Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Reverse (-)

62899952 .. 62904180

Gene Structure 4229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2583 bp

ATGATGTTCAATGGGCATTCCGAGCTACCTCTTATGATATCTCAGCTCCCAGTCTTTTACAAGCAAAGGGATAATTACTTTCATCCTGCGTGGGCATGGTCTGGTGTTAATTTACTTCTGCGCATACCTTACTCTATTATTGAAGCTGTCGTATGGTCTTGTGTCGTATACTACACAGTTGGTTTTGCCCCTGGTGCTGGGAAATTTTTCCGTTTCATGTTTTTGCTATTTTCTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACATTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATGCATTTGGATCAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCATGGTGGCAATGGGCCTTTTGGCTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGCTGTAAGGTGGATCAAGATAGCTCCTTTAACAAACAGAACAATTGGGCAAAATGTCCTCCAAGAACACAACTTACCAAATGGTGATTATTGGTATTGGATTGGAGTTGGTAGTCTGTTAGCTTATGCATTGCTTTTCAATTGCACAGTGACTCTGGCCTTGACGTACCTAAATCCACTAAGGAAGTACCAGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACCGTGTCTAGCCCAAAATCAGCTGGAGGTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAATCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAAGGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGAAGGAGATATTAAGATATCTGATTACCCGAGAGAGCAACGTACTTTTGCTAGAGTAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAAGTTACAGTTGAGGAGAGTCTATGGTTTTCTTCTGCTCTTCGCCTTCCAAAGGAAGTCAGCACAGAGACAAGACTCGTGTTTGTCGAAGAAGTAATGGAACTAGTAGAGCTTGATACTCTAAGGCATGTTTTGGTTGGTGTGCCAGGCAGTTCAGGCTTATCAACAGAGCAAAGAAAACGCTTAACAATCGCTGTTGAGCTTGTTGCGAACCCTTCAATTATCTTTATGGATGAACCCACATCTGGACTGGACGCAAGGGCAGCAGCCATTGTGATGAGGACTGTTCGTAATACTGTTGATACAGGAAGAACGGTGGTCTGCACTATACACCAACCAAGTATCGACATTTTTGAGTCATTTGACGAGCTTCTTCTTATGAAACGAGGGGGGCAAGTTATATATGGAGGAAAGCTAGGCCAGCACTCCCAGACAATGATAAACTACTTTCAGGAGATTAATGGAATCACTCCGATTCCAAGCGGGTACAATCCAGCAACCTGGATGCTGGAGGTAACCACACCGTCTTGTAAACAGAGAATCGGAGAAGACTTCGCTACCATATACAGGAATTCAGAGCAGTACAGGGAGGTGGAAGAGTCCATCAAGCAGTTGAGTACTCCTCCAACCGACTCAAAACCATTAAAGTTTGCTTCCACATATTCACAGAACACATTGGCTCAACTTAGGAACTGCTTATGGAAACAGAATCTCGTGTATTGGAGAAGTCCACAATATAATGCGATGAGGTTAATCTTTACTATCCTTGCTGCATTGATACTGGGCTCGGCATTTTGGGATGTCGGTACAAAAAGGGACTCGCTTCAATCATTGATGATGGTTATGGGAGCTCTTTATTCTGCTTGTTTGTTTCTTGGGGTCAATAACGCTTCTTCAGTTCAGCCGATTGTTTCGATTGAGAGGACGGTATTTTATCGAGAGAAAGCAGCTGGAATGTATTCTTCTTTGGCTTATGCAGCGGCCCAGGGCCTTAAAGAGATCCCATACATTGCTGTGCAGACAATAGTATACGGGGTGATCACATACTTCATGATAAATTTTGAAAGGACAATCACAAAATTCTTGCTCTATATTCTGATCATGTTCCTCACTTTCGTATATTTCACTCTTTTCGGCATGGCGGCTGTTTCTGTCACAGCTTCTCAACCCCTGGCAGCTGCCATCTCTGCTGCATTTTACTCATTGTGGAATCTATTCTCTGGTTTCCTCGTCCCCAAACCAAACATCCCGGTATGGTGGCTTTGGTTTTACTACATCTCCCCAGTTGCATGGACACTCAGAGGTATTATCACTTCCCAACTTGGTGATGTGGAGACCATTCTTGTCGGACCTGCGTTTAAGGGCACCTTGAAAGAATACTTGGAAGTCAGCCTTGGCTATGGCCCTGGGATGATTGGAGTTTCAGTAGCTGTGCTTCTGGGCTTCAACGTCCTTTTGTTCAGTATCTTTGCCTTCTCCATCAAATTTCTCAACTTCCAGAGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

860

Amino Acids

95.82

Weight (kDa)

8.97

