTTCTAGATGGACAATACACCCCACAGATGAAATGAATGCCAACCTTTATCTTTCTTGCTTGTTCTTTGGGTTGGTGCACATGATGTTTAATGGGTTTACCGAGCTACCCCTTATGATATCTCGGCTCCCAGTCTTTTACAAGCAAAGGGACAATTACTTTCATCCTGCGTGGGCATGGTCTGGTGCTAGTTGGCTTCTGCGCATACCTTACTCTATGGTTGAAGCTATCGTATGGTCTTGTGTTGTATACTACATTGTTGGTTTTGCCCCTGGTGCTGGTAGATTTTTCCGATTCATGTTGTTGCTATTTACTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACAATGGCATCTCTTGCACGAGACATGGTCACTGCCAATACATTTGGATCAGCTGCACTAATTGTTATATTTTGTTTTGGTGGATTCATCATTCCCAAAGATAGCATTAAGCCATGGTGGGAATGGGCCTTTTGGATATCACCACTATCATATGCACAACGCGCAGTTTCTGTCAATGAATTTACTGCTGCAAGGTGGCTCAAGATATCTCCTTTTACTAACAGAACAATTGGGCAAAGTGTTCTCCAACAATACGACTTACCAAATGGTGATTACTGGTATTGGACTGGAGTTGGTGCTCTTATTGCTTATGCATTGGTTTTCAATTGCATAGTGACTCTGGCCTTAATGTACCTAAATCCACCAAGGAAAAACCAGACAGTGCTTCCACTTGATGACTCAGAAGGGAGTCCTGCTGCAGATGGGGGCGAAAATAAGACTATGTCTAGCCCAAAATCGAATGGAAATATCATCCCAAGAAAGGGAATGATCTTACCATTTCAGCCTTTAACAATGACCTTCCACAATGTTAACTACTATGTTGACATGCCAAAGGAAATGAAGTCACAAGGTATACCAGAACCGAGGCTGCAACTCTTGTCGAACGTGAGTGGAGTATTCTCACCAGGTGTTCTTACAGCTTTAGTTGGCTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGAAGGAGACATCAAGATATCTGGTTACCCGAAAGAGCAAAGAACTTTTGCTAGAATATCAGGATATGTTGAGCAAACTGACATACATTCTCCTCAACTGACTGTTGAGGAGTCTGTAAGGTTTTCTTCTGCTCTTCGCCTTCCCAAGGAAGTCAGCGCAGAGAAAAGACTTGAGTTTGTCGAAGAAGTAATGAAATTAGTAGAGCTTGAAACTCTAAGGCATGCTTTGGTTGGATTGCCAGGCAGTTCAGGCTTATCAACAGAGCAAAGAAAACGCTTAACAATTGCTGTTGAGCTTGTTGCCAACCCTTCAATTATCTTTATGGATGAACCCACTTCTGGACTTGATGCAAGGGCAGCAGCCATTGTGATGAGGACTGTTCGTAATACGGTTGATACAGGAAGAACGGTGGTCTGCACTATCCATCAACCAAGTATTGACATATTTGAAGCATTTGATGAGCTTCTTCTTATGAAACGAGGGGGGCAAGTTATATATGGAGGAAAGCTAGGCCTGCACTCCCAGACAATGATAAACTACTTTCAGGCGATTAATGGAATTACTCCAATTCCAAGCGGGTACAATCCAGCCACCTGGATGCTGGAGGTAACCACACCGGCTTGTGAACAAAGAATTGGTGAAGACTTTGCTAGCATATACAGAGAATCAGCGCAGTACAGGGAGGTGGAAGAGTCCATAGAGCAGTATAGTATTCCTCCACCTGACTCGGAACCATTAAAGTTTGCTTCCACGTATTCACAAAACACATTGTTTCAGTTTAAGACCTGCTTATGGAAACAAAACCTTGTGTATTGGAGAAGTCCACAATATAATGCCATGAGGTTAATCTTTACTACGATTGCTGCATTGATATTCGGTTCAGCATTTTGGGATGTGGGTAGGAAAAGGGACTCGATTCAATCATTGATGATGGTTATGGGAGCTCTTTATTCTGCTTGCTTGTTTCTTGGGGTCAATAACGCTTCTTCAGTTCAGCCAATTGTTTCGATTGAGAGGACAGTATTTTATCGAGAAAAAGCAGCTGGAATGTATTCTCCATTCGCCTATGCAGCAGCCCAGGGCCTTATAGAGATCCCATACATTGCTGTACAGACAATAGTTTATGGGGTGATCACATACTTCATGGTTAATTTTGAAAGAACAATCAAAAAATTCTTGCTCTATATTCTGTTCATGTTCCTCACATTCACCTACTTCACCCTTTATGGCATGGCGGCTGTTGGACTCACTCCTTCTCAACACCTAGCAGCTGTCATCTCTTCTGCATTTTACTCACTGTGGAATCTTCACTCTGGTTTCCTCATCCCCAAACCAAGTATGCCGAAATATTGGGTTTGGTTTTACTACATCTGTCCAGTTGCATGGACACTTAGAGGTATTATCACTTCCCAGCTTGGTGATGTAGAGACCATTCTTGTTGGACCTGCGTTTAAGGGCACTGTGAAAGAATACTTGGAAGTCACACTTGGCTTTGGCCCTGGGATGATTGGAGTTTCAGTAGCTGTGCTTCTCGGCTTCAATGTCCTTTTCTTCAGCATCTTTGCCTTCTCGATCAGATATCTCAACTTCCAGAAACGATAG

Protein Analysis

1421

Amino Acids

159.2

Weight (kDa)

8.67

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 86 - 135 8.4e-07 ABC-transporter N-terminal
ABC_tran PF00005 161 - 342 1e-15 ABC transporter
ABC2_membrane_7 PF19055 376 - 426 1.2e-06 ABC-2 type transporter
ABC2_membrane PF01061 497 - 709 1.2e-48 ABC-2 type transporter
PDR_assoc PF08370 714 - 776 3.5e-22 Plant PDR ABC transporter associated
ABC_tran PF00005 848 - 1000 4.3e-21 ABC transporter
ABC2_membrane PF01061 1146 - 1358 1e-57 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 198, 2631
Acc16I TGCGCA 1 cut(s) 1802
Acc36I ACCTGC 3 cut(s) 1568, 3455, 4114
AccB1I GGYRCC 1 cut(s) 743
AccB7I CCANNNNNTGG 1 cut(s) 545
AccI GTMKAC 2 cut(s) 1848, 2518
AccII CGCG 5 cut(s) 65, 67, 1255, 1510, 2106
AccIII TCCGGA 2 cut(s) 198, 1941
AclWI GGATC 6 cut(s) 118, 385, 809, 1308, 1999, 3748
AcoI YGGCCR 2 cut(s) 68, 625
AcsI RAATTY 3 cut(s) 1081, 2123, 3833
AcuI CTGAAG 4 cut(s) 1109, 1230, 3633, 4198
AcyI GRCGYC 4 cut(s) 8, 195, 744, 2628
AdeI CACNNNGTG 1 cut(s) 2573
AfaI GTAC 8 cut(s) 26, 341, 1110, 1313, 2297, 3242, 3338, 3771
AflIII ACRYGT 1 cut(s) 936
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 9 cut(s) 258, 508, 1563, 1870, 2569, 2899, 3254, 3738, 4159
AjuI GAANNNNNNNTTGG 8 cut(s) 978, 1010, 3279, 3311, 4118, 4131, 4150, 4163
Alw21I GWGCWC 5 cut(s) 897, 1680, 1920, 2245, 3607
Alw44I GTGCAC 2 cut(s) 1676, 1916
AlwI GGATC 6 cut(s) 118, 385, 809, 1308, 1999, 3748
AlwNI CAGNNNCTG 2 cut(s) 2114, 4184
Ama87I CYCGRG 1 cut(s) 1203
Aor13HI TCCGGA 2 cut(s) 198, 1941
ApaLI GTGCAC 2 cut(s) 1676, 1916
ApoI RAATTY 3 cut(s) 1081, 2123, 3833
ArsI GACNNNNNNTTYG 4 cut(s) 24, 56, 68, 100
AseI ATTAAT 1 cut(s) 3213
Asp700I GAANNNNTTC 1 cut(s) 3712
AspLEI GCGC 6 cut(s) 67, 746, 1803, 2108, 2819, 3334
