Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Forward (+)

82704614 .. 82709516

Gene Structure 4903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG583700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGATCATGGAAGAGAAGAAAGACAGAGCAGAGTTTGAGGGCTTGAAACCTTTTTGGGGTCTTCCTCCTCCTCCTTCAGTGCTCAAGCCCTTTGTGCATGGCGGAGTCGCTGGGCTTCTCACAGGCGCTATGAATGGGGCAATAGAGTACTCAGGATTCCACATCCTAAAGAACGTTCCTCTCTTTCGAAACCATCCCACATATGTGCCGCGTTGGATCTTTGTCAAGATAATCCCTGGTCTGGTTTTGATTGATGCTTTGGCTTATAGTCAGCTACTTGGAATTTACGAGATTCCGAGACAAAGAGCAACTACAAATGAGGGTATGCAGCCAAGGCTTTATCAGGAAGCTGCTTGTGGGTTGATTGCAGGAGCAGCTGGAACATGTGTCAGCTTTCCATTGTATCTAGCGCTTTACCGGAAGCGGTTTGAATCTATGGGGGATGCTGCAGGGCGATGGAGACTAAGAAGCAATTTGTCACTGTTAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

164

Amino Acids

18.23

Weight (kDa)

9.61

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	214
AciI	CCGC	3 cut(s)	105, 212, 427
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	59, 244
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	49, 434
AjnI	CCWGG	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	277, 353, 380, 396
AluI	AGCT	4 cut(s)	277, 353, 380, 396
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	295, 457
AlwI	GGATC	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	414
ApeKI	GCWGC	4 cut(s)	331, 353, 377, 449
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	2 cut(s)	131, 415
AsuII	TTCGAA	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	340, 343, 389, 436
BccI	CCATC	2 cut(s)	204, 453
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	295, 457
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	2 cut(s)	132, 416
BisI	GCNGC	5 cut(s)	212, 332, 354, 378, 450
BlsI	GCNGC	5 cut(s)	213, 333, 355, 379, 451
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	247, 436
BpiI	GAAGAC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	238, 335
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 244
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	238, 335
BseGI	GGATG	3 cut(s)	165, 196, 451
BseLI	CCNNNNNNNGG	2 cut(s)	59, 244
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	60, 63
BseXI	GCAGC	4 cut(s)	340, 343, 389, 436
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	59, 244
BsmAI	GTCTC	2 cut(s)	295, 457
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	6, 219
BspACI	CCGC	3 cut(s)	105, 212, 427
BspCNI	CTCAG	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	238, 335
BssMI	GATC	2 cut(s)	6, 219
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	154, 467
BstF5I	GGATG	3 cut(s)	165, 196, 451
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	2 cut(s)	132, 416
BstHHI	GCGC	2 cut(s)	131, 415
BstKTI	GATC	2 cut(s)	9, 222
BstMAI	GTCTC	2 cut(s)	295, 457
BstMBI	GATC	2 cut(s)	6, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 337, 377
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	4 cut(s)	340, 343, 389, 436
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	3 cut(s)	165, 196, 451
BtsIMutI	CAGTG	2 cut(s)	87, 482
CfoI	GCGC	2 cut(s)	131, 415
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	10, 101, 387
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	154, 467
DpnI	GATC	2 cut(s)	8, 221
DpnII	GATC	2 cut(s)	6, 219
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	13, 104, 390
FaiI	YATR	9 cut(s)	11, 102, 134, 205, 207, 270, 329, 388, 440
FatI	CATG	3 cut(s)	9, 100, 386
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	212, 332, 354, 378, 450
FokI	GGATG	3 cut(s)	152, 183, 458
Fsp4HI	GCNGC	5 cut(s)	212, 332, 354, 378, 450
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	2 cut(s)	130, 414
GluI	GCNGC	5 cut(s)	212, 332, 354, 378, 450
GsaI	CCCAGC	1 cut(s)	117
HaeII	RGCGCY	2 cut(s)	132, 416
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	2 cut(s)	131, 415
Hin1II	CATG	3 cut(s)	13, 104, 390
Hin6I	GCGC	2 cut(s)	129, 413
HinP1I	GCGC	2 cut(s)	129, 413
HinfI	GANTC	4 cut(s)	108, 159, 295, 434
HpaII	CCGG	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	3 cut(s)	156, 229, 347
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	4 cut(s)	100, 331, 371, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 337, 377
HpyF3I	CTNAG	2 cut(s)	154, 467
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	13, 104, 390
HspAI	GCGC	2 cut(s)	129, 413
Kzo9I	GATC	2 cut(s)	6, 219
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	4 cut(s)	340, 343, 389, 436
LweI	GCATC	2 cut(s)	247, 436
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	2 cut(s)	8, 221
MboI	GATC	2 cut(s)	6, 219
MboII	GAAGA	4 cut(s)	16, 26, 31, 56
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	285, 475
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	6 cut(s)	34, 78, 81, 84, 192, 316
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	97, 337, 377
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	2 cut(s)	6, 219
NlaIII	CATG	3 cut(s)	13, 104, 390
NmuCI	GTSAC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	390
NspV	TTCGAA	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	159, 295, 434
PkrI	GCNGC	5 cut(s)	213, 333, 355, 379, 451
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	5 cut(s)	212, 332, 354, 378, 450
Sau3AI	GATC	2 cut(s)	6, 219
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	55, 180, 279, 355, 382, 398
SfaNI	GCATC	2 cut(s)	247, 436
SfcI	CTRYAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	285, 475
SsiI	CCGC	3 cut(s)	105, 212, 427
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	190
TasI	AATT	2 cut(s)	285, 475
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	159, 295, 434
TscAI	CASTG	2 cut(s)	87, 489
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	4 cut(s)	331, 353, 377, 449
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	2 cut(s)	17, 149
TspRI	CASTG	2 cut(s)	87, 489
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	390
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.