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 149	6.4e-38	ABC-2 type transporter
PDR_assoc	PF08370	154 - 216	1.6e-22	Plant PDR ABC transporter associated
ABC_tran	PF00005	289 - 440	1.3e-20	ABC transporter
ABC2_membrane	PF01061	586 - 798	2e-55	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	951
Acc16I	TGCGCA	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	2434
AccB1I	GGYRCC	1 cut(s)	2438
AccBSI	CCGCTC	1 cut(s)	876
AccI	GTMKAC	3 cut(s)	168, 838, 2103
AccII	CGCG	1 cut(s)	426
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	4 cut(s)	876, 1557, 2054, 2216
AclWI	GGATC	3 cut(s)	319, 470, 2068
AcsI	RAATTY	6 cut(s)	203, 443, 1645, 2131, 2153, 2558
AcuI	CTGAAG	1 cut(s)	1953
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	7 cut(s)	617, 638, 1024, 1562, 1658, 1693, 1882
AfiI	CCNNNNNNNGG	7 cut(s)	197, 268, 745, 746, 1126, 1319, 1641
AgsI	TTSAA	8 cut(s)	10, 143, 589, 1293, 1901, 2138, 2446, 2521
AhlI	ACTAGT	1 cut(s)	1177
AjnI	CCWGG	7 cut(s)	190, 889, 1219, 1574, 2058, 2244, 2479
AjuI	GAANNNNNNNTTGG	4 cut(s)	2438, 2451, 2470, 2483
Alw21I	GWGCWC	2 cut(s)	240, 1927
Alw26I	GTCTC	3 cut(s)	260, 1136, 2402
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	319, 470, 2068
AlwNI	CAGNNNCTG	1 cut(s)	2504
Ama87I	CYCGRG	1 cut(s)	1009
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	6 cut(s)	390, 606, 1492, 2055, 2062, 2476
ApaLI	GTGCAC	1 cut(s)	236
ApoI	RAATTY	6 cut(s)	203, 443, 1645, 2131, 2153, 2558
AseI	ATTAAT	1 cut(s)	1533
Asp700I	GAANNNNTTC	3 cut(s)	206, 2032, 2288
AspLEI	GCGC	2 cut(s)	123, 428
AspS9I	GGNCC	5 cut(s)	390, 2056, 2062, 2423, 2477
AsuC2I	CCSGG	1 cut(s)	2324
AsuHPI	GGTGA	6 cut(s)	396, 545, 879, 883, 2122, 2411
AvaI	CYCGRG	1 cut(s)	1009
AvaII	GGWCC	1 cut(s)	2423
BaeGI	GKGCMC	2 cut(s)	240, 2441
BanI	GGYRCC	1 cut(s)	2438
BanII	GRGCYC	2 cut(s)	1862, 1927
BarI	GAAGNNNNNNTAC	4 cut(s)	2371, 2403, 2493, 2525
BauI	CACGAG	2 cut(s)	1151, 1787
BbsI	GAAGAC	1 cut(s)	1629
Bbv12I	GWGCWC	2 cut(s)	240, 1927
BccI	CCATC	6 cut(s)	680, 937, 1685, 1906, 2264, 2561
BciT130I	CCWGG	7 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2481
BciVI	GTATCC	1 cut(s)	968
BclI	TGATCA	2 cut(s)	2112, 2172
BcnI	CCSGG	1 cut(s)	2324
BcoDI	GTCTC	3 cut(s)	260, 1136, 2402
BcuI	ACTAGT	1 cut(s)	1177
BfaI	CTAG	5 cut(s)	711, 918, 1032, 1178, 1490
BfmI	CTRYAG	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	2434
BfuI	GTATCC	1 cut(s)	968
BglI	GCCNNNNNGGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	1693
Bme1390I	CCNGG	8 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2324, 2481
Bme18I	GGWCC	1 cut(s)	2423
BmeT110I	CYCGRG	1 cut(s)	1009
BmgT120I	GGNCC	5 cut(s)	390, 2056, 2062, 2423, 2477
BmiI	GGNNCC	1 cut(s)	2440
BmrFI	CCNGG	8 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2324, 2481
BmrI	ACTGGG	4 cut(s)	44, 734, 1865, 2351
BmsI	GCATC	2 cut(s)	281, 1569
