Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

86514793 .. 86516292

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAGATCATGGAAGAGAAGAAAGACAGAGCAGAGTTTGAGGGCTTGAAACCTTTTTGGGGTCTTCCTCCTCCTCCTTCAGTGCTCAAGCCCTTTGTGCATGGCGGAGTCGCTGGGCTTCTCACAGGCTCTATTAATGGGGCAATGGAGTACTCAGGATTCCACATCCTGAAGAACGTCCCTCTCTTTCGAAACCATCCCACATATGTGCCCCGTTGGATCTTTATAATCCCTGGTCTGGTTTTGATTGATGCTTTGGCTTATAGTCAGCTACTTGGAATTTACGAGATTCTGAGACGAAGAGCAATTGCTGCAAATGAGGGTATGCAGCCAAGGCTTTATCAGGAAGCTGCTTGTGGGTTGATTGCAGGAGCAGCTGGAACATGTGTCAGCTTTCCATTGTATCTAGGGCTTTACCGGAAGCGGTTTGAATCTATGGGGGATGCTGCAGGGCGGTGGAGACTAAGAAGCAATTTGTCACATATCTTCAGATATGGAAGTGTTTCATGGAAGAGAAGAGTTGGGTTAGGCATGGGTATGGTTGCTTCCTATAAGCCAAGTCTCCATTATCTCGTGGAATCTCGAGGTTTTAGTGAAGAGGATGCAAAATCTGGTGCAGGGGCTATTTCAGCATTGTCTGCTGCTGCATGCGCTGTATTGGCACCATATGCTTGCTCCCTCGTTCTTGCACGTGAAACTCTAAGATCAAGAGGACCCCTTGGATTCTTAACAGGACTTTCTGGTCTCTGTTTTCACGAAGCACCTAAGGTCATGGTATTCTGGGCTGTTTTTGAAGAACTCCAGAAATATTCCAAACCATCAATAGAATCCGAGCAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

280

Amino Acids

30.79

Weight (kDa)

