Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

74053733 .. 74056192

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGATGATTCCTGTTATGGTTTTGGTTGATGCTTTTGCTTTTGGTCAGATACTTGGATTCTACAACCTTCTGAGAGGAAAAGTAGTTGCTAGAAATGATGGTATGCGACCAAATCTTTATCAGGAAGCTGCTACTGGTTTAATTGCTGGAGCAGCTGGGGCGTATCTCAGCTTGCCATTTGCTGTAGCTTGTCAACATAAGCAGGTAGAATCCATGGGACCAATTGCAGAGCGTTGGAGAATCAGAAGTAAAAGTGTGTTACATATATTGAGATATGGAGGCCCTTGGTTGAAGAGAAGAGCTGGGTTAGGCATGGTTTCTCCTGGACAACTTGGCTCAATTACTGATGATGATGGGTGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

122

Amino Acids

13.2

Weight (kDa)

9.62

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	5 cut(s)	131, 158, 174, 191, 305
AluI	AGCT	5 cut(s)	131, 158, 174, 191, 305
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	131, 155
AspS9I	GGNCC	2 cut(s)	221, 284
AvaII	GGWCC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	118, 167
BccI	CCATC	2 cut(s)	95, 350
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	132, 156
BlsI	GCNGC	2 cut(s)	133, 157
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 284
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	216, 287
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	216, 287
BseGI	GGATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	65, 184
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	118, 167
BseYI	CCCAGC	2 cut(s)	158, 305
BshFI	GGCC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	216
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	66, 183
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	216, 287
BssT1I	CCWWGG	2 cut(s)	216, 287
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	2 cut(s)	290, 295
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	74, 170
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 161
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	118, 167
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	221, 284
CviAII	CATG	2 cut(s)	217, 316
CviJI	RGCY	7 cut(s)	131, 158, 174, 191, 285, 305, 339
CviKI_1	RGCY	7 cut(s)	131, 158, 174, 191, 285, 305, 339
DdeI	CTNAG	2 cut(s)	74, 170
Eam1104I	CTCTTC	2 cut(s)	290, 295
EarI	CTCTTC	2 cut(s)	290, 295
Eco130I	CCWWGG	2 cut(s)	216, 287
Eco47I	GGWCC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	216, 287
ErhI	CCWWGG	2 cut(s)	216, 287
FaeI	CATG	2 cut(s)	220, 319
FaiI	YATR	8 cut(s)	20, 107, 201, 218, 267, 269, 279, 317
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	216, 315
Fnu4HI	GCNGC	2 cut(s)	132, 156
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	132, 156
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	132, 156
GsaI	CCCAGC	2 cut(s)	162, 309
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	220, 319
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HinfI	GANTC	4 cut(s)	10, 60, 212, 243
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	51, 75, 248
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 161
HpyF3I	CTNAG	2 cut(s)	74, 170
Hsp92II	CATG	2 cut(s)	220, 319
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	9 cut(s)	27, 110, 123, 135, 144, 191, 291, 312, 339
Lsp1109I	GCAGC	2 cut(s)	118, 167
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	261, 362
MboII	GAAGA	2 cut(s)	307, 312
MfeI	CAATTG	1 cut(s)	225
MluCI	AATT	3 cut(s)	144, 225, 342
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	2 cut(s)	71, 275
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	155, 161
NcoI	CCATGG	1 cut(s)	216
NlaIII	CATG	2 cut(s)	220, 319
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	295
PfeI	GAWTC	4 cut(s)	10, 60, 212, 243
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	133, 157
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	2 cut(s)	158, 305
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	221, 284
PvuII	CAGCTG	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	132, 156
Sau96I	GGNCC	2 cut(s)	221, 284
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	7 cut(s)	72, 133, 160, 176, 193, 210, 307
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	3 cut(s)	144, 225, 342
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	216, 287
TasI	AATT	3 cut(s)	144, 225, 342
TfiI	GAWTC	4 cut(s)	10, 60, 212, 243
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	131, 155
Tsp45I	GTSAC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	221
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.