BmuI	ACTGGG	4 cut(s)	44, 734, 1865, 2351
BpiI	GAAGAC	1 cut(s)	1629
BplI	GAGNNNNNCTC	2 cut(s)	1681, 1713
BpmI	CTGGAG	2 cut(s)	747, 1604
BpuEI	CTTGAG	1 cut(s)	1059
BpuMI	CCSGG	1 cut(s)	2324
BsaHI	GRCGYC	1 cut(s)	948
BsaI	GGTCTC	2 cut(s)	260, 2402
BsaJI	CCNNGG	8 cut(s)	190, 377, 2058, 2059, 2244, 2467, 2479, 2480
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	6 cut(s)	812, 842, 2336, 2366, 2484, 2514
Bsc4I	CCNNNNNNNGG	7 cut(s)	197, 268, 745, 746, 1126, 1319, 1641
Bse1I	ACTGG	6 cut(s)	50, 740, 973, 1329, 1860, 2357
Bse3DI	GCAATG	4 cut(s)	294, 392, 578, 2082
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	7 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2481
BseDI	CCNNGG	8 cut(s)	190, 377, 2058, 2059, 2244, 2467, 2479, 2480
BseGI	GGATG	6 cut(s)	82, 1312, 1584, 1879, 2319, 2490
BseLI	CCNNNNNNNGG	7 cut(s)	197, 268, 745, 746, 1126, 1319, 1641
BseMI	GCAATG	4 cut(s)	294, 392, 578, 2082
BseMII	CTCAG	2 cut(s)	56, 2386
BseNI	ACTGG	6 cut(s)	50, 740, 973, 1329, 1860, 2357
BseRI	GAGGAG	3 cut(s)	1062, 1103, 1686
BseSI	GKGCMC	2 cut(s)	240, 2441
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	2 cut(s)	1381, 2111
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	392, 608, 1494, 2057, 2064, 2478
BshNI	GGYRCC	1 cut(s)	2438
BsiHKAI	GWGCWC	2 cut(s)	240, 1927
BsiHKCI	CYCGRG	1 cut(s)	1009
BsiSI	CCGG	2 cut(s)	262, 2324
BslFI	GGGAC	2 cut(s)	1904, 2291
BslI	CCNNNNNNNGG	7 cut(s)	197, 268, 745, 746, 1126, 1319, 1641
BsmAI	GTCTC	3 cut(s)	260, 1136, 2402
BsmFI	GGGAC	2 cut(s)	1904, 2291
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	6 cut(s)	392, 608, 1494, 2057, 2064, 2478
Bso31I	GGTCTC	2 cut(s)	260, 2402
BsoBI	CYCGRG	1 cut(s)	1009
Bsp1286I	GDGCHC	4 cut(s)	240, 1862, 1927, 2441
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	4 cut(s)	876, 1557, 2054, 2216
BspANI	GGCC	6 cut(s)	392, 608, 1494, 2057, 2064, 2478
BspCNI	CTCAG	2 cut(s)	55, 2385
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	2124
BspLI	GGNNCC	1 cut(s)	2440
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	2434
BspPI	GGATC	3 cut(s)	319, 470, 2068
BspQI	GCTCTTC	1 cut(s)	1119
BspT107I	GGYRCC	1 cut(s)	2438
BspTNI	GGTCTC	2 cut(s)	260, 2402
BsrBI	CCGCTC	1 cut(s)	876
BsrDI	GCAATG	4 cut(s)	294, 392, 578, 2082
BsrI	ACTGG	6 cut(s)	50, 740, 973, 1329, 1860, 2357
BssECI	CCNNGG	8 cut(s)	190, 377, 2058, 2059, 2244, 2467, 2479, 2480
BssMI	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
BssNAI	GTATAC	3 cut(s)	169, 839, 2104
BssNI	GRCGYC	1 cut(s)	948
BssSI	CACGAG	2 cut(s)	1151, 1787
BssT1I	CCWWGG	2 cut(s)	377, 2467
Bst1107I	GTATAC	3 cut(s)	169, 839, 2104
Bst2BI	CACGAG	2 cut(s)	1151, 1787
Bst2UI	CCWGG	7 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2481
Bst6I	CTCTTC	3 cut(s)	263, 1119, 1665
BstACI	GRCGYC	1 cut(s)	948
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	1496
