Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Forward (+)

87646626 .. 87648188

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAGATCATGGAAGAGAAGAAAGACAGAGCAGAGTTTGAGGGCTTGAAACCTTTTTGGGGTCTTCCTCCTCCTCCTCCTCCTTCAGTGCTCAAGCCCTTTGTGCATGGCGGAGTCACTGGGCTTCTCACAGGCTCTATTAATGGGGCAATGGAGTACTCAGGATTCCACATCCTAAAGAACGTCCCTCTCTTTCGAAACCATCCCACATATGTGCCCCGTTGGATCTTTGTCAAGATAATCCCTGGTCTGGTTTTGATTGATGCTTTGGCTTATAGTCAGCTACTTGGAATTTACGAGATTCTGAGACGAAGAGCAATTGCTACAAATGAGGGTATGCAGCCAAGGCTTTATCAGGAAGCTGCTTGTGGGTTGATTGCAGGAGCAGCTGGAACATGTGCAGGGGCTATTTCAGCATTGTCTGCTGCTGCATGCGCTCTACTGGCACCATATGCTTGCTCCCTCGTTTTTGCACGTGAAACTCTAAGATTAAAAGGACCACTAGGATTCATAACAGGACTTTCTGGTTTCTGTTTTCACGAAGCGCCTAAGGTCATGGTATTCTGGGCTGTTTTTGAAGAACTCCAGAAATATTCCAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

202

Amino Acids

21.91

Weight (kDa)