AspS9I GGNCC 8 cut(s) 533, 998, 1199, 1557, 2070, 3742, 4103, 4157
AsuC2I CCSGG 1 cut(s) 955
AsuII TTCGAA 2 cut(s) 30, 322
AsuNHI GCTAGC 1 cut(s) 3311
AvaI CYCGRG 1 cut(s) 1203
AvaII GGWCC 4 cut(s) 533, 998, 1557, 4103
BaeGI GKGCMC 3 cut(s) 1680, 1920, 4121
BalI TGGCCA 1 cut(s) 627
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 3607
BarI GAAGNNNNNNTAC 6 cut(s) 1092, 1124, 4051, 4083, 4173, 4205
BauI CACGAG 2 cut(s) 411, 1962
BbsI GAAGAC 2 cut(s) 1433, 3309
Bbv12I GWGCWC 5 cut(s) 897, 1680, 1920, 2245, 3607
BccI CCATC 7 cut(s) 197, 410, 1602, 2360, 2617, 3093, 3586
BceAI ACGGC 5 cut(s) 55, 121, 146, 204, 604
BcgI CGANNNNNNTGC 6 cut(s) 740, 774, 1397, 1431, 1488, 1522
BciT130I CCWGG 9 cut(s) 260, 510, 1565, 1872, 2571, 2901, 3256, 3740, 4161
BciVI GTATCC 1 cut(s) 2648
BclI TGATCA 2 cut(s) 1524, 3792
BcnI CCSGG 1 cut(s) 955
BcuI ACTAGT 1 cut(s) 437
BfmI CTRYAG 3 cut(s) 978, 1104, 2361
BfoI RGCGCY 1 cut(s) 747
BfuAI ACCTGC 3 cut(s) 1568, 3455, 4114
BfuI GTATCC 1 cut(s) 2648
BglII AGATCT 1 cut(s) 1430
BmcAI AGTACT 3 cut(s) 26, 1110, 1313
Bme18I GGWCC 4 cut(s) 533, 998, 1557, 4103
BmeT110I CYCGRG 1 cut(s) 1203
BmgT120I GGNCC 8 cut(s) 533, 998, 1199, 1557, 2070, 3742, 4103, 4157
BmiI GGNNCC 4 cut(s) 535, 745, 1727, 3393
BmrI ACTGGG 2 cut(s) 1324, 1724
BmsI GCATC 7 cut(s) 165, 817, 851, 1961, 2998, 3249, 4227
BmtI GCTAGC 1 cut(s) 3315
BmuI ACTGGG 2 cut(s) 1324, 1724
BpiI GAAGAC 2 cut(s) 1433, 3309
BpmI CTGGAG 2 cut(s) 2253, 3284
Bpu14I TTCGAA 2 cut(s) 30, 322
BpuEI CTTGAG 3 cut(s) 152, 2129, 2852
BpuMI CCSGG 1 cut(s) 955
BsaAI YACGTR 1 cut(s) 3414
BsaBI GATNNNNATC 1 cut(s) 1407
BsaHI GRCGYC 4 cut(s) 8, 195, 744, 2628
BsaI GGTCTC 3 cut(s) 179, 1940, 4082
BsaWI WCCGGW 2 cut(s) 198, 1941
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 4164, 4194
Bse118I RCCGGY 1 cut(s) 3277
Bse1I ACTGG 9 cut(s) 588, 1039, 1044, 1319, 1730, 2225, 2236, 2653, 4037
Bse3DI GCAATG 2 cut(s) 690, 3762
Bse8I GATNNNNATC 1 cut(s) 1407
BseAI TCCGGA 2 cut(s) 198, 1941
BseBI CCWGG 9 cut(s) 260, 510, 1565, 1872, 2571, 2901, 3256, 3740, 4161
BseJI GATNNNNATC 1 cut(s) 1407
BseMI GCAATG 2 cut(s) 690, 3762
BseMII CTCAG 4 cut(s) 1128, 1322, 1368, 2358
BseNI ACTGG 9 cut(s) 588, 1039, 1044, 1319, 1730, 2225, 2236, 2653, 4037
