Rroxscaffold_1G00015050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006401
Physical Location & Seq
Forward (+)
18685994 .. 18697212
11219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015050.1

Sequence Viewer

Length: 252 bp
ATGATGCTTAAGAATCCGGCATGCAAGGATCAACGAACTTTTCACAAAAGTTCTTGCAATGTTTATCGTGGGGCATACAAAATATTAGCTCGACAAGGATTGTTTGGTGGAAGTGAGTCCTTTTTGGATGCAAAGCGTCGTCTATCGAGGCGCCGTCCGATGAAGATCGATTGTAGGGAACCGTCGTGTGAAGGGCTCGGCAGCATGGCGCATAGCATGTCGGCGGCTGTCGACGCATTAGTTGTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.21

Weight (kDa)

9.87

Isoelectric Point (pI)

70.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 231
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 151
AflII CTTAAG 1 cut(s) 8
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AlwI GGATC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 201
AspLEI GCGC 2 cut(s) 153, 211
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 154
BfrI CTTAAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 202, 225
BlsI GCNGC 2 cut(s) 203, 226
BmiI GGNNCC 2 cut(s) 152, 180
BmsI GCATC 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 168
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 164
BseMI GCAATG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 28, 165
BspACI CCGC 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 152, 180
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 64
BssMI GATC 2 cut(s) 28, 165
BssNI GRCGYC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 211
BstKTI GATC 2 cut(s) 31, 168
BstMBI GATC 2 cut(s) 28, 165
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 2 cut(s) 24, 220
BstV1I GCAGC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 2 cut(s) 153, 211
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 2 cut(s) 125, 242
CviAII CATG 3 cut(s) 21, 205, 217
CviJI RGCY 3 cut(s) 89, 196, 227
CviKI_1 RGCY 3 cut(s) 89, 196, 227
DinI GGCGCC 1 cut(s) 152
DpnI GATC 2 cut(s) 30, 167
DpnII GATC 2 cut(s) 28, 165
Eco24I GRGCYC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 198
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
FaeI CATG 3 cut(s) 24, 208, 220
FaiI YATR 5 cut(s) 22, 76, 206, 213, 218
FatI CATG 3 cut(s) 20, 204, 216
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 202, 225
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 202, 225
GlaI GCGC 2 cut(s) 152, 210
GluI GCNGC 2 cut(s) 202, 225
HaeII RGCGCY 1 cut(s) 154
HapII CCGG 1 cut(s) 17
HgaI GACGC 2 cut(s) 125, 242
HhaI GCGC 2 cut(s) 153, 211
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 3 cut(s) 24, 208, 220
Hin6I GCGC 2 cut(s) 151, 209
HinP1I GCGC 2 cut(s) 151, 209
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 13, 116
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 3 cut(s) 141, 187, 236
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 24, 57, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 3 cut(s) 24, 208, 220
HspAI GCGC 2 cut(s) 151, 209
KasI GGCGCC 1 cut(s) 150
Kzo9I GATC 2 cut(s) 28, 165
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 118
MalI GATC 2 cut(s) 30, 167
MboI GATC 2 cut(s) 28, 165
MboII GAAGA 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 198
Mly113I GGCGCC 1 cut(s) 151
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 1 cut(s) 141
MseI TTAA 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 151
NdeII GATC 2 cut(s) 28, 165
NlaIII CATG 3 cut(s) 24, 208, 220
NlaIV GGNNCC 2 cut(s) 152, 180
NmeAIII GCCGAG 1 cut(s) 177
NspI RCATGY 2 cut(s) 24, 220
PaeI GCATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 203, 226
PleI GAGTC 1 cut(s) 124
PluTI GGCGCC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 152, 180
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 202, 225
Sau3AI GATC 2 cut(s) 28, 165
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 198
SetI ASST 1 cut(s) 91
SfaNI GCATC 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SphI GCATGC 1 cut(s) 24
SsiI CCGC 1 cut(s) 224
SspDI GGCGCC 1 cut(s) 150
SspI AATATT 1 cut(s) 84
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 4 cut(s) 91, 146, 168, 231
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 176
Vha464I CTTAAG 1 cut(s) 8
XceI RCATGY 2 cut(s) 24, 220
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.