Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Forward (+)

75339042 .. 75353447

Gene Structure 14406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG473400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAAAAATCTGGTCAAGTTAGAGAAGGAAAAAGACATAAGGCCAGATCCAGTAACGTCTAAAAAAGATCAAGCTCAGTACTGGGCTGATCAATTGAAACCGTACGCATACATTTCTGTTTCAGAAATTGCAGAAGCCTTTAAGAAGTCCAGGTTTGGAAGGTCTGTGGATGACACTCTCTCTGCTCCATATGATAAATCTAGCAGTCTTCCTGCGGCTTTGCCAAAAACTAAATATGCAACCTCAAAATGGGAGCTTTGTAAAGCATGCTTTTCACGAGAACTACTGTTGATCAGCAGGCATAGGTTTCTTTACACATTTAGGACCTGCCAGGTTGCATTTGTTGGGGCTGTGACTTGTACAATGTTTTCTAGATTGAAATTACACCCGACAGATGAAATAAATGGCAACCTTTATCTTTCTTGCTTGTTCTTTGGGTTGGTGCACATGATGTTTAATGGGTTTTCCGAGCTACCTCTTATGATATCTCGGCTTCCAGTCTTTTACAAGCAAAGAGACAATCACTTTCATCCTGCATGGGCATGGTCTGTTGTTAGTTTGCTTCTGCGCATACCTTACTCTATTATCGAAGCTGTTGTATGGTCTTGTGTCGTATACTACTCGGTTGGATTTGCCCCTGGTGCTGGGAGATTTTTCCGTTTCATGTTTTTGCTGTTCTCTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACAATGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCACTAATTATTATATTTTCTTTTGGTGGATTCATCATTCCCAAAGCACTAAGGAAAAATCAGACAGTGCTTCCACTTGATGACACACAAGAGAGTCCTGCTGCAGATGCTTCTTCTTATGAAACGAGGGGGGCAAGTTATTTATGGAGGAAACCTAGGCCAGCACTCCCAGACAATGATAAACTACTTTCAGGAAACACCCCAAGACAAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

327

Amino Acids

37.16

Weight (kDa)

