Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Reverse (-)

54618091 .. 54620650

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0397400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGTTTCGATCACACCAATCGAAAGCTTTGTCTGCATTTGATGCAACTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACTTTTCAACAAAAATATGTGATCAATTCCAAGTACTGGGGTGGTTCCAATATTAGTGCACCAATATTTGCTTACCTTGGCGCAGAAACATCATTGGATAGTGTTATATCTTATACTGGCTTTCTCCCTGAAAACGCCAATCAGTTTCAAGCTCTCCTCATATATATAGAGCACCGGTACTACGGAGAATCAATCCCATTCGGCTCTAGAACAGTAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCATACATGTAAAGACGCAACTGAATGCTGAACATTCTCCGGTCATTGTTATTGGTGCATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTAAAATACCCCCATATCGCTCTTGGAGCTCTAGCTTCATCGGCTCCGATTCTTTACTTTGATGACATTATTCCGCCAGAAAATGGATACTTCTCCATTGTCACGAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAACCATAAAACAGTCTTGGTCTGAAATTGATGCACTTGCTTCTATGCCTGATGGTCTCTCAAATCTTAGCAAAATGTTCCACACTTGCAGTCCCTTGAGCGCGGCATCCTATCTCAAATACTCCTTGCAGTCAATGTACATGAAGGCAGCTCAGTTCGATGATCCATCAACAAATCCAGTTAATATGATCTGCAACGGTATTGATGGAGCTTCTTCAACTAATGATACTCTTGCGAAAATATTTGCTGGCCTTGTTGCAATTGCAGGAAACAACTCATGCTACCTTAATGATGCACCCAGTAGTACTAATGCATTACCAAGCAGTACTAATGATGATGAAACATCTGTGGGATGGAGTTGGCAGGCATGTAGTGAAATGGTGATCCCGGTTTTTGCTATCGGCAACAACACCATGTTCCAACCTTCTTCTTTTGATCCACAAAGCTACAGTAACAACTGCAAGGCACAGTATGGCGTCCCTTCTCGCCCTAATTGGGTCACTACATATTACGGAGGCCATGATATAAAACTGACTCTCTTTAGATTCGCTAGTAACATCATTTTCTCTAATGGGCTCAGAGATCCTTATAGCAGTGGCGGGGTATTGCAAAATATATCAGACAGTCTTGTCGCAGTCTATACAAACAATGGGTCTCATTGCCTGGATATAGTTCCATCAAACCCTAGTACCGATCCAGACTGGTTGGTCAATCAGCGGAAAATGGAGGTCGAGATTATCAAAAAATGGATGACCGCGTACTATGCTGACCTTCAGACATTCAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

473

Amino Acids

52.43

Weight (kDa)

