Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007618

Physical Location & Seq

Genomic Coordinates Reverse (-)

14587110 .. 14595117

Gene Structure 8008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3936 bp

ATGGCCGCGTCGAACGGGAGCGAGTACTTCGAATTGGGAATCGAGGGGCCGAACGAGACGTTTGCTCGGCCGTCGAACGCCGAGTCGGTGGCGGAGGACGAGGAGGAGCTGATGTGGGCGGCCATCAAGCGGCTGCCGTCGCAGAAGCAGTCGAGCACCGCCATTCTCAAGTCCGACAAGTCGGAGACCATCGACGTCCGGAAACTCGATCGCCACAACCGCGAGCTCGTCGTCAGCAAAGCCCTCGCCACTAACGATCAGGACAACCACCGCCTCCTCTGCGCCATTAAAGAACGCCTCGACAGGATGACTTTGCTTTTAGGACCCCCAAGTTCTGGCAAATCCACTTTGCTCACGACTCTTGCAGGAAAACTGGACTCCAGCTTAAAGAAAAGTGGCAGCATTACCTACAATGGGCATAAGCTTGATGAGTTCTGCGTTCAAAGAACTGCTGCTTACATAAGCCAAACAGATAATCACATTGCAGAACTCACCGTGAGAGAAACCTTAGACTTTGCAGCTAGATGTCAAGGTGCAAGCGAAGGTTTTGCAGCGTACATGAAAAATCTGGTCAAGTTAGAGAAGGAAAAAAACATAAGGCCAGATCCAGTAATTGATGCATTCATGAAGGCATCATCTGTTGGTGGTAAAAAGCACAGTATTACAACAGATTATGTTCTCAAAGTGCTTGGTCTTGATGTTTGTTCAGAGACAATTGTTGGAAACGACATGTTAAGAGGGGTTTCTGGGGGACAAAGGAAAAGGGTTACTACAGGTGAAATGGCAGTTGGACCAAGAAAAACCCTGTTTATGGATGAAATATCTACTGGATTGGATAGTTCTACTACATACCAAATTGTAAAATGTATTGGGAATTTTGTTCATCACATGGAAGCTACAGTACTAATGGCTCTGCTTCAGCCTGCACCTGAGACATTTGAATTGTTTGATGATTTAGTGCTACTATCTGAAGGCTACGTGGTTTATCAAGGCCCTCGAGCAGAAGTGTTGGAGTTCTTCGAGTCATTAGGCTTCAAACTACCACCACGAAAGGGTGTTGCAGATTTTCTTCAAGAGGTAACGTCTAAAAAAGATCAAGCTCAGTACTGGGCTGATCGTTCGAAACCATACGCATACATTTCTGTTTCAGAAATTGCAGAAGCCTTTAAGAAGTCCAGGTTTGGAAGGTCTGTGGATGACACTCTCTCTGCTCCATATGATAAATCTAGCAGTCTTCCTGCGGCTTTGCCAAAAACTAAATATGCAACCTCAAAATGGGAGCTTTGTAAAGCATGCTTTTCACGAGAACTACTGTTGATCAGCAGGCATAGGTTTCTTTACACATTTAGGACCTGCCAGGTTGCATTTGTTGGGGCTGTGACATGTACAATGTTTTCTAGATTGAAATTACACCCGACAGATGAAATAAATGGCAACCTTTATCTTTCTTGCTTGTTCTTTGGGTTGGTGCACATGATGTTTAATGGGTTTTCCGAGCTACCTCTTATGATATCTCGGCTTCCAGTCTTTTACAAGCAAAGAGACAATCACTTTCATCCTGCATGGGCATGGTCTGTTGTTAGTTTGCTTCTGCGCATACCTTACTCTATTATCGAAGCTGTTGTATGGTCTTGCGTCGTATACTACTCGGTTGGATTTGCCCCTGGTGCTGGGAGATTTTTCCGTTTCATGTTTTTGCTGTTCTCTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACAATGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCACTAATTATTATATTTTCTTTTGGTGGATTCATCATTCCCAAAGATAGCATTAAGCCATGGTGGGAATGGGCCTTTTGGATATCACCACTATCATATGGACAACGTGCTCTTTCTGTCAATGAATTTACGGCTGTAAGGTGGATCAAGATATCTCCTCTAACTAACAGAACAATTGGGCAAAGTGTTCTCCAAGAACACAACTTACCAAACGGTGATTACTGGTATTGGATTGGAGTTGGTGCTCTGTTAGCTTATGCATTGCTTTTCAATTGCATAGTGACTCTGACCTTGATGTACCTAAATCCACTAAGGAAAAATCAGACAGTGCTTCCACTTGATGACACACAAGAGAGTCCTGCTGCAGATGGGGCTAAATATAAGACCGAGTCTATCCCAAAATCAACTGGAGATAACGGCCCAAGAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTAACTACTCTGTTGACATGCCAAAGGAAATGAAGTCACAAGGTATACCAGAATCGAAGTTGAAACTCTTGTCGGAGGTGAGTGGAGTATTCTCACCAGGTGTTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGAAGGAGATATCAAGATATCTGGTTACCCGAAAGAGCAACGTACTTTTGCAAGAATAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAACTTACAGTTGAAGAGTCTCTATGGTTTTCTTCTGCTCTTCGCCTTCCGAAGGAAGTCAGCACAGAGAAAAGACTTGAGTTTGTCGAAGAAGTAATGAAACTAGTAGAGCTTGATACTCTAAGGCATGCTTTGGTTGGTTTGCCAGGCAGTTCAGGCTTATCAACAGAGCAAAGAAAACGCTTAACAATTTCTGTTGAGCTTGTTGCCAACCCTTCAATTATCTTTATGGATGAACCCACATCTGGACTTGATGCAAGGGCAGCAGCCATTGTGATGAGGACTGTTCGTAATACAGTTGATACAGGAAGAACGGTGGTCTGCACTATACATCAACCAAGTATTGACATATTTGAGGCATTTGATGAGGAGATCAATGGAATCACTCCGATTCCAAGCGGGTACAATCCAGCAACCTGGATGCTGGAGGTGGAAGAGTCCATCAAGCAGTTTAGCAGTCCTCCAGCTGACTCAAAACCATTAGAGTTTGCTTCCACGTATTCACAAAACACATTGGCTCAATTTTGGACCTGCTTATGGAAACAAAATCTTGTGTATTGGAGAAGTCCACAATATAATGCCATGAGGTTAATCTTTACTATGCTTGCTGCATTGATATTCGGTTCAGCATTTTGGGATGTTGGTACAAAAAGGGACTCAATTCAATCATTGATGATGGTTATGGGAGCTCTTTATTCTGCTTGCCTGTTTCTTGGGGTCAATAACGCTTCTTCAGTTCAGCCAATTGTTTCAATTGAGAGGACAGTATTTTATCGAGAGAAAGCAGCTGGAATGTATTCTCCTTTCGCTTATGCAGCGGCCCAGGGCCTTATAGAGATCCCATACATTGCTGTACAGACAATAGTATACGGGGTGATCACATACTTCATGGTCAATTTTGAAAGGACAATCACAAAATTCTTGCTCTATATTCTGTTCATGTTCCTCACATTCACCTACTTCACCCTTTATGGCATGGCGGCTGTTGGTCTCACTCCCTCTCAACACCTGGCAGCTGTCATCTCTTCTGCATTTTACTCATTGTGGAATCTCCTCGCCGGTTTCCTCATCCCCAAACCAAACATCCCGCCATGGTGGATATGGTTTTACTACATCACCCCAGTTGCATGGACACTTAGAGGTATTATCACTTCCCAACTTGGTGATGTGGAGACCATTCTTGTCGGACCTGCGTTTAAGGGCACTGTGAAAGAATACTTGGAAGTTAGCCTTGGCTATGGCCCTGGAATGATTGGAGTTTCAGTAGCTGTGCTACTGGGTTTCAACAGGCCCAAGTCATCAGAAAGAGGCAAAAGTAATAGCATGAATGAATTGCTGGAACAACTCAAAGCTCAAGTGGCAGAGGGTCTTCAATCTGCCCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1311

Amino Acids

146.09

Weight (kDa)

7.96

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	102 - 273	1.7e-13	ABC transporter
ABC2_membrane_7	PF19055	307 - 357	4.3e-06	ABC-2 type transporter
ABC2_membrane	PF01061	428 - 640	1.6e-49	ABC-2 type transporter
PDR_assoc	PF08370	645 - 707	8.9e-23	Plant PDR ABC transporter associated
ABC_tran	PF00005	780 - 931	5.8e-20	ABC transporter
ABC2_membrane	PF01061	1023 - 1235	1.1e-57	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29940