BstDEI	CTNAG	5 cut(s)	42, 629, 1196, 1760, 2372
BstDSI	CCRYGG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	1588
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstF5I	GGATG	6 cut(s)	82, 1312, 1584, 1879, 2319, 2490
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	123, 428
BstKTI	GATC	6 cut(s)	314, 465, 756, 2076, 2115, 2175
BstMAI	GTCTC	3 cut(s)	260, 1136, 2402
BstMBI	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
BstNI	CCWGG	7 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2481
BstNSI	RCATGY	1 cut(s)	1205
BstPI	GGTNACC	1 cut(s)	1588
BstSCI	CCNGG	8 cut(s)	190, 889, 1219, 1574, 2058, 2244, 2322, 2479
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	2 cut(s)	240, 2441
BstUI	CGCG	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	1629
BstX2I	RGATCY	1 cut(s)	2073
BstXI	CCANNNNNNTGG	3 cut(s)	943, 1575, 2364
BstYI	RGATCY	1 cut(s)	2073
BstZ17I	GTATAC	3 cut(s)	169, 839, 2104
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	6 cut(s)	392, 608, 1494, 2057, 2064, 2478
BtgI	CCRYGG	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	1832
BtsCI	GGATG	6 cut(s)	82, 1312, 1584, 1879, 2319, 2490
BtsIMutI	CAGTG	2 cut(s)	603, 651
BveI	ACCTGC	1 cut(s)	2434
Cac8I	GCNNGC	1 cut(s)	1496
CaiI	CAGNNNCTG	1 cut(s)	2504
CciI	TCATGA	1 cut(s)	2124
CfoI	GCGC	2 cut(s)	123, 428
Cfr13I	GGNCC	5 cut(s)	390, 2056, 2062, 2423, 2477
CseI	GACGC	1 cut(s)	1337
CsiI	ACCWGGT	1 cut(s)	889
Csp6I	GTAC	7 cut(s)	616, 637, 1023, 1561, 1657, 1692, 1881
CviAII	CATG	8 cut(s)	96, 217, 378, 1202, 2125, 2176, 2212, 2364
CviQI	GTAC	7 cut(s)	616, 637, 1023, 1561, 1657, 1692, 1881
DdeI	CTNAG	5 cut(s)	42, 629, 1196, 1760, 2372
DpnI	GATC	6 cut(s)	313, 464, 755, 2075, 2114, 2174
DpnII	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
Eam1104I	CTCTTC	3 cut(s)	263, 1119, 1665
EarI	CTCTTC	3 cut(s)	263, 1119, 1665
Ecl136II	GAGCTC	1 cut(s)	1925
Eco130I	CCWWGG	2 cut(s)	377, 2467
Eco24I	GRGCYC	2 cut(s)	1862, 1927
Eco31I	GGTCTC	2 cut(s)	260, 2402
Eco32I	GATATC	2 cut(s)	39, 999
Eco47I	GGWCC	1 cut(s)	2423
Eco53kI	GAGCTC	1 cut(s)	1925
Eco57I	CTGAAG	1 cut(s)	1953
Eco88I	CYCGRG	1 cut(s)	1009
Eco91I	GGTNACC	1 cut(s)	1588
EcoICRI	GAGCTC	1 cut(s)	1925
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoO109I	RGGNCCY	1 cut(s)	2062
EcoO65I	GGTNACC	1 cut(s)	1588
EcoRI	GAATTC	1 cut(s)	1645
EcoRII	CCWGG	7 cut(s)	190, 889, 1219, 1574, 2058, 2244, 2479
EcoRV	GATATC	2 cut(s)	39, 999
EcoT14I	CCWWGG	2 cut(s)	377, 2467
EcoT22I	ATGCAT	2 cut(s)	307, 580
EcoT38I	GRGCYC	2 cut(s)	1862, 1927
ErhI	CCWWGG	2 cut(s)	377, 2467
FaeI	CATG	8 cut(s)	99, 220, 381, 1205, 2128, 2179, 2215, 2367
FalI	AAGNNNNNCTT	4 cut(s)	2426, 2458, 2451, 2483
FaqI	GGGAC	2 cut(s)	1904, 2291
FatI	CATG	8 cut(s)	95, 216, 377, 1201, 2124, 2175, 2211, 2363
FauI	CCCGC	1 cut(s)	1550
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	2 cut(s)	2112, 2172
