Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Reverse (-)

61714665 .. 61719241

Gene Structure 4577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGACGACGACGGCCTCAACAATCGTCATAGCTTGGATACAATCTCTTCATGGTCGACGTGGGTGTCCTCGGTCAAATTTATTGACCACCCCCACGGAGGAAAGCTAGTCCAGCACTCCCAGACAATGATAAACTACTTTCAGGAGATCAATGGAATCACTCTGATTCCAAGCAGGTACAATCCAGCAACCTGGATGCTGAAGGTAACCACTCCGGCTTGTGAACAGAGAATTGGTGAAGACTTTGCTACCATATACAGAAATTCAAAGCAGTACAGTCCACAGTATAATGCCACGAGGTTAATCTTTACTACGCTTGCTGCATTGATACTGGGTTCAGCATTTTGGGATATTGGTACAAAAAGGGACTCGATTCAATCATTGATGATGGTTATGGGAGCTCTTTATTCTGCTTGTTTGTTTCTTGGGGTCAATAACGCTTCTTCAGTTCAGCCAATTGTTCCGATTAAGAAGACAGTATTTTATCAAGAGAATGCAGCTAGAAAGTATTCTCCTTTGGCTTATGCAGCGGCCCAGATTCAGCTACATTCTCTGGATGATTGGAGTTTCAGTAGCTGTGCTTCTGGGCTTCAACGTCCTTTTATTCAGTATGTTTGCCTTCTCCATCAAATTTCTCAACTTCCAGAGAAGATAGACTGGCCCAGCGGCCCAGCCATAGAAATAAGCATTATTAAGCACCCAAATTTACCCTTCTCTAGCTTCTTACAAGAATTCTTGAGGATAGTTGCAAATTTTATTGGATGTAATTTCATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

259

Amino Acids

29.19

Weight (kDa)

