Rh4DG388300
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007618
Physical Location & Seq
Reverse (-)
60450877 .. 60452912
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG388300.1

Sequence Viewer

Length: 1281 bp
ATGGATGAACCCACATCTGGACTGGACGCAAGGGCAGCAGCCATTGTGATGAGGACTGTTCGTAATACTGTTGATACAGGAAGAACGGTGGTCTGCACTATACACCAACCAAGTATCGACATTTTTGAGTCATTTGACGAGCTTCTTCTTATGAAACGAGGGGGGCAAGTTATATATGGAGGAAAGCTAGGCCAGCACTCCCAGACAATGATAAACTACTTTCAGGAGATTAATGGAATCACTCCGATTCCAAGCGGGTACAATCCAGCAACCTGGATGCTGGAGGTAACCACACCGTCTTGTAAACAGAGAATCGGAGAAGACTTCGCTACCATATACAGGAATTCAGAGCAGTACAGGGAGGTGGAAGAGTCCATCAAGCAGTTGAGTACTCCTCCAACCGACTCAAAACCATTAAAGTTTGCTTCCACATATTCACAGAACACATTGGCTCAATTTAGGAACTGCTTATGGAAACAGAATCTCGTGTATTGGAGAAGTCCACAATATAATGCGATGAGGTTAATCTTTACTATCCTTGCTGCATTGATACTGGGCTCGGCATTTTGGGATGTCGGTACAAAAAGGGACTCGCTTCAATCATTGATGATGGTTATGGGAGCTCTTTATTCTGCTTGTTTGTTTCTTGGGGTCAATAACGCTTCTTCAGTTCAGCCGATTGTTTCGATTGAGAGGACGGTATTTTATCGAGAGAAAGCAGCTGGAATGTATTCTTCTTTGGCTTATGCAGCGGCCCAGGGCCTTATAGAGATCCCATACATTGCTGTGCAGACAATAGTATACGGGGTGATCACATACTTCATGATAAATTTTGAAAGGACAATCACAAAATTCTTGCTCTATATTCTGATCATGTTCCTCACTTTCGTATATTTCACTCTTTTCGGCATGGCGGCTGTTTCTGTCACAGCTTCTCAACCCCTGGCAGCTGCCATCTCTGCTGCATTTTACTCATTGTGGAATCTATTCTCTGGTTTCCTCGTCCCCAAACCAAACATCCCGGTATGGTGGCTTTGGTTTTACTACATCTCCTCAGTTGCATGGACACTCAGAGGTATTATCACTTCCCAACTTGGTGATGTGGAGACCATTCTTGTCGGACCTGCGTTTAAGGGCACCTTGAAAGAATACTTGGAAGTCAGCCTTGGCTATGGCCCTGGGATGATTGGAGTTTCAGTAGCTGTGCTTCTGGGCTTCAACGTCCTTTTGTTCAGTATCTTTGCCTTCTCCATCAAATTTCTCAACTTCCAGAGAAGATAG

Protein Analysis

426

Amino Acids

47.8

Weight (kDa)

