Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Forward (+)

4668649 .. 4669667

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGGTTAATCTTTACTACGCTTGCTGCATTGATACTGGGTTCAGCATTTTGGGATGTTGGTACAAAAAGGGACTCGATTCAATCATTGATGATGGTTATGGGAGCTCTTTATTCTACTTGTTTGTTTCTTGGGGTCAATAACGCTTCTTCAGTTCAGCCAATTGTTTCGATTGAGAGGACAGTATTTTATAGAGAGAAAGCAGCTGGAAAGGATTCTCCTTTGGCTTATGCAGCGGCCCAGGGGCTTATAGGGATCCCATACATTGTTGTACAGATAATAGTATACGGGGTGATCACATACTTCATGATCAATTTTGAAAGGACAATCACAAAATTCTTGCTTTATATTCTGTTCATGTTCCTCACGTTCAAGTACTTCACGCTTTTTGGCATGGCGGCTGTTGGGATCACTGCTTCTCAACCCCTGGCAGCTGCCATCTCTGCTGCATTTTACTCATTGTGGAATCTATTCTCCGGTTTCCTCGTCCCCAAATCAGTTGAACATCCCGGTATGGTGGCTTTGGTTTTACTACGTACATCTCCCCAGTTGCATGGACACATAGAGGAATTATCACTTCCCAACTTGGTGATGTGGAGACCATTCTTGTGGGACCTGCGTTTAAGGGCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

212

Amino Acids

23.55

Weight (kDa)