BseRI GAGGAG 5 cut(s) 116, 119, 266, 2742, 2783
BseSI GKGCMC 3 cut(s) 1680, 1920, 4121
BseX3I CGGCCG 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 4071
BsgI GTGCAG 4 cut(s) 1116, 1983, 3061, 3161
Bsh1236I CGCG 5 cut(s) 65, 67, 1255, 1510, 2106
Bsh1285I CGRYCG 2 cut(s) 71, 211
BshNI GGYRCC 1 cut(s) 743
BsiEI CGRYCG 2 cut(s) 71, 211
BsiHKAI GWGCWC 5 cut(s) 897, 1680, 1920, 2245, 3607
BsiHKCI CYCGRG 1 cut(s) 1203
BsiSI CCGG 4 cut(s) 199, 954, 1942, 3278
BslFI GGGAC 4 cut(s) 61, 972, 1763, 3584
BsmBI CGTCTC 2 cut(s) 50, 457
BsmFI GGGAC 4 cut(s) 61, 972, 1763, 3584
BsmI GAATGC 3 cut(s) 648, 830, 1642
Bso31I GGTCTC 3 cut(s) 179, 1940, 4082
BsoBI CYCGRG 1 cut(s) 1203
Bsp119I TTCGAA 2 cut(s) 30, 322
Bsp1286I GDGCHC 6 cut(s) 897, 1680, 1920, 2245, 3607, 4121
Bsp13I TCCGGA 2 cut(s) 198, 1941
Bsp1407I TGTACA 1 cut(s) 3769
Bsp19I CCATGG 1 cut(s) 2057
Bsp68I TCGCGA 1 cut(s) 1510
BspCNI CTCAG 4 cut(s) 1129, 1321, 1367, 2357
BspEI TCCGGA 2 cut(s) 198, 1941
BspFNI CGCG 5 cut(s) 65, 67, 1255, 1510, 2106
BspHI TCATGA 2 cut(s) 564, 834
BspLI GGNNCC 4 cut(s) 535, 745, 1727, 3393
BspMAI CTGCAG 1 cut(s) 2365
BspMI ACCTGC 3 cut(s) 1568, 3455, 4114
BspOI GCTAGC 1 cut(s) 3315
BspPI GGATC 6 cut(s) 118, 385, 809, 1308, 1999, 3748
BspQI GCTCTTC 1 cut(s) 2799
BspT104I TTCGAA 2 cut(s) 30, 322
BspT107I GGYRCC 1 cut(s) 743
BspTNI GGTCTC 3 cut(s) 179, 1940, 4082
BsrDI GCAATG 2 cut(s) 690, 3762
BsrFI RCCGGY 1 cut(s) 3277
BsrGI TGTACA 1 cut(s) 3769
BsrI ACTGG 9 cut(s) 588, 1039, 1044, 1319, 1730, 2225, 2236, 2653, 4037
BssAI RCCGGY 1 cut(s) 3277
BssNAI GTATAC 2 cut(s) 1849, 2519
BssNI GRCGYC 4 cut(s) 8, 195, 744, 2628
BssSI CACGAG 2 cut(s) 411, 1962
BssT1I CCWWGG 3 cut(s) 2057, 2309, 2805
Bst1107I GTATAC 2 cut(s) 1849, 2519
Bst2BI CACGAG 2 cut(s) 411, 1962
Bst2UI CCWGG 9 cut(s) 260, 510, 1565, 1872, 2571, 2901, 3256, 3740, 4161
Bst6I CTCTTC 4 cut(s) 1943, 2799, 3345, 3946
BstACI GRCGYC 4 cut(s) 8, 195, 744, 2628
BstAPI GCANNNNNTGC 1 cut(s) 1958
BstAUI TGTACA 1 cut(s) 3769
BstBAI YACGTR 1 cut(s) 3414
BstBI TTCGAA 2 cut(s) 30, 322
BstC8I GCNNGC 8 cut(s) 748, 1131, 1501, 1532, 2883, 3176, 3313, 3619
BstDEI CTNAG 8 cut(s) 718, 1137, 1293, 1308, 1354, 2344, 2876, 4052
BstDSI CCRYGG 1 cut(s) 2057
BstEII GGTNACC 2 cut(s) 2684, 3268