FblI	GTMKAC	3 cut(s)	168, 838, 2103
FokI	GGATG	6 cut(s)	69, 1319, 1591, 1886, 2306, 2497
FriOI	GRGCYC	2 cut(s)	1862, 1927
FspBI	CTAG	5 cut(s)	711, 918, 1032, 1178, 1490
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	2 cut(s)	122, 427
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	747, 1604
HaeIII	GGCC	6 cut(s)	392, 608, 1494, 2057, 2064, 2478
HapII	CCGG	2 cut(s)	262, 2324
HgaI	GACGC	1 cut(s)	1337
HhaI	GCGC	2 cut(s)	123, 428
Hin1I	GRCGYC	1 cut(s)	948
Hin1II	CATG	8 cut(s)	99, 220, 381, 1205, 2128, 2179, 2215, 2367
Hin6I	GCGC	2 cut(s)	121, 426
HinP1I	GCGC	2 cut(s)	121, 426
HpaII	CCGG	2 cut(s)	262, 2324
HphI	GGTGA	6 cut(s)	396, 545, 879, 883, 2122, 2411
Hpy166II	GTNNAC	7 cut(s)	169, 238, 808, 839, 1607, 1805, 2104
Hpy188I	TCNGA	8 cut(s)	22, 1003, 1548, 1619, 1651, 2172, 2375, 2423
Hpy188III	TCNNGA	7 cut(s)	262, 466, 1320, 1526, 2012, 2125, 2572
Hpy8I	GTNNAC	7 cut(s)	169, 238, 808, 839, 1607, 1805, 2104
HpyAV	CCTTC	6 cut(s)	662, 862, 977, 1130, 1299, 2557
HpyCH4IV	ACGT	4 cut(s)	614, 948, 1021, 2523
HpyF3I	CTNAG	5 cut(s)	42, 629, 1196, 1760, 2372
HpySE526I	ACGT	4 cut(s)	614, 948, 1021, 2523
Hsp92I	GRCGYC	1 cut(s)	948
Hsp92II	CATG	8 cut(s)	99, 220, 381, 1205, 2128, 2179, 2215, 2367
HspAI	GCGC	2 cut(s)	121, 426
Kpn2I	TCCGGA	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	2112, 2172
Kzo9I	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
LguI	GCTCTTC	1 cut(s)	1119
LmnI	GCTCC	4 cut(s)	51, 478, 923, 1922
LweI	GCATC	2 cut(s)	281, 1569
MabI	ACCWGGT	1 cut(s)	889
MaeI	CTAG	5 cut(s)	711, 918, 1032, 1178, 1490
MaeII	ACGT	4 cut(s)	614, 948, 1021, 2523
MaeIII	GTNAC	7 cut(s)	598, 731, 793, 828, 1078, 1588, 2227
MalI	GATC	6 cut(s)	313, 464, 755, 2075, 2114, 2174
MbiI	CCGCTC	1 cut(s)	876
MboI	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
MfeI	CAATTG	2 cut(s)	492, 589
MflI	RGATCY	1 cut(s)	2073
MhlI	GDGCHC	4 cut(s)	240, 1862, 1927, 2441
MlyI	GAGTC	8 cut(s)	595, 682, 1102, 1143, 1439, 1682, 1700, 1886
MmeI	TCCRAC	2 cut(s)	1724, 2401
Mph1103I	ATGCAT	2 cut(s)	307, 580
MroI	TCCGGA	1 cut(s)	261
MroXI	GAANNNNTTC	3 cut(s)	206, 2032, 2288
MslI	CAYNNNNRTG	3 cut(s)	941, 1349, 2087
MspA1I	CMGCKG	5 cut(s)	317, 725, 2024, 2054, 2252
MspI	CCGG	2 cut(s)	262, 2324
MspR9I	CCNGG	8 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2324, 2481
MunI	CAATTG	2 cut(s)	492, 589
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	7 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2481
MvnI	CGCG	1 cut(s)	426
NciI	CCSGG	1 cut(s)	2324
NcoI	CCATGG	1 cut(s)	377
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
NlaIII	CATG	8 cut(s)	99, 220, 381, 1205, 2128, 2179, 2215, 2367
NlaIV	GGNNCC	1 cut(s)	2440
NmeAIII	GCCGAG	1 cut(s)	1841
NmuCI	GTSAC	3 cut(s)	598, 828, 2227
NsbI	TGCGCA	1 cut(s)	122
NsiI	ATGCAT	2 cut(s)	307, 580
NspI	RCATGY	1 cut(s)	1205
PagI	TCATGA	1 cut(s)	2124
