Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

1649577 .. 1651366

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGATCATGGAAGAGAAGAAAGACAGAGCAGAGTTTGAGGGCTTGAAACCTTTTTGGGGTCTTCCTCCTCCTCCTTCAGTGCTCAAGCCCTTTGTTCATGGCGGAGTCGCTGGGCTTCTCACAGGCTTTATGAATGGGGCAATAGAGTACTCAGGATTCCACATCCTAAAGAACGTCCCTCTCTTTCGAAACCATCCCACATATGTGCCCCGTTGGATCTTTGTCAAGATGATCCCTGGTCTGGTTTTGATTGATGCTTTGGCTTATAGTCAGCTACTTGGAATTTACGAGATTCTGAGACGAAGAGCAATTGCTACAAATGAGGGTATGCAGCCAAGGCTTTATCAGGAAGCTGCTTGTGGGTTGATTGCAGGAGCAGCTGGAACATGTGTCAGCTTTCCATTGTATCTAGCGCTTTACCGGAAGCGGTTTGAATCTCTGGGGGATGCTGCAGGGCGGTGGAGACTAAGAAGCAATTTGTCACATATCTTCAGATATGGAAGTGTCACATGGAAGAGAAGAGTTGGGTTAGGCATGGGTATGGTTGCTTCCTATAAGCCAAGTCTCCATTATCTCGTGGAATCTCGGGGTTTTAGTGAAGAGGATGCAAAATCTGGTGCAGGGGCTATTTCAGCATTGTCTGCCGCTGCATGCGCTCTACTGGCACCATATGCTTGCTCCCTCGTTTTTGCACGTGAAACTCTAAGATTAAAAGGACCCCTTGGATTCTTAACAGGACTTTCTGGTCTCTGTTTTCACGAAGCGCCTAAGGTCATGGTATTCTGGGCTGTTTTTGAAGAACTCCAGAAATATTCCAAACCATCAATAGAATCCGAGCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

282

Amino Acids

31.19

Weight (kDa)