BstENI CCTNNNNNAGG 1 cut(s) 2804
BstFNI CGCG 5 cut(s) 65, 67, 1255, 1510, 2106
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 6 cut(s) 67, 746, 1803, 2108, 2819, 3334
BstMCI CGRYCG 2 cut(s) 71, 211
BstMWI GCNNNNNNNGC 9 cut(s) 139, 1874, 1958, 2105, 2249, 2910, 3017, 3175, 3731
BstNI CCWGG 9 cut(s) 260, 510, 1565, 1872, 2571, 2901, 3256, 3740, 4161
BstNSI RCATGY 5 cut(s) 940, 1503, 1593, 2494, 2885
BstPI GGTNACC 2 cut(s) 2684, 3268
BstSFI CTRYAG 3 cut(s) 978, 1104, 2361
BstSLI GKGCMC 3 cut(s) 1680, 1920, 4121
BstUI CGCG 5 cut(s) 65, 67, 1255, 1510, 2106
BstV2I GAAGAC 2 cut(s) 1433, 3309
BstX2I RGATCY 3 cut(s) 814, 1430, 3753
BstXI CCANNNNNNTGG 4 cut(s) 1018, 2623, 3255, 4044
BstYI RGATCY 3 cut(s) 814, 1430, 3753
BstZ17I GTATAC 2 cut(s) 1849, 2519
BstZI CGGCCG 1 cut(s) 68
BsuI GTATCC 1 cut(s) 2648
BtgI CCRYGG 1 cut(s) 2057
BtgZI GCGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 1974
BtsIMutI CAGTG 4 cut(s) 1974, 2331, 3956, 4119
BtuMI TCGCGA 1 cut(s) 1510
BveI ACCTGC 3 cut(s) 1568, 3455, 4114
Cac8I GCNNGC 8 cut(s) 748, 1131, 1501, 1532, 2883, 3176, 3313, 3619
CaiI CAGNNNCTG 2 cut(s) 2114, 4184
CciI TCATGA 2 cut(s) 564, 834
CfoI GCGC 6 cut(s) 67, 746, 1803, 2108, 2819, 3334
Cfr10I RCCGGY 1 cut(s) 3277
Cfr13I GGNCC 8 cut(s) 533, 998, 1199, 1557, 2070, 3742, 4103, 4157
CsiI ACCWGGT 1 cut(s) 2569
Csp6I GTAC 8 cut(s) 25, 340, 1109, 1312, 2296, 3241, 3337, 3770
CviQI GTAC 8 cut(s) 25, 340, 1109, 1312, 2296, 3241, 3337, 3770
DdeI CTNAG 8 cut(s) 718, 1137, 1293, 1308, 1354, 2344, 2876, 4052
DinI GGCGCC 1 cut(s) 745
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 2573
EaeI YGGCCR 2 cut(s) 68, 625
EagI CGGCCG 1 cut(s) 68
Eam1104I CTCTTC 4 cut(s) 1943, 2799, 3345, 3946
EarI CTCTTC 4 cut(s) 1943, 2799, 3345, 3946
EciI GGCGGA 2 cut(s) 107, 271
Ecl136II GAGCTC 1 cut(s) 3605
EclXI CGGCCG 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 2057, 2309, 2805
Eco147I AGGCCT 2 cut(s) 634, 3174
Eco24I GRGCYC 1 cut(s) 3607
Eco31I GGTCTC 3 cut(s) 179, 1940, 4082
Eco32I GATATC 5 cut(s) 1719, 2082, 2151, 2679, 4241
Eco47I GGWCC 4 cut(s) 533, 998, 1557, 4103
Eco52I CGGCCG 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 3605
Eco57I CTGAAG 4 cut(s) 1109, 1230, 3633, 4198
Eco88I CYCGRG 1 cut(s) 1203
