Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

39701682 .. 39704551

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGACCGATTGCAGAGAGTTGGAGAATCAGAAGTAAAAGTGTGTTACATATATTGAGATATGAAGGCCCTTGGTTGAAGAGAAGAGCTGGGTTAGGCATGGGTATGGTTGAAGCCTATAATCCAAGTCTCCATTATCTCATTGAATCTCATGGACCCGTTGCATTCTGCGATTCAACTAAGTTTGAAGAGTCGGTTGCACAAGTGAGCTATATTGCTTTCCTTAGCATTGGATGTTGGACTGTGATAGCCAGTGAAAGACTAGAAATTGATGATCAAATTAAGGTACAAATCTACCGCATGAATACCTCATTTGCTTCGAAGATTTCTAAGTCGCCTCACCAAACCCAGTTCGTCATGACAAAACTCTGGATCTGCTCTCGTAAAGCTCGAACCCGCTCTGAGCCCAGCACCTCAACGCTCCCGAATAAGCGCCTTGACGACCAGGCCTGCCCGACCCCACAACCCGTTTCTGACCGAGCCTCAACGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

165

Amino Acids

18.7

Weight (kDa)

9.3

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	399
AciI	CCGC	2 cut(s)	298, 397
AclWI	GGATC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	5 cut(s)	79, 113, 146, 177, 188
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	3 cut(s)	89, 210, 389
AluI	AGCT	3 cut(s)	89, 210, 389
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	2 cut(s)	67, 447
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	5, 68, 155
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	5, 155
BanII	GRGCYC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	2 cut(s)	5, 155
BmgT120I	GGNCC	3 cut(s)	5, 68, 155
BmiI	GGNNCC	2 cut(s)	6, 157
BmrFI	CCNGG	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	252, 349
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	252, 349
BseYI	CCCAGC	2 cut(s)	89, 407
BshFI	GGCC	2 cut(s)	69, 449
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	69, 449
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	274, 372
BspACI	CCGC	2 cut(s)	298, 397
BspANI	GGCC	2 cut(s)	69, 449
BspCNI	CTCAG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	6, 157
BspPI	GGATC	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	252, 349
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	2 cut(s)	274, 372
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	3 cut(s)	74, 79, 183
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	180, 224, 330, 402
BstF5I	GGATG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	277, 375
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	274, 372
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	69, 449
BtsCI	GGATG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	451
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	3 cut(s)	5, 68, 155
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	4 cut(s)	100, 152, 301, 358
CviJI	RGCY	9 cut(s)	69, 89, 116, 210, 251, 389, 406, 449, 482
CviKI_1	RGCY	9 cut(s)	69, 89, 116, 210, 251, 389, 406, 449, 482
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	4 cut(s)	180, 224, 330, 402
DpnI	GATC	2 cut(s)	276, 374
DpnII	GATC	2 cut(s)	274, 372
Eam1104I	CTCTTC	3 cut(s)	74, 79, 183
EarI	CTCTTC	3 cut(s)	74, 79, 183
Eco130I	CCWWGG	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	5, 155
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	4 cut(s)	103, 155, 304, 361
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	99, 151, 300, 357
FauI	CCCGC	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	274
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	434
GsaI	CCCAGC	2 cut(s)	93, 411
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	69, 449
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	103, 155, 304, 361
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	4 cut(s)	27, 146, 173, 191
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	32, 403, 475
Hpy188III	TCNNGA	3 cut(s)	358, 370, 424
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	14, 164, 200
HpyF3I	CTNAG	4 cut(s)	180, 224, 330, 402
Hsp92II	CATG	4 cut(s)	103, 155, 304, 361
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	274, 372
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	426, 495
LpnPI	CCDG	8 cut(s)	75, 265, 355, 362, 421, 431, 458, 463
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	2 cut(s)	276, 374
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	2 cut(s)	274, 372
MboII	GAAGA	4 cut(s)	91, 96, 200, 334
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	2 cut(s)	267, 279
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	4 cut(s)	319, 348, 424, 493
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	446
NdeII	GATC	2 cut(s)	274, 372
NlaIII	CATG	4 cut(s)	103, 155, 304, 361
NlaIV	GGNNCC	2 cut(s)	6, 157
NspV	TTCGAA	1 cut(s)	320
PagI	TCATGA	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	27, 146, 173
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	2 cut(s)	89, 407
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	6, 157
PspPI	GGNCC	3 cut(s)	5, 68, 155
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	274, 372
Sau96I	GGNCC	3 cut(s)	5, 68, 155
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	6 cut(s)	91, 212, 288, 311, 391, 416
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	2 cut(s)	5, 155
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	267, 279
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	2 cut(s)	298, 397
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	320, 391
TaqII	GACCGA	2 cut(s)	22, 492
TasI	AATT	2 cut(s)	267, 279
TfiI	GAWTC	3 cut(s)	27, 146, 173
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	78, 317
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	5, 155
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.