9.43

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AasI	GACNNNNNNGTC	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	661
AciI	CCGC	3 cut(s)	105, 424, 454
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	3 cut(s)	63, 191, 472
AcvI	CACGTG	1 cut(s)	692
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	59, 238
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	49, 431, 794
AjnI	CCWGG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	271, 350, 377, 393
AluI	AGCT	4 cut(s)	271, 350, 377, 393
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	4 cut(s)	289, 454, 566, 749
AlwI	GGATC	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	582
ApeKI	GCWGC	7 cut(s)	311, 328, 350, 374, 446, 641, 644
ApoI	RAATTY	1 cut(s)	279
AseI	ATTAAT	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	713
AsuII	TTCGAA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	713
AxyI	CCTNAGG	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	661
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BauI	CACGAG	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	7 cut(s)	298, 337, 340, 386, 433, 628, 631
BccI	CCATC	2 cut(s)	204, 826
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	4 cut(s)	289, 454, 566, 749
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	7 cut(s)	312, 329, 351, 375, 447, 642, 645
BlsI	GCNGC	7 cut(s)	313, 330, 352, 376, 448, 643, 646
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	713
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	2 cut(s)	663, 715
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	3 cut(s)	241, 433, 592
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	785
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	232, 332, 718
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 238
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	232, 332, 718
BseGI	GGATG	4 cut(s)	165, 196, 448, 607
BseLI	CCNNNNNNNGG	2 cut(s)	59, 238
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	168, 284
BseRI	GAGGAG	2 cut(s)	60, 63
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	7 cut(s)	298, 337, 340, 386, 433, 628, 631
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	636
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	59, 238
BsmAI	GTCTC	4 cut(s)	289, 454, 566, 749
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	582
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	87, 213
Bsp143I	GATC	3 cut(s)	6, 219, 704
BspACI	CCGC	3 cut(s)	105, 424, 454
BspCNI	CTCAG	2 cut(s)	167, 285
BspLI	GGNNCC	2 cut(s)	663, 715
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	232, 332, 718
BssMI	GATC	3 cut(s)	6, 219, 704
BssSI	CACGAG	1 cut(s)	572
BssT1I	CCWWGG	2 cut(s)	332, 718
Bst2BI	CACGAG	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	234
Bst6I	CTCTTC	5 cut(s)	9, 295, 506, 511, 591
BstAPI	GCANNNNNTGC	3 cut(s)	311, 638, 668
BstBAI	YACGTR	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	649, 673
BstDEI	CTNAG	6 cut(s)	154, 293, 464, 701, 765, 840
BstF5I	GGATG	4 cut(s)	165, 196, 448, 607
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	3 cut(s)	9, 222, 707
BstMAI	GTCTC	4 cut(s)	289, 454, 566, 749
BstMBI	GATC	3 cut(s)	6, 219, 704
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 311, 334, 374, 629, 638, 650, 659, 668
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	387, 651
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	7 cut(s)	298, 337, 340, 386, 433, 628, 631
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	765
BtsCI	GGATG	4 cut(s)	165, 196, 448, 607
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	649, 673
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	713
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	7 cut(s)	10, 101, 384, 507, 532, 648, 772
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	6 cut(s)	154, 293, 464, 701, 765, 840
DpnI	GATC	3 cut(s)	8, 221, 706
DpnII	GATC	3 cut(s)	6, 219, 704
DrdI	GACNNNNNNGTC	1 cut(s)	741
DseDI	GACNNNNNNGTC	1 cut(s)	741
Eam1104I	CTCTTC	5 cut(s)	9, 295, 506, 511, 591
EarI	CTCTTC	5 cut(s)	9, 295, 506, 511, 591
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	332, 718
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	3 cut(s)	63, 191, 472
Eco72I	CACGTG	1 cut(s)	692
Eco81I	CCTNAGG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	332, 718
ErhI	CCWWGG	2 cut(s)	332, 718
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	7 cut(s)	13, 104, 387, 510, 535, 651, 775
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	7 cut(s)	9, 100, 383, 506, 531, 647, 771
FauNDI	CATATG	2 cut(s)	205, 667
Fnu4HI	GCNGC	7 cut(s)	312, 329, 351, 375, 447, 642, 645
FokI	GGATG	4 cut(s)	152, 183, 455, 614
Fsp4HI	GCNGC	7 cut(s)	312, 329, 351, 375, 447, 642, 645
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	7 cut(s)	312, 329, 351, 375, 447, 642, 645
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	785
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	7 cut(s)	13, 104, 387, 510, 535, 651, 775
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	7 cut(s)	108, 159, 289, 431, 578, 723, 827
HpaII	CCGG	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	294, 491, 832
Hpy188III	TCNNGA	7 cut(s)	156, 169, 344, 582, 708, 755, 802
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	2 cut(s)	177, 691
HpyCH4V	TGCA	9 cut(s)	100, 314, 328, 368, 449, 605, 617, 647, 689
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 311, 334, 374, 629, 638, 650, 659, 668
HpyF3I	CTNAG	6 cut(s)	154, 293, 464, 701, 765, 840
HpySE526I	ACGT	2 cut(s)	177, 691
Hsp92II	CATG	7 cut(s)	13, 104, 387, 510, 535, 651, 775
HspAI	GCGC	1 cut(s)	651
Kzo9I	GATC	3 cut(s)	6, 219, 704
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	371, 680
Lsp1109I	GCAGC	7 cut(s)	298, 337, 340, 386, 433, 628, 631
LweI	GCATC	3 cut(s)	241, 433, 592
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	177, 691
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	3 cut(s)	8, 221, 706
MboI	GATC	3 cut(s)	6, 219, 704
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	87, 213
MluCI	AATT	3 cut(s)	279, 306, 472
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	2 cut(s)	135, 728
MslI	CAYNNNNRTG	2 cut(s)	206, 536
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	9 cut(s)	97, 311, 334, 374, 629, 638, 650, 659, 668
NdeI	CATATG	2 cut(s)	205, 667
NdeII	GATC	3 cut(s)	6, 219, 704
NlaIII	CATG	7 cut(s)	13, 104, 387, 510, 535, 651, 775
NlaIV	GGNNCC	2 cut(s)	663, 715
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	2 cut(s)	387, 651
NspV	TTCGAA	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	651
PaeR7I	CTCGAG	1 cut(s)	582
PciI	ACATGT	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	6 cut(s)	159, 289, 431, 578, 723, 827
PkrI	GCNGC	7 cut(s)	313, 330, 352, 376, 448, 643, 646
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	1 cut(s)	692
PmlI	CACGTG	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	713
PscI	ACATGT	1 cut(s)	383
PshBI	ATTAAT	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	232
PspCI	CACGTG	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	663, 715
PspPI	GGNCC	1 cut(s)	713
PspPPI	RGGWCCY	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	206, 536
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	135, 728
SatI	GCNGC	7 cut(s)	312, 329, 351, 375, 447, 642, 645
Sau3AI	GATC	3 cut(s)	6, 219, 704
Sau96I	GGNCC	1 cut(s)	713
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	87, 213
SfaNI	GCATC	3 cut(s)	241, 433, 592
SfcI	CTRYAG	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	582
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	206, 536
SmlI	CTYRAG	2 cut(s)	86, 582
SmoI	CTYRAG	2 cut(s)	86, 582
SphI	GCATGC	1 cut(s)	651
Sse9I	AATT	3 cut(s)	279, 306, 472
SsiI	CCGC	3 cut(s)	105, 424, 454
SspI	AATATT	1 cut(s)	809
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	332, 718
TaiI	ACGT	2 cut(s)	180, 694
TaqI	TCGA	2 cut(s)	190, 583
TasI	AATT	3 cut(s)	279, 306, 472
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	6 cut(s)	159, 289, 431, 578, 723, 827
Tru1I	TTAA	2 cut(s)	135, 728
Tru9I	TTAA	2 cut(s)	135, 728
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	7 cut(s)	311, 328, 350, 374, 446, 641, 644
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	17, 495
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	713
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	2 cut(s)	387, 651
XhoI	CTCGAG	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.