Eco91I GGTNACC 2 cut(s) 2684, 3268
EcoICRI GAGCTC 1 cut(s) 3605
EcoNI CCTNNNNNAGG 1 cut(s) 2804
EcoO109I RGGNCCY 4 cut(s) 533, 1199, 1557, 3742
EcoO65I GGTNACC 2 cut(s) 2684, 3268
EcoRII CCWGG 9 cut(s) 258, 508, 1563, 1870, 2569, 2899, 3254, 3738, 4159
EcoRV GATATC 5 cut(s) 1719, 2082, 2151, 2679, 4241
EcoT14I CCWWGG 3 cut(s) 2057, 2309, 2805
EcoT22I ATGCAT 2 cut(s) 832, 2260
EcoT38I GRGCYC 1 cut(s) 3607
EgeI GGCGCC 1 cut(s) 745
EheI GGCGCC 1 cut(s) 745
ErhI CCWWGG 3 cut(s) 2057, 2309, 2805
Esp3I CGTCTC 2 cut(s) 50, 457
FaqI GGGAC 4 cut(s) 61, 972, 1763, 3584
FauI CCCGC 1 cut(s) 3230
FauNDI CATATG 2 cut(s) 1423, 2095
FbaI TGATCA 2 cut(s) 1524, 3792
FblI GTMKAC 2 cut(s) 1848, 2518
FriOI GRGCYC 1 cut(s) 3607
FspI TGCGCA 1 cut(s) 1802
GlaI GCGC 6 cut(s) 66, 745, 1802, 2107, 2818, 3333
GsaI CCCAGC 1 cut(s) 4075
GsuI CTGGAG 2 cut(s) 2253, 3284
HaeII RGCGCY 1 cut(s) 747
HapII CCGG 4 cut(s) 199, 954, 1942, 3278
HhaI GCGC 6 cut(s) 67, 746, 1803, 2108, 2819, 3334
Hin1I GRCGYC 4 cut(s) 8, 195, 744, 2628
Hin6I GCGC 6 cut(s) 65, 744, 1801, 2106, 2817, 3332
HinP1I GCGC 6 cut(s) 65, 744, 1801, 2106, 2817, 3332
HincII GTYRAC 2 cut(s) 2476, 2488
HindII GTYRAC 2 cut(s) 2476, 2488
HpaI GTTAAC 1 cut(s) 2476
HpaII CCGG 4 cut(s) 199, 954, 1942, 3278
Hpy99I CGWCG 6 cut(s) 13, 76, 132, 142, 197, 233
HpyCH4IV ACGT 7 cut(s) 59, 195, 366, 1289, 2550, 2628, 3413
HpyF10VI GCNNNNNNNGC 9 cut(s) 139, 1874, 1958, 2105, 2249, 2910, 3017, 3175, 3731
HpyF3I CTNAG 8 cut(s) 718, 1137, 1293, 1308, 1354, 2344, 2876, 4052
HpySE526I ACGT 7 cut(s) 59, 195, 366, 1289, 2550, 2628, 3413
Hsp92I GRCGYC 4 cut(s) 8, 195, 744, 2628
HspAI GCGC 6 cut(s) 65, 744, 1801, 2106, 2817, 3332
KasI GGCGCC 1 cut(s) 743
Kpn2I TCCGGA 2 cut(s) 198, 1941
Ksp22I TGATCA 2 cut(s) 1524, 3792
KspAI GTTAAC 1 cut(s) 2476
LguI GCTCTTC 1 cut(s) 2799
LmnI GCTCC 8 cut(s) 18, 106, 1423, 1486, 1580, 1731, 2603, 3602
LweI GCATC 7 cut(s) 165, 817, 851, 1961, 2998, 3249, 4227
MabI ACCWGGT 1 cut(s) 2569
MaeII ACGT 7 cut(s) 59, 195, 366, 1289, 2550, 2628, 3413
MaeIII GTNAC 8 cut(s) 973, 1285, 1972, 2278, 2508, 2684, 3268, 4141
MfeI CAATTG 5 cut(s) 921, 2172, 2269, 2943, 3660
MflI RGATCY 3 cut(s) 814, 1430, 3753
MhlI GDGCHC 6 cut(s) 897, 1680, 1920, 2245, 3607, 4121
