Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

237958 .. 239448

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002245.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggaagagaagaaagacagagcagagtttgagggcttgaaacctttttggggtcttcctcctcctccttcagtgctcaagccctttgtgcatggcggagtcgctgggcttctcacaggctctattaatggggcaatggagtactcaggattccacatcctgaagaacgtccctctctttcgaaaccatcccacatatgtgccccgttggatctttgtcaagataatccctggtctggttttgattgatgctttggcttatagtcagctacttggaatttacgagattctgagacgaagagcaattgctgcaaatgagggtatgcagccaaggctttatcaggaagctgcttgtgggttgattgcaggagcagctggaacatgtgtcagctttccattgtatctagcgctttaccggaagcggtttgaatctatgggggatgctgcagggcggtggagactaagaagcaatttgtcacatatcttcagatatggaagtgtttcatggaagagaagagttgggttaggcatgggtatggttgcttcctataagccaagtctccattatctcgtggaatctcgaggttttagtgaagaggatgcaaaatctggtgcaggggctatttcagcattttctgctgctgcatgcgctgtattggcaccatatgcttgctccctcgttcttgcacgtgaaactctaagatcaagaggaccccttggattcttaacaggactttctggtctctgttttcacgaagcacctaaggtcatggtattctgggctgtttttgaagaactccagaaatattccaaaccatcaatagaatccgagcaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

279

Amino Acids

30.7

Weight (kDa)