fragaria_vesca	FvH4_3g38510
malus_domestica	MD03G1071100.v1.1 MD11G1075100.v1.1
prunus_persica	Prupe.6G057900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441011 RchiOBHm_Chr5g0069411
rosa_laevigata	RLG00000006130
rosa_multiflora	Rmu_sc0001630.1_g000022 Rmu_sc0002658.1_g000022
rosa_roxburghii	Rroxscaffold_1G00011550 Rroxscaffold_5G00381890
rosa_rugosa	Rorug04G0330000 Rorug04G0330000 Rorug04G0330100 Rorug05G0397400
rosa_samantha	Rh4AG381900 Rh4DG388300 Rh5AG454600 Rh5BG473400 Rh5CG495900 Rh5DG485400
rosa_wichuraiana	Rw4G032920 Rw5G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	198, 2424
Acc16I	TGCGCA	1 cut(s)	1595
Acc36I	ACCTGC	3 cut(s)	1361, 3086, 3745
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	3 cut(s)	1641, 2311, 3414
AccII	CGCG	2 cut(s)	8, 222
AccIII	TCCGGA	2 cut(s)	198, 1734
AclWI	GGATC	4 cut(s)	599, 1792, 1943, 3379
AcoI	YGGCCR	3 cut(s)	3, 68, 120
AcsI	RAATTY	3 cut(s)	874, 1916, 3464
AcuI	CTGAAG	3 cut(s)	902, 990, 3264
AcyI	GRCGYC	2 cut(s)	195, 2421
AdeI	CACNNNGTG	1 cut(s)	2366
AflIII	ACRYGT	2 cut(s)	729, 1382
AhlI	ACTAGT	1 cut(s)	2650
AjnI	CCWGG	9 cut(s)	1175, 1356, 1663, 2362, 2692, 2963, 3369, 3555, 3790
AjuI	GAANNNNNNNTTGG	6 cut(s)	771, 803, 3749, 3762, 3781, 3794
Alw21I	GWGCWC	7 cut(s)	158, 228, 1473, 1713, 1903, 2038, 3238
Alw26I	GTCTC	9 cut(s)	50, 179, 704, 926, 1536, 1733, 2571, 3542, 3713
Alw44I	GTGCAC	2 cut(s)	1469, 1709
AlwI	GGATC	4 cut(s)	599, 1792, 1943, 3379
AlwNI	CAGNNNCTG	1 cut(s)	3815
Ama87I	CYCGRG	1 cut(s)	996
Aor13HI	TCCGGA	2 cut(s)	198, 1734
ApaLI	GTGCAC	2 cut(s)	1469, 1709
ApoI	RAATTY	3 cut(s)	874, 1916, 3464
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	3343
AspLEI	GCGC	2 cut(s)	284, 1596
AsuII	TTCGAA	2 cut(s)	30, 1121
AvaI	CYCGRG	1 cut(s)	996
AvaII	GGWCC	5 cut(s)	323, 791, 1350, 3075, 3734
BaeGI	GKGCMC	3 cut(s)	1473, 1713, 3752
BanII	GRGCYC	2 cut(s)	228, 3238
BarI	GAAGNNNNNNTAC	4 cut(s)	885, 917, 3682, 3714
BauI	CACGAG	1 cut(s)	1302
BbsI	GAAGAC	2 cut(s)	1226, 3908
Bbv12I	GWGCWC	7 cut(s)	158, 228, 1473, 1713, 1903, 2038, 3238
BccI	CCATC	6 cut(s)	131, 197, 2153, 2410, 2996, 3217
BceAI	ACGGC	4 cut(s)	55, 121, 1938, 2224
BcgI	CGANNNNNNTGC	6 cut(s)	44, 78, 226, 260, 530, 564
BciT130I	CCWGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
BciVI	GTATCC	1 cut(s)	2441
BclI	TGATCA	2 cut(s)	1317, 3423