7.67

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	87 - 180	3.9e-15	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	56
AciI	CCGC	2 cut(s)	530, 666
AcsI	RAATTY	6 cut(s)	77, 262, 630, 703, 731, 751
AcuI	CTGAAG	2 cut(s)	221, 429
AfaI	GTAC	3 cut(s)	179, 275, 358
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	267, 377, 593
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	7 cut(s)	33, 106, 401, 500, 544, 576, 720
AluI	AGCT	7 cut(s)	33, 106, 401, 500, 544, 576, 720
Alw21I	GWGCWC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	576
AoxI	GGCC	4 cut(s)	13, 531, 659, 667
ApeKI	GCWGC	3 cut(s)	320, 497, 527
ApoI	RAATTY	6 cut(s)	77, 262, 630, 703, 731, 751
Asp700I	GAANNNNTTC	1 cut(s)	508
AspS9I	GGNCC	3 cut(s)	532, 660, 668
AsuHPI	GGTGA	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	403
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
BauI	CACGAG	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	246, 479
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	307, 509, 539
BccI	CCATC	2 cut(s)	382, 633
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	107, 501, 717
BfuAI	ACCTGC	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	5 cut(s)	321, 498, 528, 531, 667
BlsI	GCNGC	5 cut(s)	322, 499, 529, 532, 668
Bme1390I	CCNGG	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	532, 660, 668
BmrFI	CCNGG	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	2 cut(s)	246, 479
BpuEI	CTTGAG	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	69, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	336, 662
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	69, 94
BseGI	GGATG	3 cut(s)	201, 562, 767
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	336, 662
BseXI	GCAGC	3 cut(s)	307, 509, 539
BseYI	CCCAGC	2 cut(s)	662, 670
BshFI	GGCC	4 cut(s)	15, 533, 661, 669
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	4 cut(s)	15, 533, 661, 669
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	530, 666
BspANI	GGCC	4 cut(s)	15, 533, 661, 669
BspMI	ACCTGC	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	336, 662
BssECI	CCNNGG	2 cut(s)	69, 94
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	3 cut(s)	278, 285, 478
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	94
BstEII	GGTNACC	1 cut(s)	205
BstF5I	GGATG	3 cut(s)	201, 562, 767
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 527
BstNI	CCWGG	1 cut(s)	193
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	307, 509, 539
BstV2I	GAAGAC	2 cut(s)	246, 479
BstXI	CCANNNNNNTGG	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	15, 533, 661, 669
BtgI	CCRYGG	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	201, 562, 767
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	532, 660, 668
Csp6I	GTAC	3 cut(s)	178, 274, 357
CviAII	CATG	1 cut(s)	51
CviQI	GTAC	3 cut(s)	178, 274, 357
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	221, 429
Eco91I	GGTNACC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	1 cut(s)	54
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	50
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	321, 498, 528, 531, 667
FokI	GGATG	3 cut(s)	208, 569, 774
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	5 cut(s)	321, 498, 528, 531, 667
FspBI	CTAG	3 cut(s)	107, 501, 717
GluI	GCNGC	5 cut(s)	321, 498, 528, 531, 667
GsaI	CCCAGC	2 cut(s)	666, 674
HaeIII	GGCC	4 cut(s)	15, 533, 661, 669
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	5 cut(s)	156, 166, 368, 373, 538
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	3 cut(s)	57, 224, 281
Hpy188I	TCNGA	2 cut(s)	165, 465
Hpy188III	TCNNGA	5 cut(s)	143, 488, 554, 644, 736
Hpy8I	GTNNAC	3 cut(s)	57, 224, 281
Hpy99I	CGWCG	3 cut(s)	11, 14, 61
HpyAV	CCTTC	3 cut(s)	196, 629, 721
HpyCH4III	ACNGT	3 cut(s)	278, 285, 478
HpyCH4IV	ACGT	2 cut(s)	59, 595
HpyCH4V	TGCA	4 cut(s)	323, 497, 527, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 527
HpySE526I	ACGT	2 cut(s)	59, 595
Hsp92II	CATG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	3 cut(s)	307, 509, 539
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	3 cut(s)	107, 501, 717
MaeII	ACGT	2 cut(s)	59, 595
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	5 cut(s)	39, 251, 435, 484, 661
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	9 cut(s)	77, 231, 262, 456, 630, 703, 731, 751, 766
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	26, 79, 92, 291, 732
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	3 cut(s)	302, 468, 693
MspA1I	CMGCKG	2 cut(s)	530, 666
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	112, 527
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	54
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	4 cut(s)	156, 166, 373, 538
PkrI	GCNGC	5 cut(s)	322, 499, 529, 532, 668
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	205
PspFI	CCCAGC	2 cut(s)	662, 670
PspGI	CCWGG	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	532, 660, 668
PstNI	CAGNNNCTG	1 cut(s)	576
RsaI	GTAC	3 cut(s)	179, 275, 358
RsaNI	GTAC	3 cut(s)	178, 274, 357
SacI	GAGCTC	1 cut(s)	403
SalI	GTCGAC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	302, 468, 693
SatI	GCNGC	5 cut(s)	321, 498, 528, 531, 667
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	3 cut(s)	532, 660, 668
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	9 cut(s)	77, 231, 262, 456, 630, 703, 731, 751, 766
SsiI	CCGC	2 cut(s)	530, 666
SspMI	CTAG	3 cut(s)	107, 501, 717
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	278, 285, 478
TaiI	ACGT	2 cut(s)	62, 598
TaqI	TCGA	2 cut(s)	56, 371
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	9 cut(s)	77, 231, 262, 456, 630, 703, 731, 751, 766
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	2 cut(s)	533, 669
TfiI	GAWTC	4 cut(s)	156, 166, 373, 538
Tru1I	TTAA	3 cut(s)	302, 468, 693
Tru9I	TTAA	3 cut(s)	302, 468, 693
TseI	GCWGC	3 cut(s)	320, 497, 527
TspDTI	ATGAA	2 cut(s)	39, 760
TspGWI	ACGGA	1 cut(s)	111
XapI	RAATTY	6 cut(s)	77, 262, 630, 703, 731, 751
XmiI	GTMKAC	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	3 cut(s)	107, 501, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.