9.44

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 168	2.5e-35	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	236, 398
AclWI	GGATC	3 cut(s)	250, 263, 416
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	4 cut(s)	64, 273, 377, 538
AgsI	TTSAA	4 cut(s)	83, 320, 373, 503
AjnI	CCWGG	2 cut(s)	240, 426
AluBI	AGCT	3 cut(s)	107, 206, 434
AluI	AGCT	3 cut(s)	107, 206, 434
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	3 cut(s)	250, 263, 416
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	6 cut(s)	26, 203, 233, 431, 434, 446
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	2 cut(s)	214, 470
AspS9I	GGNCC	2 cut(s)	238, 613
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	304, 601
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	631
BamHI	GGATCC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	6 cut(s)	13, 215, 245, 421, 433, 443
BccI	CCATC	2 cut(s)	88, 446
BciT130I	CCWGG	2 cut(s)	242, 428
BclI	TGATCA	2 cut(s)	294, 309
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	592
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	8 cut(s)	27, 204, 234, 237, 399, 432, 435, 447
BlsI	GCNGC	8 cut(s)	28, 205, 235, 238, 400, 433, 436, 448
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	3 cut(s)	242, 428, 510
Bme18I	GGWCC	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	238, 613
BmiI	GGNNCC	3 cut(s)	257, 614, 630
BmrFI	CCNGG	3 cut(s)	242, 428, 510
BmrI	ACTGGG	2 cut(s)	47, 541
BmuI	ACTGGG	2 cut(s)	47, 541
BpuMI	CCSGG	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	240, 241, 426
BsaWI	WCCGGW	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	42, 547
BseBI	CCWGG	2 cut(s)	242, 428
BseDI	CCNNGG	3 cut(s)	240, 241, 426
BseGI	GGATG	2 cut(s)	61, 505
BseNI	ACTGG	2 cut(s)	42, 547
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	6 cut(s)	13, 215, 245, 421, 433, 443
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	477, 510
BslFI	GGGAC	3 cut(s)	86, 473, 626
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	3 cut(s)	86, 473, 626
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	109, 631
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	255, 294, 309, 408
BspACI	CCGC	2 cut(s)	236, 398
BspANI	GGCC	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	257, 614, 630
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	3 cut(s)	250, 263, 416
BspT107I	GGYRCC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	592
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	42, 547
BssECI	CCNNGG	3 cut(s)	240, 241, 426
BssMI	GATC	4 cut(s)	255, 294, 309, 408
BssNAI	GTATAC	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	242, 428
Bst4CI	ACNGT	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	271
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	61, 505
BstKTI	GATC	4 cut(s)	258, 297, 312, 411
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	4 cut(s)	255, 294, 309, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 443
BstNI	CCWGG	2 cut(s)	242, 428
BstSCI	CCNGG	3 cut(s)	240, 426, 508
BstSLI	GKGCMC	1 cut(s)	631
BstSNI	TACGTA	1 cut(s)	536
BstV1I	GCAGC	6 cut(s)	13, 215, 245, 421, 433, 443
BstX2I	RGATCY	1 cut(s)	255
BstXI	CCANNNNNNTGG	2 cut(s)	554, 609
BstYI	RGATCY	1 cut(s)	255
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	61, 505
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	238, 613
Csp6I	GTAC	4 cut(s)	63, 272, 376, 537
CviAII	CATG	4 cut(s)	307, 358, 394, 554
CviJI	RGCY	9 cut(s)	107, 160, 206, 227, 239, 247, 401, 434, 521
CviKI_1	RGCY	9 cut(s)	107, 160, 206, 227, 239, 247, 401, 434, 521
CviQI	GTAC	4 cut(s)	63, 272, 376, 537
DpnI	GATC	4 cut(s)	257, 296, 311, 410
DpnII	GATC	4 cut(s)	255, 294, 309, 408
Ecl136II	GAGCTC	1 cut(s)	107
Eco105I	TACGTA	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	240, 426
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	4 cut(s)	310, 361, 397, 557
FalI	AAGNNNNNCTT	1 cut(s)	616
FaqI	GGGAC	3 cut(s)	86, 473, 626
FatI	CATG	4 cut(s)	306, 357, 393, 553
FbaI	TGATCA	2 cut(s)	294, 309
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	8 cut(s)	27, 204, 234, 237, 399, 432, 435, 447
FokI	GGATG	2 cut(s)	68, 492
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	8 cut(s)	27, 204, 234, 237, 399, 432, 435, 447
GluI	GCNGC	8 cut(s)	27, 204, 234, 237, 399, 432, 435, 447
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	477, 510
Hin1II	CATG	4 cut(s)	310, 361, 397, 557
HinfI	GANTC	4 cut(s)	74, 79, 215, 466
HpaII	CCGG	2 cut(s)	477, 510
HphI	GGTGA	2 cut(s)	304, 601
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	368, 535
HpyCH4V	TGCA	4 cut(s)	29, 233, 449, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 443
HpySE526I	ACGT	2 cut(s)	368, 535
Hsp92II	CATG	4 cut(s)	310, 361, 397, 557
Ksp22I	TGATCA	2 cut(s)	294, 309
Kzo9I	GATC	4 cut(s)	255, 294, 309, 408
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	6 cut(s)	13, 215, 245, 421, 433, 443
MaeII	ACGT	2 cut(s)	368, 535
MalI	GATC	4 cut(s)	257, 296, 311, 410
MboI	GATC	4 cut(s)	255, 294, 309, 408
MboII	GAAGA	1 cut(s)	141
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	109, 631
MluCI	AATT	4 cut(s)	162, 313, 335, 569
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	171, 374, 494, 559
MroXI	GAANNNNTTC	2 cut(s)	214, 470
MseI	TTAA	2 cut(s)	8, 623
MslI	CAYNNNNRTG	1 cut(s)	607
MspA1I	CMGCKG	3 cut(s)	206, 236, 434
MspI	CCGG	2 cut(s)	477, 510
MspR9I	CCNGG	3 cut(s)	242, 428, 510
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	242, 428
MwoI	GCNNNNNNNGC	2 cut(s)	233, 443
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	4 cut(s)	255, 294, 309, 408
NlaIII	CATG	4 cut(s)	310, 361, 397, 557
NlaIV	GGNNCC	3 cut(s)	257, 614, 630
PagI	TCATGA	1 cut(s)	306
PasI	CCCWGGG	1 cut(s)	241
PdmI	GAANNNNTTC	2 cut(s)	214, 470
PfeI	GAWTC	3 cut(s)	79, 215, 466
PkrI	GCNGC	8 cut(s)	28, 205, 235, 238, 400, 433, 436, 448
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	240, 426
PspGI	CCWGG	2 cut(s)	240, 426
PspN4I	GGNNCC	3 cut(s)	257, 614, 630
PspPI	GGNCC	2 cut(s)	238, 613
PspPPI	RGGWCCY	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	255
PvuII	CAGCTG	2 cut(s)	206, 434
RsaI	GTAC	4 cut(s)	64, 273, 377, 538
RsaNI	GTAC	4 cut(s)	63, 272, 376, 537
RseI	CAYNNNNRTG	1 cut(s)	607
SacI	GAGCTC	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	8, 623
SatI	GCNGC	8 cut(s)	27, 204, 234, 237, 399, 432, 435, 447
Sau3AI	GATC	4 cut(s)	255, 294, 309, 408
Sau96I	GGNCC	2 cut(s)	238, 613
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	242, 428, 510
SduI	GDGCHC	2 cut(s)	109, 631
SetI	ASST	8 cut(s)	8, 109, 208, 371, 436, 538, 618, 634
SinI	GGWCC	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	607
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	4 cut(s)	162, 313, 335, 569
SsiI	CCGC	2 cut(s)	236, 398
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	240, 426, 508
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	371, 538
TaqI	TCGA	2 cut(s)	77, 170
TasI	AATT	4 cut(s)	162, 313, 335, 569
TatI	WGTACW	2 cut(s)	271, 375
TauI	GCSGC	2 cut(s)	239, 401
TfiI	GAWTC	3 cut(s)	79, 215, 466
Tru1I	TTAA	2 cut(s)	8, 623
Tru9I	TTAA	2 cut(s)	8, 623
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	6 cut(s)	26, 203, 233, 431, 434, 446
TspDTI	ATGAA	2 cut(s)	295, 346
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	214, 470
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.