BcoDI	GTCTC	9 cut(s)	50, 179, 704, 926, 1536, 1733, 2571, 3542, 3713
BcuI	ACTAGT	1 cut(s)	2650
BfaI	CTAG	5 cut(s)	522, 1227, 1398, 2391, 2651
BfmI	CTRYAG	3 cut(s)	771, 897, 2154
BfuAI	ACCTGC	3 cut(s)	1361, 3086, 3745
BfuI	GTATCC	1 cut(s)	2441
BmcAI	AGTACT	3 cut(s)	26, 903, 1106
Bme1390I	CCNGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
Bme18I	GGWCC	5 cut(s)	323, 791, 1350, 3075, 3734
BmeT110I	CYCGRG	1 cut(s)	996
BmiI	GGNNCC	2 cut(s)	48, 325
BmrFI	CCNGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
BmrI	ACTGGG	3 cut(s)	1117, 3662, 3833
BmsI	GCATC	5 cut(s)	607, 641, 1754, 2791, 2958
BmuI	ACTGGG	3 cut(s)	1117, 3662, 3833
BpiI	GAAGAC	2 cut(s)	1226, 3908
BpmI	CTGGAG	4 cut(s)	364, 2220, 2993, 2994
Bpu14I	TTCGAA	2 cut(s)	30, 1121
BpuEI	CTTGAG	3 cut(s)	152, 2645, 3885
BsaAI	YACGTR	2 cut(s)	979, 3045
BsaHI	GRCGYC	2 cut(s)	195, 2421
BsaI	GGTCTC	4 cut(s)	179, 1733, 3542, 3713
BsaJI	CCNNGG	7 cut(s)	1663, 1850, 3369, 3370, 3638, 3778, 3790
BsaWI	WCCGGW	2 cut(s)	198, 1734
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 3795, 3825
Bse118I	RCCGGY	1 cut(s)	3605
Bse3DI	GCAATG	4 cut(s)	480, 1767, 2051, 3393
BseAI	TCCGGA	2 cut(s)	198, 1734
BseBI	CCWGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
BseDI	CCNNGG	7 cut(s)	1663, 1850, 3369, 3370, 3638, 3778, 3790
BseGI	GGATG	9 cut(s)	312, 820, 1201, 1555, 2785, 2973, 3190, 3615, 3630
BseMI	GCAATG	4 cut(s)	480, 1767, 2051, 3393
BseMII	CTCAG	2 cut(s)	921, 1115
BseRI	GAGGAG	7 cut(s)	116, 119, 266, 1938, 2535, 2930, 3590
BseSI	GKGCMC	3 cut(s)	1473, 1713, 3752
BseX3I	CGGCCG	1 cut(s)	68
BseYI	CCCAGC	2 cut(s)	1670, 3927
BsgI	GTGCAG	3 cut(s)	909, 1776, 2854
Bsh1236I	CGCG	2 cut(s)	8, 222
Bsh1285I	CGRYCG	2 cut(s)	71, 211
BsiEI	CGRYCG	2 cut(s)	71, 211
BsiHKAI	GWGCWC	7 cut(s)	158, 228, 1473, 1713, 1903, 2038, 3238
BsiHKCI	CYCGRG	1 cut(s)	996
BsiSI	CCGG	3 cut(s)	199, 1735, 3606
BslFI	GGGAC	2 cut(s)	765, 3215
BsmAI	GTCTC	9 cut(s)	50, 179, 704, 926, 1536, 1733, 2571, 3542, 3713
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	765, 3215
BsmI	GAATGC	1 cut(s)	620
Bso31I	GGTCTC	4 cut(s)	179, 1733, 3542, 3713
BsoBI	CYCGRG	1 cut(s)	996
Bsp119I	TTCGAA	2 cut(s)	30, 1121
Bsp1286I	GDGCHC	8 cut(s)	158, 228, 1473, 1713, 1903, 2038, 3238, 3752
Bsp13I	TCCGGA	2 cut(s)	198, 1734
Bsp1407I	TGTACA	2 cut(s)	1385, 3400
Bsp19I	CCATGG	2 cut(s)	1850, 3638
BspCNI	CTCAG	2 cut(s)	922, 1114
