Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004031.1

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

43691 .. 45196

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004031.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgggcgcctctcgaaaatgtcatccatcaatagctgatgttttggtttgtcctccatcagtagctgatgttttgggtcgtcctcgatcagcagcttttcgtgctccaccaccagttccttctcggatggacaatgggcttccaccatcaggtccttgttggatggacaaagaagctgcatgtgatccaccaccaggtccttgttggatggacaaacaagctgcattatctcctccttggtggacaaggctcctccaccaccagtttccccttcatttttctttgtttgcatctgaactgttattgatacttattatcttttcgttttcttttaaagaaagaaaactcgcgggaagtttagctgaatcagctcggcagtggaagtatgatgtgtttttgagttttagggggggagacactcgcaggagttttgtatcccatttataccatgaattggaaaactcaggagaaattagaacattcaaggatgatgaacaccttgagataggggaggatatttctcaaagtctgctgatggcaattgaagaatcaaggtctgcgatcattgttctgtcgaaaaactatgctttttctgcttggtgtttagatgaacttacaaagatttgtcaatgcatgaaaggcaaaaagagaattttgccaatttttttttatgtggatccctctgttgtgcgatatcaaaaggatacttttggagcggccttagaaaagcatgcaaggagtggaaggtatgacatagtgaaggtgaatcagtggagagctgatttaacaaaagtgggaagtatctctgggtggcattcaaatgactataaaactgaaagggacctcattgaagacattcagaaatatgtgctcaaaacagttgatagactagaaaagtgggattgtgacttcgaacagaatactgcaaagatttctggtagtaattctggaaattcgtttgagcgaagtgcatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

FH2 PTEN_C2

Protein Analysis

325

Amino Acids

36.94

Weight (kDa)

