Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Reverse (-)

334453 .. 336901

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1004000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGAGAGAGAAGAGAATGTGGGCATGAAATCCTTGAGTAAATCAGGTAGTAGTCCTCCTCCTTCAGGTTCAAATCCACGGTGGATGCAACATTACTGGCCGTCGGTGAAGCCATTTGTGTACGGTGGAGCTGCTGGGTTTTTTACAAGTTTCCTCGCTTTTGCCAGTTCGGCCACCCTCTTCTATTCCCCATCTCCAGACATTGTCGCTCGCTTTCAAAACACTCCCACATTCCATTTGTTTTCCAAAGAAAACATCAAGATTATTCCTCGTGTGATTTTGGCTAATACTTTCATTGCGTCTCAACTACTTGGATTATTCGAGATTCTGAGAAGGAAAGCAATTTCTACGAACGATGGAATGCCACCAATGTTACATCAGGAAGCTGCTTGTGGGCTGGCTGCTGGAGCAGTTGCAGCATGTATTAGGGTTCCATTGTATTTGCATGTAGGATACTATAGAGCTAAAATTGGATCACCTAACTTTTTTGCAAAGCCTTGGACATTGGCAGATTTAGCTAGGTACCCAAAAATATGGACAAAAGGAATGGGTCCTTATGTGAGGTCAAGAACCAGCTTAGACTTCGGTATGCTTGCCTCCTATAATCCAAGTCTCCGTTATCTCAAGGAATCCTGTGGTTTCAGCCAATCTGACGCACAATTCGGTGCTAGTGTTATATCAGGTTTGTGTGCTGCAGCATGCGAATCAGCGTTTCGAAATGTTAGCTCCCTGGATTCCGCACTTAAACTTCTAAAATCAAGAGGACCCCTTGCATTCTGTACTGGGATTCCTTCTTCTTTAGTCATTTATGCACCTAATGTCATGGTAACATGGGCTGTTTTAGAAGAAATCAGGAAACAAGGAAAGTCAATAGGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

295

Amino Acids

32.0

Weight (kDa)