BspEI	TCCGGA	2 cut(s)	198, 1734
BspFNI	CGCG	2 cut(s)	8, 222
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	48, 325
BspMAI	CTGCAG	1 cut(s)	2158
BspMI	ACCTGC	3 cut(s)	1361, 3086, 3745
BspPI	GGATC	4 cut(s)	599, 1792, 1943, 3379
BspQI	GCTCTTC	1 cut(s)	2592
BspT104I	TTCGAA	2 cut(s)	30, 1121
BspTNI	GGTCTC	4 cut(s)	179, 1733, 3542, 3713
BsrDI	GCAATG	4 cut(s)	480, 1767, 2051, 3393
BsrFI	RCCGGY	1 cut(s)	3605
BsrGI	TGTACA	2 cut(s)	1385, 3400
BssAI	RCCGGY	1 cut(s)	3605
BssECI	CCNNGG	7 cut(s)	1663, 1850, 3369, 3370, 3638, 3778, 3790
BssNAI	GTATAC	3 cut(s)	1642, 2312, 3415
BssNI	GRCGYC	2 cut(s)	195, 2421
BssSI	CACGAG	1 cut(s)	1302
BssT1I	CCWWGG	3 cut(s)	1850, 3638, 3778
Bst1107I	GTATAC	3 cut(s)	1642, 2312, 3415
Bst2BI	CACGAG	1 cut(s)	1302
Bst2UI	CCWGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
Bst6I	CTCTTC	5 cut(s)	1736, 2556, 2592, 2976, 3577
BstACI	GRCGYC	2 cut(s)	195, 2421
BstAPI	GCANNNNNTGC	1 cut(s)	1751
BstAUI	TGTACA	2 cut(s)	1385, 3400
BstBAI	YACGTR	2 cut(s)	979, 3045
BstBI	TTCGAA	2 cut(s)	30, 1121
BstC8I	GCNNGC	8 cut(s)	224, 538, 924, 1294, 1325, 2676, 3153, 3250
BstDEI	CTNAG	6 cut(s)	508, 930, 1101, 2102, 2669, 3683
BstDSI	CCRYGG	2 cut(s)	1850, 3638
BstEII	GGTNACC	1 cut(s)	2477
BstENI	CCTNNNNNAGG	1 cut(s)	2597
BstF5I	GGATG	9 cut(s)	312, 820, 1201, 1555, 2785, 2973, 3190, 3615, 3630
BstFNI	CGCG	2 cut(s)	8, 222
BstHHI	GCGC	2 cut(s)	284, 1596
BstMAI	GTCTC	9 cut(s)	50, 179, 704, 926, 1536, 1733, 2571, 3542, 3713
BstMCI	CGRYCG	2 cut(s)	71, 211
BstNI	CCWGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
BstNSI	RCATGY	5 cut(s)	733, 1296, 1386, 2287, 2678
BstPI	GGTNACC	1 cut(s)	2477
BstSCI	CCNGG	9 cut(s)	1175, 1356, 1663, 2362, 2692, 2963, 3369, 3555, 3790
BstSFI	CTRYAG	3 cut(s)	771, 897, 2154
BstSLI	GKGCMC	3 cut(s)	1473, 1713, 3752
BstUI	CGCG	2 cut(s)	8, 222
BstV2I	GAAGAC	2 cut(s)	1226, 3908
BstX2I	RGATCY	2 cut(s)	604, 3384
BstXI	CCANNNNNNTGG	3 cut(s)	2416, 2964, 3675
BstYI	RGATCY	2 cut(s)	604, 3384
BstZ17I	GTATAC	3 cut(s)	1642, 2312, 3415
BstZI	CGGCCG	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	2441
BtgI	CCRYGG	2 cut(s)	1850, 3638
BtsCI	GGATG	9 cut(s)	312, 820, 1201, 1555, 2785, 2973, 3190, 3615, 3630
BtsIMutI	CAGTG	2 cut(s)	2124, 3750
BveI	ACCTGC	3 cut(s)	1361, 3086, 3745
Cac8I	GCNNGC	8 cut(s)	224, 538, 924, 1294, 1325, 2676, 3153, 3250
CaiI	CAGNNNCTG	1 cut(s)	3815