9.43

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	658
AciI	CCGC	3 cut(s)	96, 421, 451
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	3 cut(s)	54, 182, 469
AcvI	CACGTG	1 cut(s)	689
AfaI	GTAC	1 cut(s)	143
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	50, 235
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	40, 428, 791
AjnI	CCWGG	1 cut(s)	229
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	4 cut(s)	268, 347, 374, 390
AluI	AGCT	4 cut(s)	268, 347, 374, 390
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	4 cut(s)	286, 451, 563, 746
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	579
Aor51HI	AGCGCT	1 cut(s)	408
ApeKI	GCWGC	7 cut(s)	308, 325, 347, 371, 443, 638, 641
ApoI	RAATTY	1 cut(s)	276
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	499
AspLEI	GCGC	2 cut(s)	409, 650
AspS9I	GGNCC	1 cut(s)	710
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	710
AxyI	CCTNAGG	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	658
BarI	GAAGNNNNNNTAC	2 cut(s)	526, 558
BauI	CACGAG	1 cut(s)	569
BbrPI	CACGTG	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	7 cut(s)	295, 334, 337, 383, 430, 625, 628
BccI	CCATC	2 cut(s)	195, 823
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	4 cut(s)	286, 451, 563, 746
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	410
BisI	GCNGC	7 cut(s)	309, 326, 348, 372, 444, 639, 642
BlsI	GCNGC	7 cut(s)	310, 327, 349, 373, 445, 640, 643
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	660, 712
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	238, 430, 589
BpiI	GAAGAC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	229, 329, 715
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 235
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	229, 329, 715
BseGI	GGATG	4 cut(s)	156, 187, 445, 604
BseLI	CCNNNNNNNGG	2 cut(s)	50, 235
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	159, 281
BseRI	GAGGAG	2 cut(s)	51, 54
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	7 cut(s)	295, 334, 337, 383, 430, 625, 628
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	633
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	50, 235
BsmAI	GTCTC	4 cut(s)	286, 451, 563, 746
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	1 cut(s)	579
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	78, 204
Bsp143I	GATC	2 cut(s)	210, 701
BspACI	CCGC	3 cut(s)	96, 421, 451
BspCNI	CTCAG	2 cut(s)	158, 282
BspLI	GGNNCC	2 cut(s)	660, 712
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	229, 329, 715
BssMI	GATC	2 cut(s)	210, 701
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	2 cut(s)	329, 715
Bst2BI	CACGAG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	231
Bst6I	CTCTTC	4 cut(s)	292, 503, 508, 588
BstAPI	GCANNNNNTGC	3 cut(s)	308, 635, 665
BstBAI	YACGTR	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	646, 670
BstDEI	CTNAG	6 cut(s)	145, 290, 461, 698, 762, 837
BstF5I	GGATG	4 cut(s)	156, 187, 445, 604
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	409, 650
BstKTI	GATC	2 cut(s)	213, 704
BstMAI	GTCTC	4 cut(s)	286, 451, 563, 746
BstMBI	GATC	2 cut(s)	210, 701
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 308, 331, 371, 626, 635, 647, 656, 665
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	2 cut(s)	384, 648
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	7 cut(s)	295, 334, 337, 383, 430, 625, 628
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	762
BtsCI	GGATG	4 cut(s)	156, 187, 445, 604
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	646, 670
CfoI	GCGC	2 cut(s)	409, 650
Cfr13I	GGNCC	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	6 cut(s)	92, 381, 504, 529, 645, 769
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	6 cut(s)	145, 290, 461, 698, 762, 837
DpnI	GATC	2 cut(s)	212, 703
DpnII	GATC	2 cut(s)	210, 701
DrdI	GACNNNNNNGTC	1 cut(s)	738
DseDI	GACNNNNNNGTC	1 cut(s)	738
Eam1104I	CTCTTC	4 cut(s)	292, 503, 508, 588
EarI	CTCTTC	4 cut(s)	292, 503, 508, 588
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	329, 715
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	710
Eco47III	AGCGCT	1 cut(s)	408
Eco57I	CTGAAG	3 cut(s)	54, 182, 469
Eco72I	CACGTG	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	329, 715
ErhI	CCWWGG	2 cut(s)	329, 715
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	6 cut(s)	95, 384, 507, 532, 648, 772
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	6 cut(s)	91, 380, 503, 528, 644, 768
FauNDI	CATATG	2 cut(s)	196, 664
Fnu4HI	GCNGC	7 cut(s)	309, 326, 348, 372, 444, 639, 642
FokI	GGATG	4 cut(s)	143, 174, 452, 611
Fsp4HI	GCNGC	7 cut(s)	309, 326, 348, 372, 444, 639, 642
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	2 cut(s)	408, 649
GluI	GCNGC	7 cut(s)	309, 326, 348, 372, 444, 639, 642
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	782
HaeII	RGCGCY	1 cut(s)	410
HapII	CCGG	1 cut(s)	415
HhaI	GCGC	2 cut(s)	409, 650
Hin1II	CATG	6 cut(s)	95, 384, 507, 532, 648, 772
Hin6I	GCGC	2 cut(s)	407, 648
HinP1I	GCGC	2 cut(s)	407, 648
HinfI	GANTC	7 cut(s)	99, 150, 286, 428, 575, 720, 824
HpaII	CCGG	1 cut(s)	415
Hpy188I	TCNGA	3 cut(s)	291, 488, 829
Hpy188III	TCNNGA	8 cut(s)	147, 160, 220, 341, 579, 705, 752, 799
HpyAV	CCTTC	1 cut(s)	78
HpyCH4IV	ACGT	2 cut(s)	168, 688
HpyCH4V	TGCA	9 cut(s)	91, 311, 325, 365, 446, 602, 614, 644, 686
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 308, 331, 371, 626, 635, 647, 656, 665
HpyF3I	CTNAG	6 cut(s)	145, 290, 461, 698, 762, 837
HpySE526I	ACGT	2 cut(s)	168, 688
Hsp92II	CATG	6 cut(s)	95, 384, 507, 532, 648, 772
HspAI	GCGC	2 cut(s)	407, 648
Kzo9I	GATC	2 cut(s)	210, 701
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	368, 677
Lsp1109I	GCAGC	7 cut(s)	295, 334, 337, 383, 430, 625, 628
LweI	GCATC	3 cut(s)	238, 430, 589
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	168, 688
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	2 cut(s)	212, 703
MboI	GATC	2 cut(s)	210, 701
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	78, 204
MluCI	AATT	3 cut(s)	276, 303, 469
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	2 cut(s)	126, 725
MslI	CAYNNNNRTG	2 cut(s)	197, 533
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	9 cut(s)	88, 308, 331, 371, 626, 635, 647, 656, 665
NdeI	CATATG	2 cut(s)	196, 664
NdeII	GATC	2 cut(s)	210, 701
NlaIII	CATG	6 cut(s)	95, 384, 507, 532, 648, 772
NlaIV	GGNNCC	2 cut(s)	660, 712
NmuCI	GTSAC	1 cut(s)	474
NspI	RCATGY	2 cut(s)	384, 648
NspV	TTCGAA	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	648
PaeR7I	CTCGAG	1 cut(s)	579
PciI	ACATGT	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	6 cut(s)	150, 286, 428, 575, 720, 824
PkrI	GCNGC	7 cut(s)	310, 327, 349, 373, 445, 640, 643
PleI	GAGTC	1 cut(s)	107
PmaCI	CACGTG	1 cut(s)	689
PmlI	CACGTG	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	689
PpuMI	RGGWCCY	1 cut(s)	710
PscI	ACATGT	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	689
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	660, 712
PspPI	GGNCC	1 cut(s)	710
PspPPI	RGGWCCY	1 cut(s)	710
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	197, 533
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	126, 725
SatI	GCNGC	7 cut(s)	309, 326, 348, 372, 444, 639, 642
Sau3AI	GATC	2 cut(s)	210, 701
Sau96I	GGNCC	1 cut(s)	710
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	78, 204
SfaNI	GCATC	3 cut(s)	238, 430, 589
SfcI	CTRYAG	1 cut(s)	444
Sfr274I	CTCGAG	1 cut(s)	579
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	710
SlaI	CTCGAG	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	197, 533
SmlI	CTYRAG	2 cut(s)	77, 579
SmoI	CTYRAG	2 cut(s)	77, 579
SphI	GCATGC	1 cut(s)	648
Sse9I	AATT	3 cut(s)	276, 303, 469
SsiI	CCGC	3 cut(s)	96, 421, 451
SspI	AATATT	1 cut(s)	806
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	329, 715
TaiI	ACGT	2 cut(s)	171, 691
TaqI	TCGA	2 cut(s)	181, 580
TasI	AATT	3 cut(s)	276, 303, 469
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	6 cut(s)	150, 286, 428, 575, 720, 824
Tru1I	TTAA	2 cut(s)	126, 725
Tru9I	TTAA	2 cut(s)	126, 725
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	7 cut(s)	308, 325, 347, 371, 443, 638, 641
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	710
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	2 cut(s)	384, 648
XhoI	CTCGAG	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	1 cut(s)	404
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.