9.4

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	86 - 270	8.5e-38	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	615
AccIII	TCCGGA	1 cut(s)	708
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	2 cut(s)	41, 766
AfaI	GTAC	3 cut(s)	80, 104, 361
AfiI	CCNNNNNNNGG	3 cut(s)	249, 644, 715
AgsI	TTSAA	2 cut(s)	97, 379
AjnI	CCWGG	3 cut(s)	149, 330, 637
AluBI	AGCT	5 cut(s)	74, 256, 472, 593, 764
AluI	AGCT	5 cut(s)	74, 256, 472, 593, 764
Alw21I	GWGCWC	2 cut(s)	447, 687
Alw26I	GTCTC	2 cut(s)	510, 707
Alw44I	GTGCAC	2 cut(s)	443, 683
AlwI	GGATC	2 cut(s)	41, 766
Aor13HI	TCCGGA	1 cut(s)	708
AoxI	GGCC	2 cut(s)	41, 923
ApaLI	GTGCAC	2 cut(s)	443, 683
ApeKI	GCWGC	2 cut(s)	764, 866
AspA2I	CCTAGG	1 cut(s)	920
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	324
AvrII	CCTAGG	1 cut(s)	920
BaeGI	GKGCMC	2 cut(s)	447, 687
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	447, 687
BbvI	GCAGC	2 cut(s)	751, 853
BciT130I	CCWGG	3 cut(s)	151, 332, 639
BclI	TGATCA	2 cut(s)	88, 291
BcoDI	GTCTC	2 cut(s)	510, 707
BfaI	CTAG	3 cut(s)	201, 372, 921
BfmI	CTRYAG	1 cut(s)	867
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	3 cut(s)	216, 765, 867
BlnI	CCTAGG	1 cut(s)	920
BlsI	GCNGC	3 cut(s)	217, 766, 868
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	151, 332, 639
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	151, 332, 639
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	2 cut(s)	728, 862
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	637, 920
BsaWI	WCCGGW	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 644, 715
Bse1I	ACTGG	3 cut(s)	50, 86, 497
Bse3DI	GCAATG	1 cut(s)	741
BseAI	TCCGGA	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	151, 332, 639
BseDI	CCNNGG	2 cut(s)	637, 920
BseGI	GGATG	2 cut(s)	175, 529
BseLI	CCNNNNNNNGG	3 cut(s)	249, 644, 715
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	3 cut(s)	50, 86, 497
BseSI	GKGCMC	2 cut(s)	447, 687
BseXI	GCAGC	2 cut(s)	751, 853
BseYI	CCCAGC	1 cut(s)	644
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	43, 925
BsiHKAI	GWGCWC	2 cut(s)	447, 687
BsiSI	CCGG	1 cut(s)	709
BsiWI	CGTACG	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	249, 644, 715
BsmAI	GTCTC	2 cut(s)	510, 707
BsnI	GGCC	2 cut(s)	43, 925
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	447, 687
Bsp13I	TCCGGA	1 cut(s)	708
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	46, 67, 88, 291, 758
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	2 cut(s)	43, 925
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	708
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	41, 766
BspTNI	GGTCTC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	741
BsrGI	TGTACA	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	50, 86, 497
BssECI	CCNNGG	2 cut(s)	637, 920
BssMI	GATC	5 cut(s)	46, 67, 88, 291, 758
BssNAI	GTATAC	1 cut(s)	616
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	920
Bst1107I	GTATAC	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	3 cut(s)	151, 332, 639
Bst4CI	ACNGT	3 cut(s)	102, 288, 832
Bst6I	CTCTTC	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	268, 299, 927
BstDEI	CTNAG	2 cut(s)	75, 815
BstF5I	GGATG	2 cut(s)	175, 529
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	5 cut(s)	49, 70, 91, 294, 761
BstMAI	GTCTC	2 cut(s)	510, 707
BstMBI	GATC	5 cut(s)	46, 67, 88, 291, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	641, 725, 872
BstNI	CCWGG	3 cut(s)	151, 332, 639
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	3 cut(s)	149, 330, 637
BstSFI	CTRYAG	1 cut(s)	867
BstSLI	GKGCMC	2 cut(s)	447, 687
BstV1I	GCAGC	2 cut(s)	751, 853
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	43, 925
BtsCI	GGATG	2 cut(s)	175, 529
BtsIMutI	CAGTG	1 cut(s)	837
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	268, 299, 927
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	3 cut(s)	79, 103, 360
CviAII	CATG	5 cut(s)	267, 448, 537, 543, 664
CviQI	GTAC	3 cut(s)	79, 103, 360
DdeI	CTNAG	2 cut(s)	75, 815
DpnI	GATC	5 cut(s)	48, 69, 90, 293, 760
DpnII	GATC	5 cut(s)	46, 67, 88, 291, 758
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	920
Eco31I	GGTCTC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	149, 330, 637
EcoRV	GATATC	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	920
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	5 cut(s)	270, 451, 540, 546, 667
FatI	CATG	5 cut(s)	266, 447, 536, 542, 663
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	2 cut(s)	88, 291
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	216, 765, 867
FokI	GGATG	2 cut(s)	182, 516
Fsp4HI	GCNGC	3 cut(s)	216, 765, 867
FspBI	CTAG	3 cut(s)	201, 372, 921
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	3 cut(s)	216, 765, 867
GsaI	CCCAGC	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	43, 925
HapII	CCGG	1 cut(s)	709
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	5 cut(s)	270, 451, 540, 546, 667
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HinfI	GANTC	2 cut(s)	795, 859
HpaII	CCGG	1 cut(s)	709
Hpy166II	GTNNAC	3 cut(s)	445, 616, 685
Hpy188I	TCNGA	3 cut(s)	124, 469, 828
Hpy188III	TCNNGA	4 cut(s)	276, 372, 709, 957
Hpy8I	GTNNAC	3 cut(s)	445, 616, 685
HpyAV	CCTTC	2 cut(s)	19, 153
HpyCH4III	ACNGT	3 cut(s)	102, 288, 832
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	9 cut(s)	131, 239, 338, 445, 536, 685, 728, 767, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	641, 725, 872
HpyF3I	CTNAG	2 cut(s)	75, 815
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	270, 451, 540, 546, 667
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	708
Ksp22I	TGATCA	2 cut(s)	88, 291
Kzo9I	GATC	5 cut(s)	46, 67, 88, 291, 758
LmnI	GCTCC	2 cut(s)	190, 253
Lsp1109I	GCAGC	2 cut(s)	751, 853
LweI	GCATC	2 cut(s)	728, 862
MaeI	CTAG	3 cut(s)	201, 372, 921
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	52, 352
MalI	GATC	5 cut(s)	48, 69, 90, 293, 760
MboI	GATC	5 cut(s)	46, 67, 88, 291, 758
MboII	GAAGA	3 cut(s)	200, 697, 870
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	447, 687
MluCI	AATT	4 cut(s)	92, 126, 380, 771
MlyI	GAGTC	1 cut(s)	868
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	4 cut(s)	253, 486, 885, 906
MroI	TCCGGA	1 cut(s)	708
MseI	TTAA	2 cut(s)	141, 456
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	3 cut(s)	151, 332, 639
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	3 cut(s)	151, 332, 639
MwoI	GCNNNNNNNGC	3 cut(s)	641, 725, 872
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	5 cut(s)	46, 67, 88, 291, 758
NlaIII	CATG	5 cut(s)	270, 451, 540, 546, 667
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	569
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	795
Pfl23II	CGTACG	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	217, 766, 868
PleI	GAGTC	1 cut(s)	867
PpsI	GAGTC	1 cut(s)	867
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	3 cut(s)	149, 330, 637
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	3 cut(s)	149, 330, 637
PspLI	CGTACG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	80, 104, 361
RsaNI	GTAC	3 cut(s)	79, 103, 360
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	2 cut(s)	141, 456
SatI	GCNGC	3 cut(s)	216, 765, 867
Sau3AI	GATC	5 cut(s)	46, 67, 88, 291, 758
Sau96I	GGNCC	1 cut(s)	324
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	1 cut(s)	868
ScrFI	CCNGG	3 cut(s)	151, 332, 639
SduI	GDGCHC	2 cut(s)	447, 687
SfaNI	GCATC	2 cut(s)	728, 862
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	541
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	4 cut(s)	92, 126, 380, 771
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	3 cut(s)	201, 372, 921
StyD4I	CCNGG	3 cut(s)	149, 330, 637
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	3 cut(s)	102, 288, 832
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	588
TasI	AATT	4 cut(s)	92, 126, 380, 771
TatI	WGTACW	2 cut(s)	78, 359
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	795
Tru1I	TTAA	2 cut(s)	141, 456
Tru9I	TTAA	2 cut(s)	141, 456
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	764, 866
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	6 cut(s)	17, 411, 518, 652, 787, 900
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	1 cut(s)	837
VneI	GTGCAC	2 cut(s)	443, 683
VpaK11BI	GGWCC	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	1 cut(s)	270
XmaJI	CCTAGG	1 cut(s)	920
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	3 cut(s)	201, 372, 921
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.