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	2 cut(s)	284, 1596
Cfr10I	RCCGGY	1 cut(s)	3605
CseI	GACGC	1 cut(s)	1624
CsiI	ACCWGGT	1 cut(s)	2362
DdeI	CTNAG	6 cut(s)	508, 930, 1101, 2102, 2669, 3683
DraIII	CACNNNGTG	1 cut(s)	2366
EaeI	YGGCCR	3 cut(s)	3, 68, 120
EagI	CGGCCG	1 cut(s)	68
Eam1104I	CTCTTC	5 cut(s)	1736, 2556, 2592, 2976, 3577
EarI	CTCTTC	5 cut(s)	1736, 2556, 2592, 2976, 3577
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	2 cut(s)	226, 3236
EclXI	CGGCCG	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	1850, 3638, 3778
Eco24I	GRGCYC	2 cut(s)	228, 3238
Eco31I	GGTCTC	4 cut(s)	179, 1733, 3542, 3713
Eco32I	GATATC	5 cut(s)	1512, 1875, 1944, 2464, 2472
Eco47I	GGWCC	5 cut(s)	323, 791, 1350, 3075, 3734
Eco52I	CGGCCG	1 cut(s)	68
Eco53kI	GAGCTC	2 cut(s)	226, 3236
Eco57I	CTGAAG	3 cut(s)	902, 990, 3264
Eco88I	CYCGRG	1 cut(s)	996
Eco91I	GGTNACC	1 cut(s)	2477
EcoICRI	GAGCTC	2 cut(s)	226, 3236
EcoNI	CCTNNNNNAGG	1 cut(s)	2597
EcoO109I	RGGNCCY	4 cut(s)	323, 992, 1350, 3373
EcoO65I	GGTNACC	1 cut(s)	2477
EcoRII	CCWGG	9 cut(s)	1175, 1356, 1663, 2362, 2692, 2963, 3369, 3555, 3790
EcoRV	GATATC	5 cut(s)	1512, 1875, 1944, 2464, 2472
EcoT14I	CCWWGG	3 cut(s)	1850, 3638, 3778
EcoT22I	ATGCAT	2 cut(s)	622, 2053
EcoT38I	GRGCYC	2 cut(s)	228, 3238
ErhI	CCWWGG	3 cut(s)	1850, 3638, 3778
Esp3I	CGTCTC	1 cut(s)	50
FalI	AAGNNNNNCTT	4 cut(s)	2662, 2694, 3762, 3794
FaqI	GGGAC	2 cut(s)	765, 3215
FauI	CCCGC	2 cut(s)	2939, 3642
FauNDI	CATATG	2 cut(s)	1216, 1888
FbaI	TGATCA	2 cut(s)	1317, 3423
FblI	GTMKAC	3 cut(s)	1641, 2311, 3414
FokI	GGATG	9 cut(s)	319, 827, 1208, 1542, 2792, 2980, 3197, 3602, 3617
FriOI	GRGCYC	2 cut(s)	228, 3238
FspBI	CTAG	5 cut(s)	522, 1227, 1398, 2391, 2651
FspI	TGCGCA	1 cut(s)	1595
GlaI	GCGC	2 cut(s)	283, 1595
GsaI	CCCAGC	2 cut(s)	1674, 3931
GsuI	CTGGAG	4 cut(s)	364, 2220, 2993, 2994
HapII	CCGG	3 cut(s)	199, 1735, 3606
HgaI	GACGC	1 cut(s)	1624
HhaI	GCGC	2 cut(s)	284, 1596
Hin1I	GRCGYC	2 cut(s)	195, 2421
Hin6I	GCGC	2 cut(s)	282, 1594
HinP1I	GCGC	2 cut(s)	282, 1594
HincII	GTYRAC	2 cut(s)	2269, 2281
HindII	GTYRAC	2 cut(s)	2269, 2281
HindIII	AAGCTT	1 cut(s)	422
HpaI	GTTAAC	1 cut(s)	2269
HpaII	CCGG	3 cut(s)	199, 1735, 3606
Hpy166II	GTNNAC	8 cut(s)	1471, 1642, 1711, 2269, 2281, 2312, 3116, 3415
Hpy8I	GTNNAC	8 cut(s)	1471, 1642, 1711, 2269, 2281, 2312, 3116, 3415
Hpy99I	CGWCG	6 cut(s)	13, 76, 142, 197, 233, 1640
