Rw1G036530

thiosulfate transmembrane transporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006401
Physical Location & Seq
Forward (+)
64448963 .. 64450491
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036530.1

Sequence Viewer

Length: 342 bp
ATGGGACCAATTGCAGTGCGTTGGAGAATCAGAAGTAAAAGTGTGTTACATATATTGAGATATGGAGGCCCTTGGTTGAAGAGAAGAGCTGGGTTAGGCATGGGTATGGTTGCAGCCTATAATCCAAGTCTCCATTATCTCATTGAATCTTATGGTTTTATCGAAGAGGATGCAAAATCTTGGAACCGTCGTGTGAAGGGCTCGGCAGCATGGTGCGCAGCATGTCGGCAGCCTGTCGACAGCATTAGCTGTTGCGTGACTATTCTTCAAACGACGGGCGACTTTAGAAATTGTTGTGTGAAGGCAATTCAGAGGTCGCTTTATTTTATGCCCGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04964 map04964
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

113

Amino Acids

12.76

Weight (kDa)

9.78

Isoelectric Point (pI)

81.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 217
AccI GTMKAC 1 cut(s) 237
AgsI TTSAA 3 cut(s) 79, 146, 269
AluBI AGCT 2 cut(s) 89, 249
AluI AGCT 2 cut(s) 89, 249
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 4 cut(s) 113, 206, 218, 229
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 5, 68
AvaII GGWCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 203
BbvI GCAGC 4 cut(s) 125, 218, 230, 241
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BcoDI GTCTC 1 cut(s) 134
BisI GCNGC 4 cut(s) 114, 207, 219, 230
BlsI GCNGC 4 cut(s) 115, 208, 220, 231
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 5, 68
BmiI GGNNCC 2 cut(s) 6, 185
BmsI GCATC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 175
BseXI GCAGC 4 cut(s) 125, 218, 230, 241
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 203
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 6, 185
BspQI GCTCTTC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 3 cut(s) 74, 79, 159
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 125, 218, 230, 241
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 5, 68
CviAII CATG 3 cut(s) 100, 210, 222
CviJI RGCY 6 cut(s) 69, 89, 116, 201, 232, 249
CviKI_1 RGCY 6 cut(s) 69, 89, 116, 201, 232, 249
Eam1104I CTCTTC 3 cut(s) 74, 79, 159
EarI CTCTTC 3 cut(s) 74, 79, 159
Eco130I CCWWGG 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 3 cut(s) 103, 213, 225
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 99, 209, 221
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 114, 207, 219, 230
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 4 cut(s) 114, 207, 219, 230
FspI TGCGCA 1 cut(s) 217
GlaI GCGC 1 cut(s) 217
GluI GCNGC 4 cut(s) 114, 207, 219, 230
GsaI CCCAGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 103, 213, 225
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 27, 146
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 32, 312
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 2 cut(s) 192, 277
HpyAV CCTTC 2 cut(s) 190, 295
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 14, 113, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
Hsp92II CATG 3 cut(s) 103, 213, 225
HspAI GCGC 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 75, 246
Lsp1109I GCAGC 4 cut(s) 125, 218, 230, 241
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 45, 256
MboII GAAGA 4 cut(s) 91, 96, 176, 257
MfeI CAATTG 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 3 cut(s) 9, 289, 306
MnlI CCTC 3 cut(s) 59, 160, 306
MslI CAYNNNNRTG 1 cut(s) 104
MunI CAATTG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 215
NlaIII CATG 3 cut(s) 103, 213, 225
NlaIV GGNNCC 2 cut(s) 6, 185
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 217
NspI RCATGY 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 27, 146
PkrI GCNGC 4 cut(s) 115, 208, 220, 231
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 6, 185
PspPI GGNCC 2 cut(s) 5, 68
RseI CAYNNNNRTG 1 cut(s) 104
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 4 cut(s) 114, 207, 219, 230
Sau96I GGNCC 2 cut(s) 5, 68
SduI GDGCHC 1 cut(s) 203
SetI ASST 3 cut(s) 91, 251, 317
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 3 cut(s) 9, 289, 306
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 162, 237
TasI AATT 3 cut(s) 9, 289, 306
TfiI GAWTC 2 cut(s) 27, 146
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 4 cut(s) 113, 206, 218, 229
Tsp45I GTSAC 1 cut(s) 256
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.