8.85

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 152 - 364 7.6e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1132
AccB1I GGYRCC 1 cut(s) 1136
AccI GTMKAC 1 cut(s) 801
AciI CCGC 3 cut(s) 255, 752, 914
AclWI GGATC 1 cut(s) 766
AcsI RAATTY 4 cut(s) 343, 829, 851, 1256
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 4 cut(s) 260, 356, 391, 580
AfiI CCNNNNNNNGG 2 cut(s) 17, 339
AgsI TTSAA 4 cut(s) 599, 836, 1144, 1219
AjnI CCWGG 4 cut(s) 272, 756, 942, 1177
AjuI GAANNNNNNNTTGG 4 cut(s) 1136, 1149, 1168, 1181
AluBI AGCT 7 cut(s) 142, 187, 623, 722, 932, 950, 1202
AluI AGCT 7 cut(s) 142, 187, 623, 722, 932, 950, 1202
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 1100
AlwI GGATC 1 cut(s) 766
AlwNI CAGNNNCTG 1 cut(s) 1202
AoxI GGCC 4 cut(s) 190, 753, 760, 1174
ApeKI GCWGC 8 cut(s) 35, 38, 542, 719, 749, 947, 950, 962
ApoI RAATTY 4 cut(s) 343, 829, 851, 1256
AseI ATTAAT 1 cut(s) 231
Asp700I GAANNNNTTC 2 cut(s) 730, 986
AspS9I GGNCC 4 cut(s) 754, 760, 1121, 1175
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 2 cut(s) 820, 1109
AvaII GGWCC 1 cut(s) 1121
BaeGI GKGCMC 1 cut(s) 1139
BanI GGYRCC 1 cut(s) 1136
BanII GRGCYC 2 cut(s) 560, 625
BarI GAAGNNNNNNTAC 4 cut(s) 1069, 1101, 1191, 1223
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 8 cut(s) 47, 50, 529, 731, 761, 937, 949, 959
BccI CCATC 4 cut(s) 383, 604, 962, 1259
BciT130I CCWGG 4 cut(s) 274, 758, 944, 1179
BclI TGATCA 2 cut(s) 810, 870
BcnI CCSGG 1 cut(s) 1022
BcoDI GTCTC 1 cut(s) 1100
BfaI CTAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 1132
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 5 cut(s) 274, 758, 944, 1022, 1179
Bme18I GGWCC 1 cut(s) 1121
BmgT120I GGNCC 4 cut(s) 754, 760, 1121, 1175
BmiI GGNNCC 1 cut(s) 1138
BmrFI CCNGG 5 cut(s) 274, 758, 944, 1022, 1179
BmrI ACTGGG 1 cut(s) 563
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpmI CTGGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 1022
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 6 cut(s) 756, 757, 942, 1165, 1177, 1178
BsaXI ACNNNNNCTCC 4 cut(s) 1034, 1064, 1182, 1212
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 339
Bse1I ACTGG 2 cut(s) 27, 558
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 4 cut(s) 274, 758, 944, 1179
BseDI CCNNGG 6 cut(s) 756, 757, 942, 1165, 1177, 1178
BseGI GGATG 5 cut(s) 10, 282, 577, 1017, 1188
BseLI CCNNNNNNNGG 2 cut(s) 17, 339
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 2 cut(s) 1068, 1084
BseNI ACTGG 2 cut(s) 27, 558
BseRI GAGGAG 2 cut(s) 384, 1042
BseSI GKGCMC 1 cut(s) 1139
BseXI GCAGC 8 cut(s) 47, 50, 529, 731, 761, 937, 949, 959
BsgI GTGCAG 2 cut(s) 79, 809
BshFI GGCC 4 cut(s) 192, 755, 762, 1176
BshNI GGYRCC 1 cut(s) 1136
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 1022
BslFI GGGAC 2 cut(s) 602, 989
BslI CCNNNNNNNGG 2 cut(s) 17, 339
BsmAI GTCTC 1 cut(s) 1100
BsmFI GGGAC 2 cut(s) 602, 989
BsnI GGCC 4 cut(s) 192, 755, 762, 1176
Bso31I GGTCTC 1 cut(s) 1100
Bsp1286I GDGCHC 3 cut(s) 560, 625, 1139
Bsp143I GATC 3 cut(s) 771, 810, 870
BspACI CCGC 3 cut(s) 255, 752, 914
BspANI GGCC 4 cut(s) 192, 755, 762, 1176
BspCNI CTCAG 2 cut(s) 1067, 1083
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 1138