HpyAV	CCTTC	9 cut(s)	536, 577, 622, 965, 1179, 2450, 2593, 2603, 2772
HpyCH4IV	ACGT	8 cut(s)	59, 195, 978, 1082, 1897, 2421, 2494, 3044
HpyF3I	CTNAG	6 cut(s)	508, 930, 1101, 2102, 2669, 3683
HpySE526I	ACGT	8 cut(s)	59, 195, 978, 1082, 1897, 2421, 2494, 3044
Hsp92I	GRCGYC	2 cut(s)	195, 2421
HspAI	GCGC	2 cut(s)	282, 1594
Kpn2I	TCCGGA	2 cut(s)	198, 1734
Ksp22I	TGATCA	2 cut(s)	1317, 3423
KspAI	GTTAAC	1 cut(s)	2269
LguI	GCTCTTC	1 cut(s)	2592
LmnI	GCTCC	6 cut(s)	18, 106, 1216, 1279, 2396, 3233
LweI	GCATC	5 cut(s)	607, 641, 1754, 2791, 2958
MabI	ACCWGGT	1 cut(s)	2362
MaeI	CTAG	5 cut(s)	522, 1227, 1398, 2391, 2651
MaeII	ACGT	8 cut(s)	59, 195, 978, 1082, 1897, 2421, 2494, 3044
MaeIII	GTNAC	6 cut(s)	766, 1078, 1378, 2071, 2301, 2477
MfeI	CAATTG	5 cut(s)	714, 1965, 2062, 3291, 3300
MflI	RGATCY	2 cut(s)	604, 3384
MhlI	GDGCHC	8 cut(s)	158, 228, 1473, 1713, 1903, 2038, 3238, 3752
MmeI	TCCRAC	8 cut(s)	162, 198, 700, 769, 990, 1633, 2319, 3712
Mph1103I	ATGCAT	2 cut(s)	622, 2053
MroI	TCCGGA	2 cut(s)	198, 1734
MroXI	GAANNNNTTC	1 cut(s)	3343
MslI	CAYNNNNRTG	3 cut(s)	1567, 2414, 2822
MspA1I	CMGCKG	5 cut(s)	1790, 3014, 3335, 3365, 3563
MspI	CCGG	3 cut(s)	199, 1735, 3606
MspR9I	CCNGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
MunI	CAATTG	5 cut(s)	714, 1965, 2062, 3291, 3300
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
MvnI	CGCG	2 cut(s)	8, 222
NcoI	CCATGG	2 cut(s)	1850, 3638
NdeI	CATATG	2 cut(s)	1216, 1888
NlaIV	GGNNCC	2 cut(s)	48, 325
NmeAIII	GCCGAG	3 cut(s)	46, 106, 1495
NmuCI	GTSAC	3 cut(s)	1378, 2071, 2301
NsbI	TGCGCA	1 cut(s)	1595
NsiI	ATGCAT	2 cut(s)	622, 2053
NspI	RCATGY	5 cut(s)	733, 1296, 1386, 2287, 2678
NspV	TTCGAA	2 cut(s)	30, 1121
PaeI	GCATGC	2 cut(s)	1296, 2678
PaeR7I	CTCGAG	1 cut(s)	996
PagI	TCATGA	1 cut(s)	624
PasI	CCCWGGG	1 cut(s)	3370
PciI	ACATGT	2 cut(s)	729, 1382
PciSI	GCTCTTC	1 cut(s)	2592
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	3343
PfeI	GAWTC	6 cut(s)	39, 1821, 2318, 2928, 2938, 3595
PflFI	GACNNNGTC	1 cut(s)	2179
PflMI	CCANNNNNTGG	1 cut(s)	335
Ple19I	CGATCG	1 cut(s)	211
Ppu21I	YACGTR	2 cut(s)	979, 3045
PpuMI	RGGWCCY	2 cut(s)	323, 1350
PscI	ACATGT	2 cut(s)	729, 1382
Psp124BI	GAGCTC	2 cut(s)	228, 3238
Psp5II	RGGWCCY	2 cut(s)	323, 1350
Psp6I	CCWGG	9 cut(s)	1175, 1356, 1663, 2362, 2692, 2963, 3369, 3555, 3790
PspEI	GGTNACC	1 cut(s)	2477
PspFI	CCCAGC	2 cut(s)	1670, 3927