PasI	CCCWGGG	2 cut(s)	2059, 2480
PciSI	GCTCTTC	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	1 cut(s)	1158
PctI	GAATGC	1 cut(s)	16
PdmI	GAANNNNTTC	3 cut(s)	206, 2032, 2288
PfeI	GAWTC	7 cut(s)	348, 845, 1539, 1549, 1614, 1783, 2284
PflFI	GACNNNGTC	1 cut(s)	706
PleI	GAGTC	8 cut(s)	595, 681, 1101, 1143, 1438, 1681, 1700, 1886
PpsI	GAGTC	8 cut(s)	595, 681, 1101, 1143, 1438, 1681, 1700, 1886
PshBI	ATTAAT	1 cut(s)	1533
Psp124BI	GAGCTC	1 cut(s)	1927
Psp6I	CCWGG	7 cut(s)	190, 889, 1219, 1574, 2058, 2244, 2479
PspEI	GGTNACC	1 cut(s)	1588
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	7 cut(s)	190, 889, 1219, 1574, 2058, 2244, 2479
PspN4I	GGNNCC	1 cut(s)	2440
PspPI	GGNCC	5 cut(s)	390, 2056, 2062, 2423, 2477
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	2504
PsuI	RGATCY	1 cut(s)	2073
PsyI	GACNNNGTC	1 cut(s)	706
PvuII	CAGCTG	4 cut(s)	317, 725, 2024, 2252
RsaI	GTAC	7 cut(s)	617, 638, 1024, 1562, 1658, 1693, 1882
RsaNI	GTAC	7 cut(s)	616, 637, 1023, 1561, 1657, 1692, 1881
RseI	CAYNNNNRTG	3 cut(s)	941, 1349, 2087
SacI	GAGCTC	1 cut(s)	1927
SapI	GCTCTTC	1 cut(s)	1119
Sau3AI	GATC	6 cut(s)	311, 462, 753, 2073, 2112, 2172
Sau96I	GGNCC	5 cut(s)	390, 2056, 2062, 2423, 2477
ScaI	AGTACT	1 cut(s)	1693
SchI	GAGTC	8 cut(s)	595, 682, 1102, 1143, 1439, 1682, 1700, 1886
ScrFI	CCNGG	8 cut(s)	192, 891, 1221, 1576, 2060, 2246, 2324, 2481
SduI	GDGCHC	4 cut(s)	240, 1862, 1927, 2441
SexAI	ACCWGGT	1 cut(s)	889
SfaNI	GCATC	2 cut(s)	281, 1569
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	2423
SmiMI	CAYNNNNRTG	3 cut(s)	941, 1349, 2087
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
SpeI	ACTAGT	1 cut(s)	1177
SsiI	CCGC	4 cut(s)	876, 1557, 2054, 2216
SspMI	CTAG	5 cut(s)	711, 918, 1032, 1178, 1490
SstI	GAGCTC	1 cut(s)	1927
StyD4I	CCNGG	8 cut(s)	190, 889, 1219, 1574, 2058, 2244, 2322, 2479
StyI	CCWWGG	2 cut(s)	377, 2467
TaiI	ACGT	4 cut(s)	617, 951, 1024, 2526
TaqI	TCGA	6 cut(s)	848, 866, 1161, 1419, 1988, 2011
TatI	WGTACW	2 cut(s)	1656, 1691
TauI	GCSGC	2 cut(s)	2057, 2219
TfiI	GAWTC	7 cut(s)	348, 845, 1539, 1549, 1614, 1783, 2284
TscAI	CASTG	2 cut(s)	603, 651
TseFI	GTSAC	3 cut(s)	598, 828, 2227
Tsp45I	GTSAC	3 cut(s)	598, 828, 2227
TspDTI	ATGAA	7 cut(s)	71, 205, 456, 839, 1323, 1469, 2113
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	603, 651
Tth111I	GACNNNGTC	1 cut(s)	706
VneI	GTGCAC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	2423
VspI	ATTAAT	1 cut(s)	1533
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	6 cut(s)	203, 443, 1645, 2131, 2153, 2558
XceI	RCATGY	1 cut(s)	1205
XcmI	CCANNNNNNNNNTGG	2 cut(s)	384, 1321
XmiI	GTMKAC	3 cut(s)	168, 838, 2103
XmnI	GAANNNNTTC	3 cut(s)	206, 2032, 2288
XspI	CTAG	5 cut(s)	711, 918, 1032, 1178, 1490
ZraI	GACGTC	1 cut(s)	949
ZrmI	AGTACT	1 cut(s)	1693
Zsp2I	ATGCAT	2 cut(s)	307, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.