Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8166610.1

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Forward (+)

17 .. 656

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8166610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtaccggccgatctctcgaaaaactgctgcatcttcatcagctgaaccatcatcaacagctcgtcgatggaagtatgacgtgattttgattttcaagcatggtgagactagttttatatcacatttatcccatcggctgcaactgaagagaatcacaacattcaccgatcatcaagttattgcaccaggggaacttatttctagcgctcgcttaaaggcaattgaagaatcaaggttcgcaattgttgttctgtctcaacattatgcttgttctgcttggtatttggatgaacttacaaaagtttgccagttcatggaggacggtcacagaattcttccagttttttatgaggccaaccctagtgatgtaagaaatcaaaaggggagttttcaggatgaaaggactgggacagtacttgtcgaagccatggtggcatctgtgtgcagtgggcactcttggcaattcggatcaaagaaggtgaatcagtggagagatgctttaagaaaagtgggcactttgtctgggtggcatacacaggattacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

183

Amino Acids

20.88

Weight (kDa)

9.32

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	316
AclWI	GGATC	1 cut(s)	478
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	5, 417
AfeI	AGCGCT	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	97, 227
AhlI	ACTAGT	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	44, 62
AluI	AGCT	2 cut(s)	44, 62
Alw26I	GTCTC	2 cut(s)	101, 261
AlwI	GGATC	1 cut(s)	478
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	2 cut(s)	8, 354
ApeKI	GCWGC	2 cut(s)	29, 139
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	116, 157, 493
BaeGI	GKGCMC	2 cut(s)	456, 518
BbvI	GCAGC	2 cut(s)	16, 126
BccI	CCATC	3 cut(s)	58, 63, 141
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	101, 261
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	3 cut(s)	111, 204, 363
BfoI	RGCGCY	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	30, 140
BlsI	GCNGC	2 cut(s)	31, 141
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	41, 446, 487
BmuI	ACTGGG	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	188, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	3 cut(s)	310, 341, 412
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	188, 429
BseGI	GGATG	2 cut(s)	295, 403
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseNI	ACTGG	3 cut(s)	310, 341, 412
BseSI	GKGCMC	2 cut(s)	456, 518
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	16, 126
BsgI	GTGCAG	1 cut(s)	466
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	10, 356
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	101, 261
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	10, 356
Bsp1286I	GDGCHC	2 cut(s)	456, 518
Bsp143I	GATC	3 cut(s)	12, 169, 470
Bsp19I	CCATGG	1 cut(s)	429
BspANI	GGCC	2 cut(s)	10, 356
BspPI	GGATC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	310, 341, 412
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	188, 429
BssMI	GATC	3 cut(s)	12, 169, 470
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	326, 415
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	295, 403
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	15, 172, 473
BstMAI	GTCTC	2 cut(s)	101, 261
BstMBI	GATC	3 cut(s)	12, 169, 470
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 434, 460
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	2 cut(s)	456, 518
BstV1I	GCAGC	2 cut(s)	16, 126
BstZI	CGGCCG	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	10, 356
BtgI	CCRYGG	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	295, 403
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	454, 494
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	4, 416
CviAII	CATG	3 cut(s)	101, 316, 430
CviJI	RGCY	6 cut(s)	10, 44, 62, 139, 356, 428
CviKI_1	RGCY	6 cut(s)	10, 44, 62, 139, 356, 428
CviQI	GTAC	2 cut(s)	4, 416
DpnI	GATC	3 cut(s)	14, 171, 472
DpnII	GATC	3 cut(s)	12, 169, 470
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	429
Eco47III	AGCGCT	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	104, 319, 433
FaiI	YATR	8 cut(s)	78, 102, 119, 267, 317, 351, 431, 534
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	3 cut(s)	100, 315, 429
Fnu4HI	GCNGC	2 cut(s)	30, 140
FokI	GGATG	2 cut(s)	302, 410
Fsp4HI	GCNGC	2 cut(s)	30, 140
FspBI	CTAG	3 cut(s)	111, 204, 363
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	30, 140
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	10, 356
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	104, 319, 433
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	153, 230, 484
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	3 cut(s)	116, 157, 493
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	2 cut(s)	18, 395
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	2 cut(s)	326, 415
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	32, 142, 185, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 434, 460
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	104, 319, 433
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	12, 169, 470
LpnPI	CCDG	9 cut(s)	20, 174, 201, 323, 354, 380, 393, 510, 524
Lsp1109I	GCAGC	2 cut(s)	16, 126
LweI	GCATC	3 cut(s)	41, 446, 487
MaeI	CTAG	3 cut(s)	111, 204, 363
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	14, 171, 472
MboI	GATC	3 cut(s)	12, 169, 470
MboII	GAAGA	4 cut(s)	27, 160, 239, 329
MfeI	CAATTG	2 cut(s)	222, 243
MhlI	GDGCHC	2 cut(s)	456, 518
MluCI	AATT	4 cut(s)	222, 243, 333, 464
MnlI	CCTC	2 cut(s)	313, 346
MseI	TTAA	2 cut(s)	215, 503
MslI	CAYNNNNRTG	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	222, 243
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	275, 434, 460
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	12, 169, 470
NlaIII	CATG	3 cut(s)	104, 319, 433
NmuCI	GTSAC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	153, 230, 484
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	31, 141
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	5, 417
RsaNI	GTAC	2 cut(s)	4, 416
RseI	CAYNNNNRTG	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	215, 503
SatI	GCNGC	2 cut(s)	30, 140
Sau3AI	GATC	3 cut(s)	12, 169, 470
ScaI	AGTACT	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	456, 518
SetI	ASST	5 cut(s)	46, 64, 84, 239, 483
SfaNI	GCATC	3 cut(s)	41, 446, 487
SmiMI	CAYNNNNRTG	1 cut(s)	442
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	4 cut(s)	222, 243, 333, 464
SspMI	CTAG	3 cut(s)	111, 204, 363
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	326, 415
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	19, 67, 423
TasI	AATT	4 cut(s)	222, 243, 333, 464
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	3 cut(s)	153, 230, 484
Tru1I	TTAA	2 cut(s)	215, 503
Tru9I	TTAA	2 cut(s)	215, 503
TscAI	CASTG	2 cut(s)	454, 494
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	29, 139
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	27, 304, 306, 414
TspRI	CASTG	2 cut(s)	454, 494
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	333
XspI	CTAG	3 cut(s)	111, 204, 363
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.