PspGI	CCWGG	9 cut(s)	1175, 1356, 1663, 2362, 2692, 2963, 3369, 3555, 3790
PspN4I	GGNNCC	2 cut(s)	48, 325
PspPPI	RGGWCCY	2 cut(s)	323, 1350
PspXI	VCTCGAGB	1 cut(s)	996
PsrI	GAACNNNNNNTAC	2 cut(s)	1980, 2012
PstI	CTGCAG	1 cut(s)	2158
PstNI	CAGNNNCTG	1 cut(s)	3815
PsuI	RGATCY	2 cut(s)	604, 3384
PsyI	GACNNNGTC	1 cut(s)	2179
PvuI	CGATCG	1 cut(s)	211
PvuII	CAGCTG	4 cut(s)	1790, 3014, 3335, 3563
RseI	CAYNNNNRTG	3 cut(s)	1567, 2414, 2822
SacI	GAGCTC	2 cut(s)	228, 3238
SapI	GCTCTTC	1 cut(s)	2592
ScaI	AGTACT	3 cut(s)	26, 903, 1106
ScrFI	CCNGG	9 cut(s)	1177, 1358, 1665, 2364, 2694, 2965, 3371, 3557, 3792
SduI	GDGCHC	8 cut(s)	158, 228, 1473, 1713, 1903, 2038, 3238, 3752
SexAI	ACCWGGT	1 cut(s)	2362
SfaNI	GCATC	5 cut(s)	607, 641, 1754, 2791, 2958
SfcI	CTRYAG	3 cut(s)	771, 897, 2154
Sfr274I	CTCGAG	1 cut(s)	996
SfuI	TTCGAA	2 cut(s)	30, 1121
SinI	GGWCC	5 cut(s)	323, 791, 1350, 3075, 3734
SlaI	CTCGAG	1 cut(s)	996
SmiMI	CAYNNNNRTG	3 cut(s)	1567, 2414, 2822
SmlI	CTYRAG	4 cut(s)	167, 996, 2624, 3900
SmoI	CTYRAG	4 cut(s)	167, 996, 2624, 3900
SpeI	ACTAGT	1 cut(s)	2650
SphI	GCATGC	2 cut(s)	1296, 2678
SspMI	CTAG	5 cut(s)	522, 1227, 1398, 2391, 2651
SstI	GAGCTC	2 cut(s)	228, 3238
StyD4I	CCNGG	9 cut(s)	1175, 1356, 1663, 2362, 2692, 2963, 3369, 3555, 3790
StyI	CCWWGG	3 cut(s)	1850, 3638, 3778
TaiI	ACGT	8 cut(s)	62, 198, 981, 1085, 1900, 2424, 2497, 3047
TaqII	GACCGA	1 cut(s)	2192
TatI	WGTACW	5 cut(s)	24, 901, 1104, 1385, 3400
TauI	GCSGC	6 cut(s)	8, 122, 133, 1244, 3368, 3530
TfiI	GAWTC	6 cut(s)	39, 1821, 2318, 2928, 2938, 3595
TscAI	CASTG	2 cut(s)	2124, 3757
TseFI	GTSAC	3 cut(s)	1378, 2071, 2301
Tsp45I	GTSAC	3 cut(s)	1378, 2071, 2301
TspGWI	ACGGA	1 cut(s)	1673
TspRI	CASTG	2 cut(s)	2124, 3757
Tth111I	GACNNNGTC	1 cut(s)	2179
Van91I	CCANNNNNTGG	1 cut(s)	335
VneI	GTGCAC	2 cut(s)	1469, 1709
VpaK11BI	GGWCC	5 cut(s)	323, 791, 1350, 3075, 3734
XagI	CCTNNNNNAGG	1 cut(s)	2597
XapI	RAATTY	3 cut(s)	874, 1916, 3464
XbaI	TCTAGA	1 cut(s)	1397
XceI	RCATGY	5 cut(s)	733, 1296, 1386, 2287, 2678
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1857, 3645
XhoI	CTCGAG	1 cut(s)	996
XmiI	GTMKAC	3 cut(s)	1641, 2311, 3414
XmnI	GAANNNNTTC	1 cut(s)	3343
XspI	CTAG	5 cut(s)	522, 1227, 1398, 2391, 2651
ZraI	GACGTC	2 cut(s)	196, 2422
ZrmI	AGTACT	3 cut(s)	26, 903, 1106
Zsp2I	ATGCAT	2 cut(s)	622, 2053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.