9.13

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	69
AcvI	CACGTG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	59, 250
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	49, 578
AjnI	CCWGG	1 cut(s)	244
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	283, 362, 389
AluI	AGCT	3 cut(s)	283, 362, 389
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	233
ApeKI	GCWGC	5 cut(s)	340, 362, 386, 425, 428
ApoI	RAATTY	1 cut(s)	291
AseI	ATTAAT	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	437, 547
AspS9I	GGNCC	1 cut(s)	497
AsuII	TTCGAA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	445
BbrPI	CACGTG	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	349, 352, 398, 412, 415
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	548
BisI	GCNGC	5 cut(s)	341, 363, 387, 426, 429
BlsI	GCNGC	5 cut(s)	342, 364, 388, 427, 430
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	569
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	244, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 250
Bse1I	ACTGG	2 cut(s)	124, 447
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	244, 344
BseGI	GGATG	2 cut(s)	171, 202
BseLI	CCNNNNNNNGG	2 cut(s)	59, 250
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	174, 296
BseNI	ACTGG	2 cut(s)	124, 447
BseRI	GAGGAG	4 cut(s)	60, 63, 66, 69
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	5 cut(s)	349, 352, 398, 412, 415
BsgI	GTGCAG	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	59, 250
BsmAI	GTCTC	1 cut(s)	301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	93, 219
Bsp143I	GATC	2 cut(s)	6, 225
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	173, 297
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	124, 447
BssECI	CCNNGG	2 cut(s)	244, 344
BssMI	GATC	2 cut(s)	6, 225
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	9, 307
BstAPI	GCANNNNNTGC	2 cut(s)	422, 452
BstBAI	YACGTR	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	433, 457
BstDEI	CTNAG	4 cut(s)	160, 305, 485, 549
BstF5I	GGATG	2 cut(s)	171, 202
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	437, 547
BstKTI	GATC	2 cut(s)	9, 228
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	6, 225
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 346, 386, 413, 422, 434, 443, 452
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	2 cut(s)	399, 435
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	5 cut(s)	349, 352, 398, 412, 415
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	171, 202
BtsIMutI	CAGTG	2 cut(s)	93, 117
Cac8I	GCNNGC	2 cut(s)	433, 457
CfoI	GCGC	2 cut(s)	437, 547
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	6 cut(s)	10, 107, 396, 432, 556, 603
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	4 cut(s)	160, 305, 485, 549
DpnI	GATC	2 cut(s)	8, 227
DpnII	GATC	2 cut(s)	6, 225
Eam1104I	CTCTTC	2 cut(s)	9, 307
EarI	CTCTTC	2 cut(s)	9, 307
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	69
Eco72I	CACGTG	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	6 cut(s)	13, 110, 399, 435, 559, 606
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	6 cut(s)	9, 106, 395, 431, 555, 602
FauNDI	CATATG	2 cut(s)	211, 451
Fnu4HI	GCNGC	5 cut(s)	341, 363, 387, 426, 429
FokI	GGATG	2 cut(s)	158, 189
Fsp4HI	GCNGC	5 cut(s)	341, 363, 387, 426, 429
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	2 cut(s)	436, 546
GluI	GCNGC	5 cut(s)	341, 363, 387, 426, 429
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	548
HhaI	GCGC	2 cut(s)	437, 547
Hin1II	CATG	6 cut(s)	13, 110, 399, 435, 559, 606
Hin6I	GCGC	2 cut(s)	435, 545
HinP1I	GCGC	2 cut(s)	435, 545
HinfI	GANTC	4 cut(s)	114, 165, 301, 507
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	5 cut(s)	162, 235, 356, 539, 586
HpyAV	CCTTC	1 cut(s)	93
HpyCH4IV	ACGT	2 cut(s)	183, 475
HpyCH4V	TGCA	6 cut(s)	106, 340, 380, 401, 431, 473
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 346, 386, 413, 422, 434, 443, 452
HpyF3I	CTNAG	4 cut(s)	160, 305, 485, 549
HpySE526I	ACGT	2 cut(s)	183, 475
Hsp92II	CATG	6 cut(s)	13, 110, 399, 435, 559, 606
HspAI	GCGC	2 cut(s)	435, 545
Kzo9I	GATC	2 cut(s)	6, 225
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	383, 464
Lsp1109I	GCAGC	5 cut(s)	349, 352, 398, 412, 415
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	2 cut(s)	183, 475
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	8, 227
MboI	GATC	2 cut(s)	6, 225
MboII	GAAGA	6 cut(s)	16, 26, 31, 56, 324, 590
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	93, 219
MluCI	AATT	2 cut(s)	291, 318
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	9 cut(s)	34, 78, 81, 84, 87, 90, 198, 325, 473
MseI	TTAA	2 cut(s)	141, 491
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	8 cut(s)	103, 346, 386, 413, 422, 434, 443, 452
NdeI	CATATG	2 cut(s)	211, 451
NdeII	GATC	2 cut(s)	6, 225
NlaIII	CATG	6 cut(s)	13, 110, 399, 435, 559, 606
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	2 cut(s)	399, 435
NspV	TTCGAA	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	435
PciI	ACATGT	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	165, 301, 507
PkrI	GCNGC	5 cut(s)	342, 364, 388, 427, 430
PleI	GAGTC	1 cut(s)	122
PmaCI	CACGTG	1 cut(s)	476
PmlI	CACGTG	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	476
PscI	ACATGT	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	141, 491
SatI	GCNGC	5 cut(s)	341, 363, 387, 426, 429
Sau3AI	GATC	2 cut(s)	6, 225
Sau96I	GGNCC	1 cut(s)	497
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	93, 219
SetI	ASST	7 cut(s)	55, 186, 285, 364, 391, 478, 555
SfaNI	GCATC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	196
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	435
Sse9I	AATT	2 cut(s)	291, 318
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	344
TaiI	ACGT	2 cut(s)	186, 478
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	291, 318
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	165, 301, 507
Tru1I	TTAA	2 cut(s)	141, 491
Tru9I	TTAA	2 cut(s)	141, 491
TscAI	CASTG	2 cut(s)	93, 124
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	5 cut(s)	340, 362, 386, 425, 428
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	17, 499
TspRI	CASTG	2 cut(s)	93, 124
VpaK11BI	GGWCC	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	2 cut(s)	399, 435
XspI	CTAG	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.