BspMI ACCTGC 1 cut(s) 1132
BspPI GGATC 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 1136
BspTNI GGTCTC 1 cut(s) 1100
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 2 cut(s) 27, 558
BssECI CCNNGG 6 cut(s) 756, 757, 942, 1165, 1177, 1178
BssMI GATC 3 cut(s) 771, 810, 870
BssNAI GTATAC 1 cut(s) 802
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 1165
Bst1107I GTATAC 1 cut(s) 802
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 4 cut(s) 274, 758, 944, 1179
Bst4CI ACNGT 5 cut(s) 58, 70, 88, 297, 700
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 1054, 1070
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 5 cut(s) 10, 282, 577, 1017, 1188
BstKTI GATC 3 cut(s) 774, 813, 873
BstMAI GTCTC 1 cut(s) 1100
BstMBI GATC 3 cut(s) 771, 810, 870
BstMWI GCNNNNNNNGC 4 cut(s) 35, 193, 749, 959
BstNI CCWGG 4 cut(s) 274, 758, 944, 1179
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 5 cut(s) 272, 756, 942, 1020, 1177
BstSLI GKGCMC 1 cut(s) 1139
BstV1I GCAGC 8 cut(s) 47, 50, 529, 731, 761, 937, 949, 959
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 771
BstXI CCANNNNNNTGG 1 cut(s) 273
BstYI RGATCY 1 cut(s) 771
BstZ17I GTATAC 1 cut(s) 802
BsuRI GGCC 4 cut(s) 192, 755, 762, 1176
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 5 cut(s) 10, 282, 577, 1017, 1188
BveI ACCTGC 1 cut(s) 1132
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 1202
CciI TCATGA 1 cut(s) 822
Cfr13I GGNCC 4 cut(s) 754, 760, 1121, 1175
CseI GACGC 1 cut(s) 35
Csp6I GTAC 4 cut(s) 259, 355, 390, 579
CviAII CATG 4 cut(s) 823, 874, 910, 1062
CviQI GTAC 4 cut(s) 259, 355, 390, 579
DdeI CTNAG 2 cut(s) 1054, 1070
DpnI GATC 3 cut(s) 773, 812, 872
DpnII GATC 3 cut(s) 771, 810, 870
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 1165
Eco24I GRGCYC 2 cut(s) 560, 625
Eco31I GGTCTC 1 cut(s) 1100
Eco47I GGWCC 1 cut(s) 1121
Eco53kI GAGCTC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 651
Eco91I GGTNACC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 760
EcoO65I GGTNACC 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 4 cut(s) 272, 756, 942, 1177
EcoT14I CCWWGG 1 cut(s) 1165
EcoT38I GRGCYC 2 cut(s) 560, 625
ErhI CCWWGG 1 cut(s) 1165
FaeI CATG 4 cut(s) 826, 877, 913, 1065
FalI AAGNNNNNCTT 4 cut(s) 1124, 1156, 1149, 1181
FaqI GGGAC 2 cut(s) 602, 989
FatI CATG 4 cut(s) 822, 873, 909, 1061
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 2 cut(s) 810, 870
FblI GTMKAC 1 cut(s) 801
FokI GGATG 5 cut(s) 17, 289, 584, 1004, 1195
FriOI GRGCYC 2 cut(s) 560, 625
FspBI CTAG 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 4 cut(s) 192, 755, 762, 1176
HapII CCGG 1 cut(s) 1022
HgaI GACGC 1 cut(s) 35
Hin1II CATG 4 cut(s) 826, 877, 913, 1065
HinfI GANTC 9 cut(s) 128, 237, 247, 312, 371, 404, 481, 590, 982
HpaII CCGG 1 cut(s) 1022
HphI GGTGA 2 cut(s) 820, 1109
Hpy166II GTNNAC 3 cut(s) 305, 503, 802
Hpy188I TCNGA 6 cut(s) 246, 317, 349, 870, 1073, 1121
Hpy188III TCNNGA 5 cut(s) 18, 224, 710, 823, 1270
Hpy8I GTNNAC 3 cut(s) 305, 503, 802
HpyAV CCTTC 1 cut(s) 1255
HpyCH4III ACNGT 5 cut(s) 58, 70, 88, 297, 700
HpyCH4IV ACGT 1 cut(s) 1221
HpyCH4V TGCA 6 cut(s) 96, 545, 749, 790, 965, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 193, 749, 959