5.02

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	25 - 452	3.1e-77	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1259, 1337
AccB7I	CCANNNNNTGG	2 cut(s)	150, 575
AccII	CGCG	2 cut(s)	734, 1388
AciI	CCGC	5 cut(s)	566, 734, 1230, 1348, 1386
AclWI	GGATC	6 cut(s)	391, 788, 1009, 1061, 1208, 1319
AcuI	CTGAAG	2 cut(s)	79, 1388
AcyI	GRCGYC	1 cut(s)	1107
AfaI	GTAC	7 cut(s)	149, 293, 770, 937, 958, 1321, 1391
AfiI	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
AflIII	ACRYGT	1 cut(s)	406
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	7 cut(s)	91, 122, 263, 338, 364, 849, 1414
AjnI	CCWGG	1 cut(s)	1293
Alw21I	GWGCWC	3 cut(s)	175, 288, 523
Alw26I	GTCTC	3 cut(s)	614, 692, 1290
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	6 cut(s)	391, 788, 1009, 1061, 1208, 1319
AoxI	GGCC	2 cut(s)	880, 1147
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	779
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 1268, 1300
AsiGI	ACCGGT	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	197, 734
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	1 cut(s)	1024
BaeGI	GKGCMC	1 cut(s)	175
BaeI	ACNNNNGTAYC	2 cut(s)	1303, 1336
BanII	GRGCYC	2 cut(s)	523, 1209
Bbv12I	GWGCWC	3 cut(s)	175, 288, 523
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	5 cut(s)	677, 805, 830, 978, 1315
BciT130I	CCWGG	1 cut(s)	1295
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	2 cut(s)	82, 135
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	3 cut(s)	614, 692, 1290
BfaI	CTAG	6 cut(s)	321, 380, 524, 615, 1182, 1317
BfmI	CTRYAG	1 cut(s)	1078
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	2 cut(s)	735, 780
BlsI	GCNGC	2 cut(s)	736, 781
BmcAI	AGTACT	3 cut(s)	149, 937, 958
Bme1390I	CCNGG	2 cut(s)	1019, 1295
BmiI	GGNNCC	2 cut(s)	160, 537
BmrFI	CCNGG	2 cut(s)	1019, 1295
BmrI	ACTGGG	2 cut(s)	160, 924
BmsI	GCATC	5 cut(s)	31, 467, 652, 746, 913
BmuI	ACTGGG	2 cut(s)	160, 924
BpuEI	CTTGAG	1 cut(s)	748
BpuMI	CCSGG	1 cut(s)	1019
BsaHI	GRCGYC	1 cut(s)	1107
BsaI	GGTCTC	2 cut(s)	692, 1290
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	288, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	5 cut(s)	155, 235, 809, 930, 1337
Bse3DI	GCAATG	1 cut(s)	1288
BseBI	CCWGG	1 cut(s)	1295
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	3 cut(s)	737, 989, 1386
BseLI	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
BseMI	GCAATG	1 cut(s)	1288
BseMII	CTCAG	4 cut(s)	381, 384, 797, 1222
BseNI	ACTGG	5 cut(s)	155, 235, 809, 930, 1337
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	791
Bsh1236I	CGCG	2 cut(s)	734, 1388
BshFI	GGCC	2 cut(s)	882, 1149
BshTI	ACCGGT	1 cut(s)	288
BsiHKAI	GWGCWC	3 cut(s)	175, 288, 523
BsiSI	CCGG	3 cut(s)	289, 440, 1019
BslFI	GGGAC	2 cut(s)	708, 1094
BslI	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
BsmAI	GTCTC	3 cut(s)	614, 692, 1290
BsmFI	GGGAC	2 cut(s)	708, 1094
BsmI	GAATGC	2 cut(s)	430, 477
BsnI	GGCC	2 cut(s)	882, 1149
Bso31I	GGTCTC	2 cut(s)	692, 1290
Bsp1286I	GDGCHC	4 cut(s)	175, 288, 523, 1209
Bsp1407I	TGTACA	1 cut(s)	768
BspACI	CCGC	5 cut(s)	566, 734, 1230, 1348, 1386
BspANI	GGCC	2 cut(s)	882, 1149
BspCNI	CTCAG	4 cut(s)	380, 385, 796, 1221
BspFNI	CGCG	2 cut(s)	734, 1388
BspLI	GGNNCC	2 cut(s)	160, 537
BspPI	GGATC	6 cut(s)	391, 788, 1009, 1061, 1208, 1319