9.58

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AciI	CCGC	1 cut(s)	741
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	2 cut(s)	101, 174
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	3 cut(s)	125, 527, 784
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	75, 221
AjnI	CCWGG	1 cut(s)	732
AluBI	AGCT	6 cut(s)	134, 389, 467, 521, 579, 729
AluI	AGCT	6 cut(s)	134, 389, 467, 521, 579, 729
Alw26I	GTCTC	2 cut(s)	309, 620
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	101, 174
ApeKI	GCWGC	6 cut(s)	134, 389, 404, 419, 695, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
Asp718I	GGTACC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	554, 767
AsuHPI	GGTGA	2 cut(s)	121, 471
AsuII	TTCGAA	1 cut(s)	718
AvaII	GGWCC	2 cut(s)	554, 767
BanI	GGYRCC	1 cut(s)	525
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	6 cut(s)	121, 376, 391, 431, 682, 710
BccI	CCATC	2 cut(s)	202, 353
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	734
BciVI	GTATCC	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	309, 620
BfaI	CTAG	2 cut(s)	522, 672
BfmI	CTRYAG	2 cut(s)	460, 696
BfuI	GTATCC	1 cut(s)	449
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	6 cut(s)	135, 390, 405, 420, 696, 699
BlsI	GCNGC	6 cut(s)	136, 391, 406, 421, 697, 700
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	2 cut(s)	554, 767
BmgT120I	GGNCC	2 cut(s)	554, 767
BmiI	GGNNCC	4 cut(s)	435, 527, 555, 769
BmrFI	CCNGG	1 cut(s)	734
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	795
BpmI	CTGGAG	2 cut(s)	183, 429
Bpu14I	TTCGAA	1 cut(s)	718
BpuEI	CTTGAG	2 cut(s)	58, 611
BsaJI	CCNNGG	3 cut(s)	80, 500, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	104, 168, 790
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	3 cut(s)	80, 500, 732
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	3 cut(s)	104, 168, 790
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	6 cut(s)	121, 376, 391, 431, 682, 710
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	2 cut(s)	103, 176
BshNI	GGYRCC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	309, 620
BsmBI	CGTCTC	1 cut(s)	309
BsmI	GAATGC	2 cut(s)	369, 776
BsnI	GGCC	2 cut(s)	103, 176
Bsp119I	TTCGAA	1 cut(s)	718
Bsp143I	GATC	1 cut(s)	476
BspACI	CCGC	1 cut(s)	741
BspANI	GGCC	2 cut(s)	103, 176
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	435, 527, 555, 769
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	104, 168, 790
BssECI	CCNNGG	3 cut(s)	80, 500, 732
BssMI	GATC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	84, 128
Bst6I	CTCTTC	2 cut(s)	9, 188
BstBI	TTCGAA	1 cut(s)	718
BstC8I	GCNNGC	4 cut(s)	214, 402, 597, 703
BstDEI	CTNAG	2 cut(s)	332, 580
BstDSI	CCRYGG	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	2 cut(s)	309, 620
BstMBI	GATC	1 cut(s)	476
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 410, 419, 518
BstNI	CCWGG	1 cut(s)	734
BstNSI	RCATGY	3 cut(s)	426, 452, 705
BstSCI	CCNGG	1 cut(s)	732
BstSFI	CTRYAG	2 cut(s)	460, 696
BstV1I	GCAGC	6 cut(s)	121, 376, 391, 431, 682, 710
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	103, 176
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	214, 402, 597, 703
Cfr13I	GGNCC	2 cut(s)	554, 767
CseI	GACGC	2 cut(s)	291, 665
Csp6I	GTAC	3 cut(s)	124, 526, 783
CviAII	CATG	6 cut(s)	28, 423, 449, 702, 826, 834
CviQI	GTAC	3 cut(s)	124, 526, 783
DdeI	CTNAG	2 cut(s)	332, 580
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
EaeI	YGGCCR	2 cut(s)	101, 174
Eam1104I	CTCTTC	2 cut(s)	9, 188
EarI	CTCTTC	2 cut(s)	9, 188
Eco130I	CCWWGG	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	554, 767
Eco57I	CTGAAG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoO109I	RGGNCCY	2 cut(s)	554, 767
EcoRII	CCWGG	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	6 cut(s)	31, 426, 452, 705, 829, 837
FatI	CATG	6 cut(s)	27, 422, 448, 701, 825, 833
Fnu4HI	GCNGC	6 cut(s)	135, 390, 405, 420, 696, 699
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	6 cut(s)	135, 390, 405, 420, 696, 699
FspBI	CTAG	2 cut(s)	522, 672
GluI	GCNGC	6 cut(s)	135, 390, 405, 420, 696, 699
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	183, 429
HaeIII	GGCC	2 cut(s)	103, 176
HgaI	GACGC	2 cut(s)	291, 665
Hin1II	CATG	6 cut(s)	31, 426, 452, 705, 829, 837
HinfI	GANTC	5 cut(s)	328, 632, 707, 737, 790
HphI	GGTGA	2 cut(s)	121, 471
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	333, 655
Hpy188III	TCNNGA	7 cut(s)	200, 262, 325, 383, 570, 762, 856
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	75, 330, 804
HpyCH4III	ACNGT	2 cut(s)	84, 128
HpyCH4V	TGCA	7 cut(s)	91, 419, 448, 494, 698, 776, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 410, 419, 518
HpyF3I	CTNAG	2 cut(s)	332, 580
Hsp92II	CATG	6 cut(s)	31, 426, 452, 705, 829, 837
KpnI	GGTACC	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	3 cut(s)	131, 410, 734
Lsp1109I	GCAGC	6 cut(s)	121, 376, 391, 431, 682, 710
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	2 cut(s)	522, 672
MaeIII	GTNAC	2 cut(s)	375, 829
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	5 cut(s)	17, 26, 175, 789, 860
MluCI	AATT	3 cut(s)	345, 471, 662
MnlI	CCTC	9 cut(s)	69, 72, 167, 191, 282, 558, 610, 758, 872
MseI	TTAA	1 cut(s)	747
MspR9I	CCNGG	1 cut(s)	734
Mva1269I	GAATGC	2 cut(s)	369, 776
MvaI	CCWGG	1 cut(s)	734
MwoI	GCNNNNNNNGC	4 cut(s)	173, 410, 419, 518
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	6 cut(s)	31, 426, 452, 705, 829, 837
NlaIV	GGNNCC	4 cut(s)	435, 527, 555, 769
NspI	RCATGY	3 cut(s)	426, 452, 705
NspV	TTCGAA	1 cut(s)	718
PaeI	GCATGC	1 cut(s)	705
PctI	GAATGC	2 cut(s)	369, 776
PfeI	GAWTC	5 cut(s)	328, 632, 707, 737, 790
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	136, 391, 406, 421, 697, 700
PpuMI	RGGWCCY	2 cut(s)	554, 767
Psp5II	RGGWCCY	2 cut(s)	554, 767
Psp6I	CCWGG	1 cut(s)	732
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	4 cut(s)	435, 527, 555, 769
PspPI	GGNCC	2 cut(s)	554, 767
PspPPI	RGGWCCY	2 cut(s)	554, 767
PstI	CTGCAG	1 cut(s)	700
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	125, 527, 784
RsaNI	GTAC	3 cut(s)	124, 526, 783
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	6 cut(s)	135, 390, 405, 420, 696, 699
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	2 cut(s)	554, 767
ScrFI	CCNGG	1 cut(s)	734
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	460, 696
SfuI	TTCGAA	1 cut(s)	718
SinI	GGWCC	2 cut(s)	554, 767
SmlI	CTYRAG	2 cut(s)	37, 626
SmoI	CTYRAG	2 cut(s)	37, 626
SphI	GCATGC	1 cut(s)	705
Sse9I	AATT	3 cut(s)	345, 471, 662
SsiI	CCGC	1 cut(s)	741
SspMI	CTAG	2 cut(s)	522, 672
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	84, 128
TaqI	TCGA	2 cut(s)	324, 718
TasI	AATT	3 cut(s)	345, 471, 662
TatI	WGTACW	1 cut(s)	782
TfiI	GAWTC	5 cut(s)	328, 632, 707, 737, 790
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TseI	GCWGC	6 cut(s)	134, 389, 404, 419, 695, 698
TspDTI	ATGAA	2 cut(s)	44, 286
TspGWI	ACGGA	1 cut(s)	608
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	554, 767
XagI	CCTNNNNNAGG	1 cut(s)	66
XceI	RCATGY	3 cut(s)	426, 452, 705
XspI	CTAG	2 cut(s)	522, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.