Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006401

Physical Location & Seq

Genomic Coordinates Forward (+)

12317579 .. 12328700

Gene Structure 11122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG128000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCAAAAGCCACTGGCAGAGGCGTCGATTGGAGATCAGCCGCCGTCAATTCCAAGAGCTACTCTCCAATTCCTCGGCCTTTCCTTTCCTTCTTCGCAGCCGATAAACAATAACCAGCCTAACTTCGTCGGCGATGAGAATATGCCCTTAGAAGGTGTCATTCAGTTCAACAAGCCTAGCTCCTCTTCTCGAATCATTAAATGGGGCCTTCTGAGAGGAAAAGTAGTTGCTAGAAATGATGGTATGCGACCAAATCTTTATCAGGAAGCTGCTACTGGTTTAATTGCTGGAGCAGCTGGAGCGTATCTCAGCTTTCCATTTGCTGTAGCTTGTCAACATAAGCAGGTTGAATCCATGGGACCAATTACAGAGCGTTGGAGAATCAGAAGTAAAAGTGTGTTACATATATTCAGATATGGAGGCCCTTGGTTGAAGAGAAGAGCTGGGTTAGGCATAGGTATGGTTGCAGCCTATAATCCAAGTCTCCATTATCTCATTGAATCTCATGGTTTTATTGAAGAGGATGCAAAATCTTGTACAATTTCTTTGCTTATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

186

Amino Acids

20.39

Weight (kDa)

9.55

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006401)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45501
malus_domestica	MD11G1004000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108941 RchiOBHm_Chr3g0481731 RchiOBHm_Chr5g0034121 RchiOBHm_Chr5g0080081 RchiOBHm_Chr5g0083321
rosa_laevigata	RLG00000037028
rosa_multiflora	Rmu_co8166610.1_g000001 Rmu_sc0001444.1_g000019 Rmu_sc0002245.1_g000052 Rmu_sc0004031.1_g000008 Rmu_sc0008014.1_g000008
rosa_roxburghii	Rroxscaffold_175G00431920 Rroxscaffold_1G00001190 Rroxscaffold_1G00015050 Rroxscaffold_1G00053210 Rroxscaffold_3G00246580
rosa_rugosa	Rorug05G0484200
rosa_samantha	Rh5AG128000 Rh5AG521900 Rh5AG533500 Rh5BG561100 Rh5CG583700
rosa_wichuraiana	Rw1G036530 Rw5G048410 Rw5G049930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	334
AciI	CCGC	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	5 cut(s)	169, 350, 433, 500, 518
AluBI	AGCT	7 cut(s)	59, 180, 269, 296, 312, 329, 443
AluI	AGCT	7 cut(s)	59, 180, 269, 296, 312, 329, 443
Alw26I	GTCTC	1 cut(s)	488
AoxI	GGCC	3 cut(s)	76, 205, 421
ApeKI	GCWGC	4 cut(s)	97, 269, 293, 467
AspS9I	GGNCC	3 cut(s)	205, 359, 422
AvaII	GGWCC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	109, 256, 305, 479
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	2 cut(s)	177, 231
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	5 cut(s)	41, 98, 270, 294, 468
BlsI	GCNGC	5 cut(s)	42, 99, 271, 295, 469
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	205, 359, 422
BmiI	GGNNCC	2 cut(s)	206, 360
BmsI	GCATC	1 cut(s)	514
BplI	GAGNNNNNCTC	4 cut(s)	48, 80, 291, 323
BpmI	CTGGAG	2 cut(s)	309, 318
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	73, 354, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	18, 280
BseDI	CCNNGG	3 cut(s)	73, 354, 425
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	203, 322
BseNI	ACTGG	2 cut(s)	18, 280
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	109, 256, 305, 479
BseYI	CCCAGC	1 cut(s)	443
BshFI	GGCC	3 cut(s)	78, 207, 423
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	78, 207, 423
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	3 cut(s)	78, 207, 423
BspCNI	CTCAG	2 cut(s)	204, 321
BspLI	GGNNCC	2 cut(s)	206, 360
BspMI	ACCTGC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	18, 280
BssECI	CCNNGG	3 cut(s)	73, 354, 425
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	354, 425
Bst6I	CTCTTC	4 cut(s)	190, 428, 433, 513
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	148, 212, 308
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 299
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	109, 256, 305, 479
BsuRI	GGCC	3 cut(s)	78, 207, 423
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	205, 359, 422
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	2 cut(s)	355, 506
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	148, 212, 308
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	4 cut(s)	190, 428, 433, 513
EarI	CTCTTC	4 cut(s)	190, 428, 433, 513
Eco130I	CCWWGG	2 cut(s)	354, 425
Eco47I	GGWCC	1 cut(s)	359
EcoO109I	RGGNCCY	2 cut(s)	205, 422
EcoT14I	CCWWGG	2 cut(s)	354, 425
ErhI	CCWWGG	2 cut(s)	354, 425
FaeI	CATG	2 cut(s)	358, 509
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	2 cut(s)	354, 505
Fnu4HI	GCNGC	5 cut(s)	41, 98, 270, 294, 468
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	5 cut(s)	41, 98, 270, 294, 468
FspBI	CTAG	2 cut(s)	177, 231
GluI	GCNGC	5 cut(s)	41, 98, 270, 294, 468
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	2 cut(s)	309, 318
HaeIII	GGCC	3 cut(s)	78, 207, 423
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	358, 509
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HinfI	GANTC	4 cut(s)	192, 350, 381, 500
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	3 cut(s)	213, 386, 413
Hpy188III	TCNNGA	2 cut(s)	189, 263
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	2 cut(s)	28, 131
HpyAV	CCTTC	3 cut(s)	99, 146, 218
HpyCH4V	TGCA	3 cut(s)	4, 467, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 299
HpyF3I	CTNAG	3 cut(s)	148, 212, 308
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	358, 509
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	185, 290, 299
LpnPI	CCDG	7 cut(s)	128, 248, 261, 273, 282, 329, 429
Lsp1109I	GCAGC	4 cut(s)	109, 256, 305, 479
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	2 cut(s)	177, 231
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	84, 177, 445, 450, 530
MluCI	AATT	5 cut(s)	48, 68, 282, 363, 540
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	6 cut(s)	13, 83, 193, 209, 413, 514
MseI	TTAA	2 cut(s)	198, 281
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	293, 299
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	358, 509
NlaIV	GGNNCC	2 cut(s)	206, 360
NmeAIII	GCCGAG	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	192, 350, 381, 500
PkrI	GCNGC	5 cut(s)	42, 99, 271, 295, 469
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	206, 360
PspPI	GGNCC	3 cut(s)	205, 359, 422
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	198, 281
SatI	GCNGC	5 cut(s)	41, 98, 270, 294, 468
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	3 cut(s)	205, 359, 422
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	48, 68, 282, 363, 540
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	177, 231
StyI	CCWWGG	2 cut(s)	354, 425
TaqI	TCGA	2 cut(s)	26, 190
TasI	AATT	5 cut(s)	48, 68, 282, 363, 540
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	4 cut(s)	192, 350, 381, 500
Tru1I	TTAA	2 cut(s)	198, 281
Tru9I	TTAA	2 cut(s)	198, 281
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	4 cut(s)	97, 269, 293, 467
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	359
XspI	CTAG	2 cut(s)	177, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.