BspTNI	GGTCTC	2 cut(s)	692, 1290
BsrDI	GCAATG	1 cut(s)	1288
BsrFI	RCCGGY	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	768
BsrI	ACTGG	5 cut(s)	155, 235, 809, 930, 1337
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	1107
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	1295
Bst4CI	ACNGT	6 cut(s)	328, 645, 830, 1082, 1101, 1256
BstACI	GRCGYC	1 cut(s)	1107
BstAPI	GCANNNNNTGC	2 cut(s)	41, 389
BstAUI	TGTACA	1 cut(s)	768
BstC8I	GCNNGC	4 cut(s)	346, 477, 880, 996
BstDEI	CTNAG	5 cut(s)	367, 393, 698, 783, 1208
BstF5I	GGATG	3 cut(s)	737, 989, 1386
BstFNI	CGCG	2 cut(s)	734, 1388
BstHHI	GCGC	2 cut(s)	197, 734
BstMAI	GTCTC	3 cut(s)	614, 692, 1290
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 354, 389, 518, 533, 1394
BstNI	CCWGG	1 cut(s)	1295
BstNSI	RCATGY	2 cut(s)	410, 1002
BstSCI	CCNGG	2 cut(s)	1017, 1293
BstSFI	CTRYAG	1 cut(s)	1078
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	2 cut(s)	734, 1388
BstV1I	GCAGC	1 cut(s)	791
BstX2I	RGATCY	2 cut(s)	396, 1213
BstYI	RGATCY	2 cut(s)	396, 1213
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	882, 1149
BtsCI	GGATG	3 cut(s)	737, 989, 1386
BtsI	GCAGTG	1 cut(s)	1231
BtsIMutI	CAGTG	1 cut(s)	1231
Cac8I	GCNNGC	4 cut(s)	346, 477, 880, 996
CfoI	GCGC	2 cut(s)	197, 734
Cfr10I	RCCGGY	1 cut(s)	288
CseI	GACGC	2 cut(s)	424, 1096
Csp6I	GTAC	7 cut(s)	148, 292, 769, 936, 957, 1320, 1390
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	7 cut(s)	407, 483, 772, 909, 999, 1045, 1151
CviQI	GTAC	7 cut(s)	148, 292, 769, 936, 957, 1320, 1390
DdeI	CTNAG	5 cut(s)	367, 393, 698, 783, 1208
DrdI	GACNNNNNNGTC	2 cut(s)	1259, 1337
DseDI	GACNNNNNNGTC	2 cut(s)	1259, 1337
EciI	GGCGGA	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	523, 1209
Eco31I	GGTCTC	2 cut(s)	692, 1290
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	79, 1388
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	1293
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	946
EcoT38I	GRGCYC	2 cut(s)	523, 1209
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
FaqI	GGGAC	2 cut(s)	708, 1094
FatI	CATG	7 cut(s)	406, 482, 771, 908, 998, 1044, 1150
FauI	CCCGC	1 cut(s)	1223
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	2 cut(s)	82, 135
Fnu4HI	GCNGC	2 cut(s)	735, 780
FokI	GGATG	3 cut(s)	724, 996, 1393
FriOI	GRGCYC	2 cut(s)	523, 1209
Fsp4HI	GCNGC	2 cut(s)	735, 780
FspBI	CTAG	6 cut(s)	321, 380, 524, 615, 1182, 1317
GlaI	GCGC	2 cut(s)	196, 733
GluI	GCNGC	2 cut(s)	735, 780
HaeIII	GGCC	2 cut(s)	882, 1149
HapII	CCGG	3 cut(s)	289, 440, 1019
HgaI	GACGC	2 cut(s)	424, 1096
HhaI	GCGC	2 cut(s)	197, 734
Hin1I	GRCGYC	1 cut(s)	1107
Hin1II	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
Hin6I	GCGC	2 cut(s)	195, 732
HinP1I	GCGC	2 cut(s)	195, 732
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	4 cut(s)	302, 541, 1165, 1176
HpaII	CCGG	3 cut(s)	289, 440, 1019
HphI	GGTGA	1 cut(s)	1024
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	6 cut(s)	98, 540, 655, 1211, 1252, 1407
Hpy188III	TCNNGA	5 cut(s)	321, 595, 608, 1328, 1363
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	5 cut(s)	592, 769, 1065, 1122, 1412
HpyCH4III	ACNGT	6 cut(s)	328, 645, 830, 1082, 1101, 1256
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 354, 389, 518, 533, 1394