9.47

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	667
AciI	CCGC	4 cut(s)	105, 430, 460, 648
AclWI	GGATC	2 cut(s)	227, 229
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	63, 478
AcvI	CACGTG	1 cut(s)	698
AfaI	GTAC	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	59, 244
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	49, 437, 800
AjnI	CCWGG	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	277, 356, 383, 399
AluI	AGCT	4 cut(s)	277, 356, 383, 399
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	4 cut(s)	295, 460, 572, 755
AlwI	GGATC	2 cut(s)	227, 229
Ama87I	CYCGRG	1 cut(s)	588
Aor51HI	AGCGCT	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	334, 356, 380, 452, 650
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	3 cut(s)	418, 659, 769
AspS9I	GGNCC	1 cut(s)	719
AsuII	TTCGAA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	719
AxyI	CCTNAGG	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	535, 567
BauI	CACGAG	1 cut(s)	578
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	343, 346, 392, 439, 637
BccI	CCATC	2 cut(s)	204, 832
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	4 cut(s)	295, 460, 572, 755
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	2 cut(s)	419, 770
BisI	GCNGC	6 cut(s)	335, 357, 381, 453, 648, 651
BlsI	GCNGC	6 cut(s)	336, 358, 382, 454, 649, 652
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	719
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	2 cut(s)	669, 721
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	247, 439, 598
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	791
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	238, 338, 724
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 244
Bse1I	ACTGG	1 cut(s)	669
Bse21I	CCTNAGG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	238, 338, 724
BseGI	GGATG	4 cut(s)	165, 196, 454, 613
BseLI	CCNNNNNNNGG	2 cut(s)	59, 244
BseMII	CTCAG	2 cut(s)	168, 290
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	2 cut(s)	60, 63
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	5 cut(s)	343, 346, 392, 439, 637
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	642
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	59, 244
BsmAI	GTCTC	4 cut(s)	295, 460, 572, 755
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	755
BsoBI	CYCGRG	1 cut(s)	588
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	87, 213
Bsp143I	GATC	3 cut(s)	6, 219, 234
BspACI	CCGC	4 cut(s)	105, 430, 460, 648
BspCNI	CTCAG	2 cut(s)	167, 291
BspLI	GGNNCC	2 cut(s)	669, 721
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	2 cut(s)	227, 229
BspQI	GCTCTTC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	669
BssECI	CCNNGG	3 cut(s)	238, 338, 724
BssMI	GATC	3 cut(s)	6, 219, 234
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	338, 724
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	5 cut(s)	9, 301, 512, 517, 597
BstAPI	GCANNNNNTGC	2 cut(s)	644, 674
BstBAI	YACGTR	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	655, 679
BstDEI	CTNAG	5 cut(s)	154, 299, 470, 707, 771
BstF5I	GGATG	4 cut(s)	165, 196, 454, 613
BstH2I	RGCGCY	2 cut(s)	419, 770
BstHHI	GCGC	3 cut(s)	418, 659, 769
BstKTI	GATC	3 cut(s)	9, 222, 237
BstMAI	GTCTC	4 cut(s)	295, 460, 572, 755
BstMBI	GATC	3 cut(s)	6, 219, 234
BstMWI	GCNNNNNNNGC	7 cut(s)	340, 380, 635, 644, 656, 665, 674
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	393, 657
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	5 cut(s)	343, 346, 392, 439, 637
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	771
BtsCI	GGATG	4 cut(s)	165, 196, 454, 613
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	655, 679
CfoI	GCGC	3 cut(s)	418, 659, 769
Cfr13I	GGNCC	1 cut(s)	719
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	7 cut(s)	10, 101, 390, 513, 538, 654, 778
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	5 cut(s)	154, 299, 470, 707, 771
DpnI	GATC	3 cut(s)	8, 221, 236
DpnII	GATC	3 cut(s)	6, 219, 234
DrdI	GACNNNNNNGTC	1 cut(s)	747
DseDI	GACNNNNNNGTC	1 cut(s)	747
Eam1104I	CTCTTC	5 cut(s)	9, 301, 512, 517, 597
EarI	CTCTTC	5 cut(s)	9, 301, 512, 517, 597
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	338, 724
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	719
Eco47III	AGCGCT	1 cut(s)	417
Eco57I	CTGAAG	2 cut(s)	63, 478
Eco72I	CACGTG	1 cut(s)	698
Eco81I	CCTNAGG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	338, 724
ErhI	CCWWGG	2 cut(s)	338, 724
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	7 cut(s)	13, 104, 393, 516, 541, 657, 781
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	7 cut(s)	9, 100, 389, 512, 537, 653, 777
FauNDI	CATATG	2 cut(s)	205, 673
Fnu4HI	GCNGC	6 cut(s)	335, 357, 381, 453, 648, 651
FokI	GGATG	4 cut(s)	152, 183, 461, 620
Fsp4HI	GCNGC	6 cut(s)	335, 357, 381, 453, 648, 651
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	3 cut(s)	417, 658, 768
GluI	GCNGC	6 cut(s)	335, 357, 381, 453, 648, 651
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	791
HaeII	RGCGCY	2 cut(s)	419, 770
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	3 cut(s)	418, 659, 769
Hin1II	CATG	7 cut(s)	13, 104, 393, 516, 541, 657, 781
Hin6I	GCGC	3 cut(s)	416, 657, 767
HinP1I	GCGC	3 cut(s)	416, 657, 767
HinfI	GANTC	7 cut(s)	108, 159, 295, 437, 584, 729, 833
HpaII	CCGG	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	300, 497, 838
Hpy188III	TCNNGA	5 cut(s)	156, 229, 350, 761, 808
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	2 cut(s)	177, 697
HpyCH4V	TGCA	7 cut(s)	334, 374, 455, 611, 623, 653, 695
HpyF10VI	GCNNNNNNNGC	7 cut(s)	340, 380, 635, 644, 656, 665, 674
HpyF3I	CTNAG	5 cut(s)	154, 299, 470, 707, 771
HpySE526I	ACGT	2 cut(s)	177, 697
Hsp92II	CATG	7 cut(s)	13, 104, 393, 516, 541, 657, 781
HspAI	GCGC	3 cut(s)	416, 657, 767
Kzo9I	GATC	3 cut(s)	6, 219, 234
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	377, 686
Lsp1109I	GCAGC	5 cut(s)	343, 346, 392, 439, 637
LweI	GCATC	3 cut(s)	247, 439, 598
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	2 cut(s)	177, 697
MaeIII	GTNAC	2 cut(s)	483, 508
MalI	GATC	3 cut(s)	8, 221, 236
MboI	GATC	3 cut(s)	6, 219, 234
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	87, 213
MluCI	AATT	3 cut(s)	285, 312, 478
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	8 cut(s)	34, 78, 81, 84, 192, 319, 598, 695
MseI	TTAA	3 cut(s)	713, 734, 847
MslI	CAYNNNNRTG	2 cut(s)	206, 542
MspA1I	CMGCKG	2 cut(s)	383, 650
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	7 cut(s)	340, 380, 635, 644, 656, 665, 674
NdeI	CATATG	2 cut(s)	205, 673
NdeII	GATC	3 cut(s)	6, 219, 234
NlaIII	CATG	7 cut(s)	13, 104, 393, 516, 541, 657, 781
NlaIV	GGNNCC	2 cut(s)	669, 721
NmuCI	GTSAC	2 cut(s)	483, 508
NspI	RCATGY	2 cut(s)	393, 657
NspV	TTCGAA	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	657
PciI	ACATGT	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	301
PfeI	GAWTC	6 cut(s)	159, 295, 437, 584, 729, 833
PkrI	GCNGC	6 cut(s)	336, 358, 382, 454, 649, 652
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	238
PspCI	CACGTG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	669, 721
PspPI	GGNCC	1 cut(s)	719
PspPPI	RGGWCCY	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	206, 542
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	713, 734, 847
SatI	GCNGC	6 cut(s)	335, 357, 381, 453, 648, 651
Sau3AI	GATC	3 cut(s)	6, 219, 234
Sau96I	GGNCC	1 cut(s)	719
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	87, 213
SetI	ASST	8 cut(s)	55, 180, 279, 358, 385, 401, 700, 777
SfaNI	GCATC	3 cut(s)	247, 439, 598
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	206, 542
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	3 cut(s)	285, 312, 478
SsiI	CCGC	4 cut(s)	105, 430, 460, 648
SspI	AATATT	1 cut(s)	815
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	2 cut(s)	338, 724
TaiI	ACGT	2 cut(s)	180, 700
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	285, 312, 478
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	6 cut(s)	159, 295, 437, 584, 729, 833
Tru1I	TTAA	3 cut(s)	713, 734, 847
Tru9I	TTAA	3 cut(s)	713, 734, 847
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	483, 508
TseI	GCWGC	5 cut(s)	334, 356, 380, 452, 650
Tsp45I	GTSAC	2 cut(s)	483, 508
TspDTI	ATGAA	3 cut(s)	17, 89, 149
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	2 cut(s)	393, 657
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.