7.58

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	716
AccII	CGCG	1 cut(s)	350
AciI	CCGC	2 cut(s)	350, 716
AclWI	GGATC	3 cut(s)	179, 671, 684
AcsI	RAATTY	2 cut(s)	651, 952
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	3 cut(s)	149, 194, 454
AgsI	TTSAA	4 cut(s)	484, 545, 819, 851
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	8 cut(s)	35, 65, 95, 176, 221, 362, 371, 779
AluI	AGCT	8 cut(s)	35, 65, 95, 176, 221, 362, 371, 779
Alw21I	GWGCWC	2 cut(s)	106, 873
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	3 cut(s)	179, 671, 684
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	92, 176, 221
ApoI	RAATTY	2 cut(s)	651, 952
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	152, 197, 841
AsuHPI	GGTGA	1 cut(s)	775
AsuII	TTCGAA	1 cut(s)	912
AvaII	GGWCC	3 cut(s)	152, 197, 841
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	106, 873
BbvI	GCAGC	3 cut(s)	104, 163, 208
BccI	CCATC	7 cut(s)	34, 64, 121, 154, 157, 202, 529
BciT130I	CCWGG	1 cut(s)	195
BciVI	GTATCC	2 cut(s)	445, 697
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	890
BfoI	RGCGCY	1 cut(s)	9
BfuI	GTATCC	2 cut(s)	445, 697
BisI	GCNGC	4 cut(s)	93, 177, 222, 717
BlsI	GCNGC	4 cut(s)	94, 178, 223, 718
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	3 cut(s)	152, 197, 841
BmgT120I	GGNCC	3 cut(s)	152, 197, 841
BmiI	GGNNCC	4 cut(s)	7, 251, 678, 842
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 194, 454
Bse1I	ACTGG	2 cut(s)	113, 262
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	5 cut(s)	22, 132, 168, 213, 493
BseLI	CCNNNNNNNGG	3 cut(s)	149, 194, 454
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	113, 262
BseRI	GAGGAG	2 cut(s)	222, 242
BseXI	GCAGC	3 cut(s)	104, 163, 208
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	719
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	106, 873
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	149, 194, 454
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	912
Bsp1286I	GDGCHC	2 cut(s)	106, 873
Bsp143I	GATC	4 cut(s)	86, 184, 561, 676
BspACI	CCGC	2 cut(s)	350, 716
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	4 cut(s)	7, 251, 678, 842
BspPI	GGATC	3 cut(s)	179, 671, 684
BspT104I	TTCGAA	1 cut(s)	912
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	113, 262
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	4 cut(s)	86, 184, 561, 676
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	300, 880
BstACI	GRCGYC	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	912
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	2 cut(s)	463, 721
BstF5I	GGATG	5 cut(s)	22, 132, 168, 213, 493
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	89, 187, 564, 679
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	86, 184, 561, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 368, 593, 639
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	2 cut(s)	183, 734
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	104, 163, 208
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuI	GTATCC	2 cut(s)	445, 697
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	5 cut(s)	22, 132, 168, 213, 493
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	383, 776
Cac8I	GCNNGC	1 cut(s)	732
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	152, 197, 841
CsiI	ACCWGGT	1 cut(s)	193
CviAII	CATG	4 cut(s)	180, 449, 634, 731
DdeI	CTNAG	2 cut(s)	463, 721
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	4 cut(s)	88, 186, 563, 678
DpnII	GATC	4 cut(s)	86, 184, 561, 676
DraI	TTTAAA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	695
Eco47I	GGWCC	3 cut(s)	152, 197, 841
EcoO109I	RGGNCCY	3 cut(s)	152, 197, 841
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	635
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	4 cut(s)	183, 452, 637, 734
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	4 cut(s)	179, 448, 633, 730
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	4 cut(s)	93, 177, 222, 717
FokI	GGATG	5 cut(s)	9, 139, 175, 220, 500
Fsp4HI	GCNGC	4 cut(s)	93, 177, 222, 717
FspBI	CTAG	1 cut(s)	890
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	4 cut(s)	93, 177, 222, 717
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	719
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	183, 452, 637, 734
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	365, 548, 766
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	126, 295, 861
Hpy188III	TCNNGA	3 cut(s)	12, 465, 948
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	4 cut(s)	129, 281, 738, 754
HpyCH4III	ACNGT	2 cut(s)	300, 880
HpyCH4V	TGCA	7 cut(s)	179, 224, 290, 633, 734, 926, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 368, 593, 639
HpyF3I	CTNAG	2 cut(s)	463, 721
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	183, 452, 637, 734
HspAI	GCGC	1 cut(s)	6
KasI	GGCGCC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	86, 184, 561, 676
LmnI	GCTCC	3 cut(s)	109, 255, 713
Lsp1109I	GCAGC	3 cut(s)	104, 163, 208
LweI	GCATC	1 cut(s)	299
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	1 cut(s)	890
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	4 cut(s)	88, 186, 563, 678
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	4 cut(s)	86, 184, 561, 676
MboII	GAAGA	2 cut(s)	557, 863
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	2 cut(s)	106, 873
MluCI	AATT	7 cut(s)	452, 471, 540, 651, 660, 943, 952
Mly113I	GGCGCC	1 cut(s)	6
MmeI	TCCRAC	2 cut(s)	140, 185
MnlI	CCTC	8 cut(s)	19, 63, 93, 243, 263, 505, 691, 854
Mph1103I	ATGCAT	1 cut(s)	635
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	3 cut(s)	333, 785, 976
MslI	CAYNNNNRTG	1 cut(s)	819
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	101, 368, 593, 639
NarI	GGCGCC	1 cut(s)	6
NdeII	GATC	4 cut(s)	86, 184, 561, 676
NlaIII	CATG	4 cut(s)	183, 452, 637, 734
NlaIV	GGNNCC	4 cut(s)	7, 251, 678, 842
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	905
NsiI	ATGCAT	1 cut(s)	635
NspI	RCATGY	2 cut(s)	183, 734
NspV	TTCGAA	1 cut(s)	912
PaeI	GCATGC	1 cut(s)	734
PctI	GAATGC	1 cut(s)	814
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	365, 548, 766
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	4 cut(s)	94, 178, 223, 718
PluTI	GGCGCC	1 cut(s)	9
PpuMI	RGGWCCY	3 cut(s)	152, 197, 841
Psp5II	RGGWCCY	3 cut(s)	152, 197, 841
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	7, 251, 678, 842
PspPI	GGNCC	3 cut(s)	152, 197, 841
PspPPI	RGGWCCY	3 cut(s)	152, 197, 841
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	333, 785, 976
SatI	GCNGC	4 cut(s)	93, 177, 222, 717
Sau3AI	GATC	4 cut(s)	86, 184, 561, 676
Sau96I	GGNCC	3 cut(s)	152, 197, 841
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	2 cut(s)	106, 873
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	299
SfoI	GGCGCC	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	912
SinI	GGWCC	3 cut(s)	152, 197, 841
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SphI	GCATGC	1 cut(s)	734
Sse9I	AATT	7 cut(s)	452, 471, 540, 651, 660, 943, 952
SsiI	CCGC	2 cut(s)	350, 716
SspDI	GGCGCC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	890
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	300, 880
TaqI	TCGA	4 cut(s)	13, 85, 575, 912
TasI	AATT	7 cut(s)	452, 471, 540, 651, 660, 943, 952
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	3 cut(s)	365, 548, 766
Tru1I	TTAA	3 cut(s)	333, 785, 976
Tru9I	TTAA	3 cut(s)	333, 785, 976
TscAI	CASTG	2 cut(s)	383, 776
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	3 cut(s)	92, 176, 221
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	5 cut(s)	263, 465, 507, 624, 650
TspRI	CASTG	2 cut(s)	383, 776
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	3 cut(s)	152, 197, 841
XapI	RAATTY	2 cut(s)	651, 952
XceI	RCATGY	2 cut(s)	183, 734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	1 cut(s)	890
Zsp2I	ATGCAT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.