HpyF3I	CTNAG	5 cut(s)	367, 393, 698, 783, 1208
Hsp92I	GRCGYC	1 cut(s)	1107
Hsp92II	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
HspAI	GCGC	2 cut(s)	195, 732
Ksp22I	TGATCA	2 cut(s)	82, 135
LmnI	GCTCC	3 cut(s)	518, 541, 839
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	5 cut(s)	31, 467, 652, 746, 913
MaeI	CTAG	6 cut(s)	321, 380, 524, 615, 1182, 1317
MaeIII	GTNAC	4 cut(s)	592, 1082, 1129, 1184
MboII	GAAGA	2 cut(s)	837, 1050
MfeI	CAATTG	1 cut(s)	891
MflI	RGATCY	2 cut(s)	396, 1213
MhlI	GDGCHC	4 cut(s)	175, 288, 523, 1209
MluCI	AATT	4 cut(s)	139, 657, 891, 1123
MlyI	GAGTC	1 cut(s)	1159
MmeI	TCCRAC	1 cut(s)	1075
MnlI	CCTC	4 cut(s)	281, 410, 1139, 1351
Mph1103I	ATGCAT	1 cut(s)	946
MseI	TTAA	3 cut(s)	813, 918, 1420
MspA1I	CMGCKG	1 cut(s)	1348
MspI	CCGG	3 cut(s)	289, 440, 1019
MspR9I	CCNGG	2 cut(s)	1019, 1295
MunI	CAATTG	1 cut(s)	891
Mva1269I	GAATGC	2 cut(s)	430, 477
MvaI	CCWGG	1 cut(s)	1295
MvnI	CGCG	2 cut(s)	734, 1388
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 354, 389, 518, 533, 1394
NciI	CCSGG	1 cut(s)	1019
NdeI	CATATG	1 cut(s)	463
NlaIII	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
NlaIV	GGNNCC	2 cut(s)	160, 537
NmuCI	GTSAC	2 cut(s)	592, 1129
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	2 cut(s)	410, 1002
PciI	ACATGT	1 cut(s)	406
PctI	GAATGC	2 cut(s)	430, 477
PfeI	GAWTC	3 cut(s)	302, 541, 1176
PflMI	CCANNNNNTGG	2 cut(s)	150, 575
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	736, 781
PleI	GAGTC	1 cut(s)	1159
PpsI	GAGTC	1 cut(s)	1159
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	1293
PspGI	CCWGG	1 cut(s)	1293
PspN4I	GGNNCC	2 cut(s)	160, 537
PsuI	RGATCY	2 cut(s)	396, 1213
RsaI	GTAC	7 cut(s)	149, 293, 770, 937, 958, 1321, 1391
RsaNI	GTAC	7 cut(s)	148, 292, 769, 936, 957, 1320, 1390
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	813, 918, 1420
SatI	GCNGC	2 cut(s)	735, 780
ScaI	AGTACT	3 cut(s)	149, 937, 958
SchI	GAGTC	1 cut(s)	1159
ScrFI	CCNGG	2 cut(s)	1019, 1295
SduI	GDGCHC	4 cut(s)	175, 288, 523, 1209
SfaNI	GCATC	5 cut(s)	31, 467, 652, 746, 913
SfcI	CTRYAG	1 cut(s)	1078
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
Sse9I	AATT	4 cut(s)	139, 657, 891, 1123
SsiI	CCGC	5 cut(s)	566, 734, 1230, 1348, 1386
SspI	AATATT	3 cut(s)	166, 180, 873
SspMI	CTAG	6 cut(s)	321, 380, 524, 615, 1182, 1317
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	1017, 1293
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	6 cut(s)	328, 645, 830, 1082, 1101, 1256
TaqI	TCGA	5 cut(s)	7, 20, 607, 789, 1362
TasI	AATT	4 cut(s)	139, 657, 891, 1123
TatI	WGTACW	4 cut(s)	147, 768, 935, 956
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	3 cut(s)	302, 541, 1176
Tru1I	TTAA	3 cut(s)	813, 918, 1420
Tru9I	TTAA	3 cut(s)	813, 918, 1420
TscAI	CASTG	1 cut(s)	1231
TseFI	GTSAC	2 cut(s)	592, 1129
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	592, 1129
TspDTI	ATGAA	4 cut(s)	471, 519, 788, 984
TspGWI	ACGGA	2 cut(s)	312, 1158
TspRI	CASTG	1 cut(s)	1231
Van91I	CCANNNNNTGG	2 cut(s)	150, 575
VneI	GTGCAC	1 cut(s)	171
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	2 cut(s)	410, 1002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XspI	CTAG	6 cut(s)	321, 380, 524, 615, 1182, 1317
ZrmI	AGTACT	3 cut(s)	149, 937, 958
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.