Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Forward (+)

37724204 .. 37726354

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45501.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAAGAGAAGAAAGTGGAGATTGAGGAGTTGAAACCCTTAAGGATGAGTAGTACTCCTCCTCCTCCTCCTTCAGTGCTCAAGCCATTTGTAGATGGCGGACTCGCCGGGCTTCTTTCCTGCGGTGTCAATGGGGCCATCGATTACTCAAGGTCCATTTCTAACGACGCTCGATATCGAAATCATCCTAACTACGTGCTCAAACGCAAGATGATTCCTGGGTTGGTTTTGATTGATGCTTTTGCTTTTAGTCAGCTACTTGGATATTACAACATTGTGAGAGGAATAGCAGTTGCTAGAAATGATGGCGCACGGCCAAGTCTTTACCAGGAAGCTTCTAGTGGTTTGATTGCTGGAGTAGCTACAGCGTATCTCAGAATTCCATTCGAGGTAATTTGTCTACATAGGCAGGTTAAATCCATGGGACCAATTGCACAGTGGAGTATCAGAAAACTTAGTGTGTTGCAAATATTGAGAGCTGGAGGTCCTTTGTTGAAGAGAAATGCTGGGTTAGGCATGGGTATGGTTGCAGCCTATAATCCAAGTGTCCATTATCTCATTGAAACTCATGGTTTTAGTGAACAGGCTGCAAAATGTGGTGCAGAAGCTATCTCAGCATTCTCAGCAGCAGCTTGCGCACAACTGGCACACCATGCTAGCTCCTTCAATTCTGTGCGTCAAACTCTAAACTCAAAAGGACCCCTTGCATTCTTTGAAGGATTCTCTGGTCTTTTTTCCCGAACCCTACCAACGGTTGTGCTATTCTGGGCTTCTTTAGATGTTGTCCGGGGAAATTTCCAACCACCAACTGAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

273

Amino Acids

29.39

Weight (kDa)