MlsI TGGCCA 1 cut(s) 627
MluNI TGGCCA 1 cut(s) 627
Mly113I GGCGCC 1 cut(s) 744
Mox20I TGGCCA 1 cut(s) 627
Mph1103I ATGCAT 2 cut(s) 832, 2260
MroI TCCGGA 2 cut(s) 198, 1941
MroXI GAANNNNTTC 1 cut(s) 3712
MscI TGGCCA 1 cut(s) 627
MslI CAYNNNNRTG 4 cut(s) 1016, 2621, 3029, 3257
Msp20I TGGCCA 1 cut(s) 627
MspA1I CMGCKG 4 cut(s) 495, 1997, 3704, 3932
MspI CCGG 4 cut(s) 199, 954, 1942, 3278
MunI CAATTG 5 cut(s) 921, 2172, 2269, 2943, 3660
Mva1269I GAATGC 3 cut(s) 648, 830, 1642
MvaI CCWGG 9 cut(s) 260, 510, 1565, 1872, 2571, 2901, 3256, 3740, 4161
MvnI CGCG 5 cut(s) 65, 67, 1255, 1510, 2106
MwoI GCNNNNNNNGC 9 cut(s) 139, 1874, 1958, 2105, 2249, 2910, 3017, 3175, 3731
NarI GGCGCC 1 cut(s) 744
NciI CCSGG 1 cut(s) 955
NcoI CCATGG 1 cut(s) 2057
NdeI CATATG 2 cut(s) 1423, 2095
NheI GCTAGC 1 cut(s) 3311
NlaIV GGNNCC 4 cut(s) 535, 745, 1727, 3393
NmeAIII GCCGAG 3 cut(s) 106, 1702, 4173
NmuCI GTSAC 4 cut(s) 1972, 2278, 2508, 4141
NruI TCGCGA 1 cut(s) 1510
NsbI TGCGCA 1 cut(s) 1802
NsiI ATGCAT 2 cut(s) 832, 2260
NspI RCATGY 5 cut(s) 940, 1503, 1593, 2494, 2885
NspV TTCGAA 2 cut(s) 30, 322
PaeI GCATGC 2 cut(s) 1503, 2885
PaeR7I CTCGAG 1 cut(s) 1203
PagI TCATGA 2 cut(s) 564, 834
PasI CCCWGGG 2 cut(s) 3739, 4160
PceI AGGCCT 2 cut(s) 634, 3174
PciI ACATGT 1 cut(s) 936
PciSI GCTCTTC 1 cut(s) 2799
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 217, 252
PctI GAATGC 3 cut(s) 648, 830, 1642
PdmI GAANNNNTTC 1 cut(s) 3712
PfeI GAWTC 6 cut(s) 346, 1893, 2028, 3326, 3577, 3964
PflFI GACNNNGTC 2 cut(s) 1970, 2386
PflMI CCANNNNNTGG 1 cut(s) 545
Ple19I CGATCG 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 747
Ppu21I YACGTR 1 cut(s) 3414
PpuMI RGGWCCY 2 cut(s) 533, 1557
PscI ACATGT 1 cut(s) 936
PshBI ATTAAT 1 cut(s) 3213
Psp124BI GAGCTC 1 cut(s) 3607
Psp5II RGGWCCY 2 cut(s) 533, 1557
Psp6I CCWGG 9 cut(s) 258, 508, 1563, 1870, 2569, 2899, 3254, 3738, 4159
PspEI GGTNACC 2 cut(s) 2684, 3268
PspFI CCCAGC 1 cut(s) 4071
PspGI CCWGG 9 cut(s) 258, 508, 1563, 1870, 2569, 2899, 3254, 3738, 4159
PspN4I GGNNCC 4 cut(s) 535, 745, 1727, 3393
PspPI GGNCC 8 cut(s) 533, 998, 1199, 1557, 2070, 3742, 4103, 4157
PspPPI RGGWCCY 2 cut(s) 533, 1557
PspXI VCTCGAGB 1 cut(s) 1203
PsrI GAACNNNNNNTAC 2 cut(s) 351, 383
PstI CTGCAG 1 cut(s) 2365
