Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

89478118 .. 89479593

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG521900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGGATGATTCCTGGTATGGTTTTGGTTGATGATTTTGGTCAGATACTTGGATTCTACAACCTTCTGAGAGGAAAAGTAGTTGCTAGAAATGATGGTATGCGACCAACTCTTTATCAAGAAGCTGCTACTGGTTTAATTGCTGGAGCAGCTGGAGTGTATCTCAGCTTTCCATTTGCTGTAGCTTGTCAACATGAGCAGGTTGAATCCATGGGACCAATTGCAGAGTGCTGGAGAATCGTGCAAGGGCTATTTCAGCATTCTGTGCCGCTGCTTGCGCTGAACTGGCACAACAAGCTAGCTCCTTCAATTCTGCGCGTCAAACTCAAAACAAAAGGACCCGTTGCATTCTGTGATTCAACTGAGTTTGAAGAGTCGGTTGCACAAGTAAGCTATATTGCTTTCCTTAGCATTGGATGTTGGACCTATGATAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

146

Amino Acids

16.03

Weight (kDa)

5.85

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccII	CGCG	1 cut(s)	318
AciI	CCGC	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	206, 309, 360, 371
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	125, 152, 168, 185, 298, 302, 393
AluI	AGCT	7 cut(s)	125, 152, 168, 185, 298, 302, 393
ApeKI	GCWGC	3 cut(s)	125, 149, 271
AspLEI	GCGC	2 cut(s)	280, 318
AspS9I	GGNCC	3 cut(s)	215, 338, 423
AsuNHI	GCTAGC	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	215, 338, 423
BbvI	GCAGC	3 cut(s)	112, 161, 258
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	2 cut(s)	87, 299
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	4 cut(s)	126, 150, 269, 272
BlsI	GCNGC	4 cut(s)	127, 151, 270, 273
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	3 cut(s)	215, 338, 423
BmgT120I	GGNCC	3 cut(s)	215, 338, 423
BmiI	GGNNCC	2 cut(s)	216, 340
BmrFI	CCNGG	1 cut(s)	15
BmtI	GCTAGC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	3 cut(s)	165, 174, 253
Bpu10I	CCTNAGC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	136, 290, 436
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	12, 422
BseMII	CTCAG	3 cut(s)	59, 178, 354
BseNI	ACTGG	3 cut(s)	136, 290, 436
BseXI	GCAGC	3 cut(s)	112, 161, 258
Bsh1236I	CGCG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	2 cut(s)	259, 347
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	60, 177, 355
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	216, 340
BspMI	ACCTGC	1 cut(s)	190
BspOI	GCTAGC	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	136, 290, 436
BssECI	CCNNGG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	276, 300
BstDEI	CTNAG	4 cut(s)	68, 164, 363, 407
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	12, 422
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	280, 318
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 256, 265, 277, 286, 295
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	112, 161, 258
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	12, 422
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	276, 300
CfoI	GCGC	2 cut(s)	280, 318
Cfr13I	GGNCC	3 cut(s)	215, 338, 423
CseI	GACGC	1 cut(s)	307
CviAII	CATG	2 cut(s)	194, 211
CviJI	RGCY	9 cut(s)	125, 152, 168, 185, 250, 298, 302, 393, 435
CviKI_1	RGCY	9 cut(s)	125, 152, 168, 185, 250, 298, 302, 393, 435
DdeI	CTNAG	4 cut(s)	68, 164, 363, 407
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	3 cut(s)	215, 338, 423
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	197, 214
FaiI	YATR	6 cut(s)	20, 101, 195, 212, 396, 429
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	2 cut(s)	193, 210
Fnu4HI	GCNGC	4 cut(s)	126, 150, 269, 272
FokI	GGATG	2 cut(s)	19, 429
Fsp4HI	GCNGC	4 cut(s)	126, 150, 269, 272
FspBI	CTAG	2 cut(s)	87, 299
GlaI	GCGC	2 cut(s)	279, 317
GluI	GCNGC	4 cut(s)	126, 150, 269, 272
GsuI	CTGGAG	3 cut(s)	165, 174, 253
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	2 cut(s)	280, 318
Hin1II	CATG	2 cut(s)	197, 214
Hin6I	GCGC	2 cut(s)	278, 316
HinP1I	GCGC	2 cut(s)	278, 316
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	6 cut(s)	10, 54, 206, 237, 356, 374
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	45, 69
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	74, 315
HpyCH4V	TGCA	4 cut(s)	224, 244, 347, 383
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 256, 265, 277, 286, 295
HpyF3I	CTNAG	4 cut(s)	68, 164, 363, 407
Hsp92II	CATG	2 cut(s)	197, 214
HspAI	GCGC	2 cut(s)	278, 316
LmnI	GCTCC	2 cut(s)	146, 307
LpnPI	CCDG	7 cut(s)	27, 117, 129, 138, 185, 217, 271
Lsp1109I	GCAGC	3 cut(s)	112, 161, 258
MaeI	CTAG	2 cut(s)	87, 299
MboII	GAAGA	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	3 cut(s)	138, 219, 309
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	1 cut(s)	65
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	2 cut(s)	152, 271
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	2 cut(s)	259, 347
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	6 cut(s)	149, 256, 265, 277, 286, 295
NcoI	CCATGG	1 cut(s)	210
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	197, 214
NlaIV	GGNNCC	2 cut(s)	216, 340
PctI	GAATGC	2 cut(s)	259, 347
PfeI	GAWTC	5 cut(s)	10, 54, 206, 237, 356
PkrI	GCNGC	4 cut(s)	127, 151, 270, 273
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	216, 340
PspPI	GGNCC	3 cut(s)	215, 338, 423
PspPPI	RGGWCCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	4 cut(s)	126, 150, 269, 272
Sau96I	GGNCC	3 cut(s)	215, 338, 423
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	3 cut(s)	215, 338, 423
Sse9I	AATT	3 cut(s)	138, 219, 309
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	87, 299
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	210
TasI	AATT	3 cut(s)	138, 219, 309
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	5 cut(s)	10, 54, 206, 237, 356
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	3 cut(s)	125, 149, 271
VpaK11BI	GGWCC	3 cut(s)	215, 338, 423
XspI	CTAG	2 cut(s)	87, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.