9.51

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	2 cut(s)	99, 123
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	378, 793
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflII	CTTAAG	1 cut(s)	40
AgsI	TTSAA	5 cut(s)	34, 496, 563, 667, 716
AjnI	CCWGG	2 cut(s)	217, 327
AluBI	AGCT	7 cut(s)	256, 335, 362, 479, 608, 632, 660
AluI	AGCT	7 cut(s)	256, 335, 362, 479, 608, 632, 660
Alw21I	GWGCWC	2 cut(s)	81, 201
AoxI	GGCC	2 cut(s)	135, 314
ApeKI	GCWGC	4 cut(s)	530, 587, 626, 629
ApoI	RAATTY	2 cut(s)	378, 793
AspLEI	GCGC	2 cut(s)	311, 638
AspS9I	GGNCC	5 cut(s)	135, 153, 425, 485, 698
AsuC2I	CCSGG	2 cut(s)	109, 788
AsuNHI	GCTAGC	1 cut(s)	656
AvaII	GGWCC	4 cut(s)	153, 425, 485, 698
Bbv12I	GWGCWC	2 cut(s)	81, 201
BbvI	GCAGC	4 cut(s)	542, 574, 638, 641
BccI	CCATC	3 cut(s)	89, 146, 299
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	2 cut(s)	219, 329
BcnI	CCSGG	2 cut(s)	109, 788
BfaI	CTAG	3 cut(s)	297, 339, 657
BfmI	CTRYAG	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	4 cut(s)	531, 588, 627, 630
BlsI	GCNGC	4 cut(s)	532, 589, 628, 631
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	109, 219, 329, 788
Bme18I	GGWCC	4 cut(s)	153, 425, 485, 698
BmgT120I	GGNCC	5 cut(s)	135, 153, 425, 485, 698
BmiI	GGNNCC	3 cut(s)	136, 426, 700
BmrFI	CCNGG	4 cut(s)	109, 219, 329, 788
BmsI	GCATC	1 cut(s)	226
BmtI	GCTAGC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	40, 72
BpmI	CTGGAG	2 cut(s)	375, 501
BpuEI	CTTGAG	2 cut(s)	65, 133
BpuMI	CCSGG	2 cut(s)	109, 788
Bsa29I	ATCGAT	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	218, 420, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	219, 329
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	218, 420, 787
BseGI	GGATG	2 cut(s)	51, 184
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMII	CTCAG	3 cut(s)	388, 627, 636
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	5 cut(s)	41, 48, 51, 54, 57
BseXI	GCAGC	4 cut(s)	542, 574, 638, 641
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	137, 316
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	81, 201
BsiSI	CCGG	2 cut(s)	108, 787
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	2 cut(s)	617, 707
BsnI	GGCC	2 cut(s)	137, 316
Bsp1286I	GDGCHC	2 cut(s)	81, 201
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	2 cut(s)	99, 123
BspANI	GGCC	2 cut(s)	137, 316
BspCNI	CTCAG	3 cut(s)	387, 626, 635
BspDI	ATCGAT	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	136, 426, 700
BspMI	ACCTGC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	3 cut(s)	218, 420, 787
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	219, 329
Bst4CI	ACNGT	2 cut(s)	438, 754
Bst6I	CTCTTC	1 cut(s)	491
BstAFI	CTTAAG	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	634, 658
BstDEI	CTNAG	4 cut(s)	374, 455, 613, 622
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	51, 184
BstHHI	GCGC	2 cut(s)	311, 638
BstMWI	GCNNNNNNNGC	6 cut(s)	359, 614, 623, 635, 644, 653
BstNI	CCWGG	2 cut(s)	219, 329
BstSCI	CCNGG	4 cut(s)	107, 217, 327, 786
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	4 cut(s)	542, 574, 638, 641
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	137, 316
BsuTUI	ATCGAT	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	51, 184
BtsIMutI	CAGTG	2 cut(s)	81, 443
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	634, 658
CfoI	GCGC	2 cut(s)	311, 638
Cfr13I	GGNCC	5 cut(s)	135, 153, 425, 485, 698
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	2 cut(s)	176, 665
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	4 cut(s)	421, 517, 569, 653
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	4 cut(s)	374, 455, 613, 622
EaeI	YGGCCR	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	176
Eco47I	GGWCC	4 cut(s)	153, 425, 485, 698
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	485, 698
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	217, 327
EcoRV	GATATC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	424, 520, 572, 656
FaiI	YATR	8 cut(s)	405, 422, 518, 524, 537, 570, 654, 817
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	4 cut(s)	420, 516, 568, 652
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	531, 588, 627, 630
FokI	GGATG	2 cut(s)	58, 171
Fsp4HI	GCNGC	4 cut(s)	531, 588, 627, 630
FspBI	CTAG	3 cut(s)	297, 339, 657
FspI	TGCGCA	1 cut(s)	637
GlaI	GCGC	2 cut(s)	310, 637
GluI	GCNGC	4 cut(s)	531, 588, 627, 630
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	2 cut(s)	375, 501
HaeIII	GGCC	2 cut(s)	137, 316
HapII	CCGG	2 cut(s)	108, 787
HgaI	GACGC	2 cut(s)	176, 665
HhaI	GCGC	2 cut(s)	311, 638
Hin1II	CATG	4 cut(s)	424, 520, 572, 656
Hin6I	GCGC	2 cut(s)	309, 636
HinP1I	GCGC	2 cut(s)	309, 636
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	3 cut(s)	102, 214, 720
HpaII	CCGG	2 cut(s)	108, 787
Hpy166II	GTNNAC	2 cut(s)	401, 581
Hpy188I	TCNGA	2 cut(s)	377, 449
Hpy188III	TCNNGA	1 cut(s)	738
Hpy8I	GTNNAC	2 cut(s)	401, 581
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	81, 673, 710
HpyCH4III	ACNGT	2 cut(s)	438, 754
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	434, 466, 530, 590, 602, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	359, 614, 623, 635, 644, 653
HpyF3I	CTNAG	4 cut(s)	374, 455, 613, 622
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	424, 520, 572, 656
HspAI	GCGC	2 cut(s)	309, 636
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	4 cut(s)	542, 574, 638, 641
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	297, 339, 657
MaeII	ACGT	1 cut(s)	195
MboII	GAAGA	3 cut(s)	17, 22, 508
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	81, 201
MluCI	AATT	5 cut(s)	378, 393, 429, 667, 793
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	19, 69, 72, 75, 78, 275, 382, 476
MseI	TTAA	2 cut(s)	41, 414
MslI	CAYNNNNRTG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	40
MspI	CCGG	2 cut(s)	108, 787
MspR9I	CCNGG	4 cut(s)	109, 219, 329, 788
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	617, 707
MvaI	CCWGG	2 cut(s)	219, 329
MwoI	GCNNNNNNNGC	6 cut(s)	359, 614, 623, 635, 644, 653
NciI	CCSGG	2 cut(s)	109, 788
NcoI	CCATGG	1 cut(s)	420
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	4 cut(s)	424, 520, 572, 656
NlaIV	GGNNCC	3 cut(s)	136, 426, 700
NsbI	TGCGCA	1 cut(s)	637
PctI	GAATGC	2 cut(s)	617, 707
PfeI	GAWTC	2 cut(s)	214, 720
PkrI	GCNGC	4 cut(s)	532, 589, 628, 631
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	2 cut(s)	485, 698
Psp5II	RGGWCCY	2 cut(s)	485, 698
Psp6I	CCWGG	2 cut(s)	217, 327
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	217, 327
PspN4I	GGNNCC	3 cut(s)	136, 426, 700
PspPI	GGNCC	5 cut(s)	135, 153, 425, 485, 698
PspPPI	RGGWCCY	2 cut(s)	485, 698
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	41, 414
SatI	GCNGC	4 cut(s)	531, 588, 627, 630
Sau96I	GGNCC	5 cut(s)	135, 153, 425, 485, 698
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	4 cut(s)	109, 219, 329, 788
SduI	GDGCHC	2 cut(s)	81, 201
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	4 cut(s)	153, 425, 485, 698
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	40, 80, 148
SmoI	CTYRAG	3 cut(s)	40, 80, 148
Sse9I	AATT	5 cut(s)	378, 393, 429, 667, 793
SsiI	CCGC	2 cut(s)	99, 123
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	3 cut(s)	297, 339, 657
StyD4I	CCNGG	4 cut(s)	107, 217, 327, 786
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	438, 754
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	141, 172, 178, 387
TasI	AATT	5 cut(s)	378, 393, 429, 667, 793
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	214, 720
Tru1I	TTAA	2 cut(s)	41, 414
Tru9I	TTAA	2 cut(s)	41, 414
TscAI	CASTG	2 cut(s)	81, 443
TseI	GCWGC	4 cut(s)	530, 587, 626, 629
TspRI	CASTG	2 cut(s)	81, 443
Vha464I	CTTAAG	1 cut(s)	40
VpaK11BI	GGWCC	4 cut(s)	153, 425, 485, 698
XapI	RAATTY	2 cut(s)	378, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	3 cut(s)	297, 339, 657
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.