PstNI CAGNNNCTG 2 cut(s) 2114, 4184
PsuI RGATCY 3 cut(s) 814, 1430, 3753
PsyI GACNNNGTC 2 cut(s) 1970, 2386
PvuI CGATCG 1 cut(s) 211
PvuII CAGCTG 3 cut(s) 1997, 3704, 3932
RruI TCGCGA 1 cut(s) 1510
RsaI GTAC 8 cut(s) 26, 341, 1110, 1313, 2297, 3242, 3338, 3771
RsaNI GTAC 8 cut(s) 25, 340, 1109, 1312, 2296, 3241, 3337, 3770
RseI CAYNNNNRTG 4 cut(s) 1016, 2621, 3029, 3257
SacI GAGCTC 1 cut(s) 3607
SapI GCTCTTC 1 cut(s) 2799
Sau96I GGNCC 8 cut(s) 533, 998, 1199, 1557, 2070, 3742, 4103, 4157
ScaI AGTACT 3 cut(s) 26, 1110, 1313
SduI GDGCHC 6 cut(s) 897, 1680, 1920, 2245, 3607, 4121
SexAI ACCWGGT 1 cut(s) 2569
SfaNI GCATC 7 cut(s) 165, 817, 851, 1961, 2998, 3249, 4227
SfcI CTRYAG 3 cut(s) 978, 1104, 2361
SfoI GGCGCC 1 cut(s) 745
Sfr274I CTCGAG 1 cut(s) 1203
SfuI TTCGAA 2 cut(s) 30, 322
SinI GGWCC 4 cut(s) 533, 998, 1557, 4103
SlaI CTCGAG 1 cut(s) 1203
SmiMI CAYNNNNRTG 4 cut(s) 1016, 2621, 3029, 3257
SmlI CTYRAG 4 cut(s) 167, 1203, 2144, 2831
SmoI CTYRAG 4 cut(s) 167, 1203, 2144, 2831
SpeI ACTAGT 1 cut(s) 437
SphI GCATGC 2 cut(s) 1503, 2885
SseBI AGGCCT 2 cut(s) 634, 3174
SspDI GGCGCC 1 cut(s) 743
SspI AATATT 1 cut(s) 4010
SstI GAGCTC 1 cut(s) 3607
StuI AGGCCT 2 cut(s) 634, 3174
StyI CCWWGG 3 cut(s) 2057, 2309, 2805
TaiI ACGT 7 cut(s) 62, 198, 369, 1292, 2553, 2631, 3416
TaqII GACCGA 1 cut(s) 887
TatI WGTACW 5 cut(s) 24, 1108, 1311, 3336, 3769
TauI GCSGC 5 cut(s) 8, 70, 122, 498, 3899
TfiI GAWTC 6 cut(s) 346, 1893, 2028, 3326, 3577, 3964
TscAI CASTG 4 cut(s) 1981, 2331, 3963, 4126
TseFI GTSAC 4 cut(s) 1972, 2278, 2508, 4141
Tsp45I GTSAC 4 cut(s) 1972, 2278, 2508, 4141
TspRI CASTG 4 cut(s) 1981, 2331, 3963, 4126
Tth111I GACNNNGTC 2 cut(s) 1970, 2386
Van91I CCANNNNNTGG 1 cut(s) 545
VneI GTGCAC 2 cut(s) 1676, 1916
VpaK11BI GGWCC 4 cut(s) 533, 998, 1557, 4103
VspI ATTAAT 1 cut(s) 3213
XagI CCTNNNNNAGG 1 cut(s) 2804
XapI RAATTY 3 cut(s) 1081, 2123, 3833
XbaI TCTAGA 1 cut(s) 1604
XceI RCATGY 5 cut(s) 940, 1503, 1593, 2494, 2885
XcmI CCANNNNNNNNNTGG 2 cut(s) 2064, 3259
XhoI CTCGAG 1 cut(s) 1203
XmiI GTMKAC 2 cut(s) 1848, 2518
XmnI GAANNNNTTC 1 cut(s) 3712
ZraI GACGTC 2 cut(s) 196, 2629
ZrmI AGTACT 3 cut(s) 26, 1110, 1313
Zsp2I ATGCAT 2 cut(s) 832, 2260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.