Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Reverse (-)

5802185 .. 5803035

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1071100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATGCCAAAAGTACTTTGCCCCTTATTGCAATTTATAAACGAAGTTATGTATGATTTCACCAATATGTTCCATAGGGACTCGCCTCAAGCACTGATGACGGTTATGGGAGCTCTTTATGCCGCTTGCTTGTTTCTTGGGGTCAATAACGCTTCATCAGTTCAACCAATTGTTTCAATTGAGAGGACAGTATTCTATAGACAGAAAGCAGCCGGGATGTATTCTCCATTAGCTTATGCAGCAGCCCAGTATTATTTTCTAAATTCACAAGTGAACACTGCAACCCGAAATTCAAATTCTGTTTGGTTATGTGTTGTAGGAATGTTTTTGCTCTATATTGTGTTCATGTTCCTCACATTCACCTACTTTACCCTCTATGGTATGGCGGCTGTTGGTGTCACATCTTCTCAACATCTTGCCGCTGTTGTCTCCTCTACTTTCTACTCTTTGTGGAATCTCCTCTCGGGTTTTCTTGTCCCAAAGCCAGTAAGTAATATGCTTACAATCGCTGCATATCTAGTTCATTATTCAATGTCTCGGCCTTTGTTTCAGAAAAACCAATCGTTTTACTCGTTAACTAACCTTTGGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

199

Amino Acids

22.42

Weight (kDa)

9.15

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	22 - 164	9.4e-18	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AciI	CCGC	3 cut(s)	123, 386, 420
AcsI	RAATTY	3 cut(s)	262, 289, 295
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	4 cut(s)	164, 177, 294, 531
AluBI	AGCT	2 cut(s)	113, 233
AluI	AGCT	2 cut(s)	113, 233
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	433, 540
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	4 cut(s)	209, 239, 242, 509
ApoI	RAATTY	3 cut(s)	262, 289, 295
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	52, 352
AvaI	CYCGRG	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	4 cut(s)	221, 251, 254, 496
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	433, 540
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	7 cut(s)	123, 210, 240, 243, 387, 420, 510
BlsI	GCNGC	7 cut(s)	124, 211, 241, 244, 388, 421, 511
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	247, 485
BseGI	GGATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	247, 485
BseRI	GAGGAG	2 cut(s)	421, 449
BseXI	GCAGC	4 cut(s)	221, 251, 254, 496
BshFI	GGCC	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	92, 461
BsmAI	GTCTC	2 cut(s)	433, 540
BsmFI	GGGAC	2 cut(s)	92, 461
BsnI	GGCC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	115
BspACI	CCGC	3 cut(s)	123, 386, 420
BspANI	GGCC	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	247, 485
Bst4CI	ACNGT	2 cut(s)	103, 190
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	433, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 239
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	4 cut(s)	221, 251, 254, 496
BsuRI	GGCC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	92, 276
Cac8I	GCNNGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	7 cut(s)	113, 212, 233, 245, 389, 484, 541
CviKI_1	RGCY	7 cut(s)	113, 212, 233, 245, 389, 484, 541
CviQI	GTAC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	115
FaeI	CATG	1 cut(s)	349
FaqI	GGGAC	2 cut(s)	92, 461
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	7 cut(s)	123, 210, 240, 243, 387, 420, 510
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	7 cut(s)	123, 210, 240, 243, 387, 420, 510
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	7 cut(s)	123, 210, 240, 243, 387, 420, 510
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	2 cut(s)	80, 454
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	52, 352
Hpy166II	GTNNAC	2 cut(s)	274, 576
Hpy188I	TCNGA	1 cut(s)	552
Hpy8I	GTNNAC	2 cut(s)	274, 576
HpyCH4III	ACNGT	2 cut(s)	103, 190
HpyCH4V	TGCA	4 cut(s)	31, 239, 281, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 239
Hsp92II	CATG	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	226, 260, 498
Lsp1109I	GCAGC	4 cut(s)	221, 251, 254, 496
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	397
MboII	GAAGA	1 cut(s)	396
MfeI	CAATTG	2 cut(s)	168, 177
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	6 cut(s)	32, 168, 177, 262, 289, 295
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	96, 177, 362, 383, 442, 470
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	2 cut(s)	168, 177
MwoI	GCNNNNNNNGC	2 cut(s)	119, 239
NciI	CCSGG	1 cut(s)	214
NlaIII	CATG	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	7 cut(s)	124, 211, 241, 244, 388, 421, 511
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	7 cut(s)	123, 210, 240, 243, 387, 420, 510
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	115, 235, 365, 585
SfcI	CTRYAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	6 cut(s)	32, 168, 177, 262, 289, 295
SsiI	CCGC	3 cut(s)	123, 386, 420
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	103, 190
TasI	AATT	6 cut(s)	32, 168, 177, 262, 289, 295
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	3 cut(s)	125, 389, 422
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	99, 283
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	4 cut(s)	209, 239, 242, 509
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	3 cut(s)	144, 334, 512
TspRI	CASTG	2 cut(s)	99, 283
XapI	RAATTY	3 cut(s)	262, 289, 295
XspI	CTAG	1 cut(s)	518
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.