HpyF3I CTNAG 2 cut(s) 1054, 1070
HpySE526I ACGT 1 cut(s) 1221
Hsp92II CATG 4 cut(s) 826, 877, 913, 1065
Ksp22I TGATCA 2 cut(s) 810, 870
Kzo9I GATC 3 cut(s) 771, 810, 870
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 8 cut(s) 47, 50, 529, 731, 761, 937, 949, 959
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 2 cut(s) 286, 925
MalI GATC 3 cut(s) 773, 812, 872
MboI GATC 3 cut(s) 771, 810, 870
MboII GAAGA 6 cut(s) 93, 137, 332, 380, 657, 726
MflI RGATCY 1 cut(s) 771
MhlI GDGCHC 3 cut(s) 560, 625, 1139
MluCI AATT 5 cut(s) 343, 455, 829, 851, 1256
MlyI GAGTC 4 cut(s) 137, 380, 398, 584
MmeI TCCRAC 2 cut(s) 422, 1099
MroXI GAANNNNTTC 2 cut(s) 730, 986
MseI TTAA 4 cut(s) 231, 416, 524, 1131
MslI CAYNNNNRTG 2 cut(s) 47, 785
MspA1I CMGCKG 3 cut(s) 722, 752, 950
MspI CCGG 1 cut(s) 1022
MspR9I CCNGG 5 cut(s) 274, 758, 944, 1022, 1179
MvaI CCWGG 4 cut(s) 274, 758, 944, 1179
MwoI GCNNNNNNNGC 4 cut(s) 35, 193, 749, 959
NciI CCSGG 1 cut(s) 1022
NdeII GATC 3 cut(s) 771, 810, 870
NlaIII CATG 4 cut(s) 826, 877, 913, 1065
NlaIV GGNNCC 1 cut(s) 1138
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 925
PagI TCATGA 1 cut(s) 822
PasI CCCWGGG 2 cut(s) 757, 1178
PdmI GAANNNNTTC 2 cut(s) 730, 986
PfeI GAWTC 5 cut(s) 237, 247, 312, 481, 982
PleI GAGTC 4 cut(s) 136, 379, 398, 584
PpsI GAGTC 4 cut(s) 136, 379, 398, 584
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 625
Psp6I CCWGG 4 cut(s) 272, 756, 942, 1177
PspEI GGTNACC 1 cut(s) 286
PspGI CCWGG 4 cut(s) 272, 756, 942, 1177
PspN4I GGNNCC 1 cut(s) 1138
PspPI GGNCC 4 cut(s) 754, 760, 1121, 1175
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 771
PvuII CAGCTG 2 cut(s) 722, 950
RsaI GTAC 4 cut(s) 260, 356, 391, 580
RsaNI GTAC 4 cut(s) 259, 355, 390, 579
RseI CAYNNNNRTG 2 cut(s) 47, 785
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 4 cut(s) 231, 416, 524, 1131
Sau3AI GATC 3 cut(s) 771, 810, 870
Sau96I GGNCC 4 cut(s) 754, 760, 1121, 1175
ScaI AGTACT 1 cut(s) 391
SchI GAGTC 4 cut(s) 137, 380, 398, 584
ScrFI CCNGG 5 cut(s) 274, 758, 944, 1022, 1179
SduI GDGCHC 3 cut(s) 560, 625, 1139
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 1 cut(s) 1121
SmiMI CAYNNNNRTG 2 cut(s) 47, 785
Sse9I AATT 5 cut(s) 343, 455, 829, 851, 1256
SsiI CCGC 3 cut(s) 255, 752, 914
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 625
StyD4I CCNGG 5 cut(s) 272, 756, 942, 1020, 1177
StyI CCWWGG 1 cut(s) 1165
TaaI ACNGT 5 cut(s) 58, 70, 88, 297, 700
TaiI ACGT 1 cut(s) 1224
TaqI TCGA 3 cut(s) 117, 686, 709
TasI AATT 5 cut(s) 343, 455, 829, 851, 1256
TatI WGTACW 2 cut(s) 354, 389
TauI GCSGC 2 cut(s) 755, 917
TfiI GAWTC 5 cut(s) 237, 247, 312, 481, 982
Tru1I TTAA 4 cut(s) 231, 416, 524, 1131
Tru9I TTAA 4 cut(s) 231, 416, 524, 1131
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 8 cut(s) 35, 38, 542, 719, 749, 947, 950, 962
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 3 cut(s) 21, 167, 811
VpaK11BI GGWCC 1 cut(s) 1121
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 4 cut(s) 343, 829, 851, 1256
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 2 cut(s) 730, 986
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.