Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Reverse (-)

6923808 .. 6924371

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGGCATCTATCCAGCAGTGGAGGGATTTCTTTGATGCTGCACCGAACAAATCCACCATCTTTGATGTCCTCGACCAAGCGATCACCGTCGCCGCCTCTGATTTCCCCGAAGAATTCAGGGGGACTGATGGGAAATCAGAAACTGAGTCGGGTCCGGTCGAGGCTCCACCAAGGAATATAATCCGCATCAAGCTCCCATCATGGTATAAGGCGCCTGCCAAACCGTCCTCTGTTGTTGTTGATCAAGTAGTTAAAGAGATCATCAAGACGAAGCCGTTATTGGATGAGGAGGCCAAGCTTGAAGCAACAAAGCGAAAGATCCATGATCGGTATGAGCAAATTGAAAACAACAAGAGGCAAAAGAGGATTCAGGTCCTGGACTATGTTCCAAAACAGGAGTTCAAGAAGACCAGTACTGCTCAACAACAAGGGAAGAAAGCTGGAAACCATTGTCGAAAACGGGTGGCGAAAAACCTTGGCTTTCAAAGTTTGCACAACAGGCTTGTCAGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

173

Amino Acids

19.58

Weight (kDa)

9.58

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	3 cut(s)	5, 96, 187
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	305, 347, 406, 488
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	3 cut(s)	196, 301, 443
AluI	AGCT	3 cut(s)	196, 301, 443
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	2 cut(s)	146, 379
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	155, 376
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	155, 376
BanI	GGYRCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	3 cut(s)	68, 125, 208
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	3 cut(s)	6, 42, 96
BlsI	GCNGC	3 cut(s)	7, 43, 97
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	155, 376
BmgT120I	GGNCC	2 cut(s)	155, 376
BmiI	GGNNCC	3 cut(s)	156, 168, 216
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	3 cut(s)	17, 28, 198
BpiI	GAAGAC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	173, 478
BsaWI	WCCGGW	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	173, 478
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	5 cut(s)	84, 244, 261, 321, 328
BspACI	CCGC	3 cut(s)	5, 96, 187
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	156, 168, 216
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	173, 478
BssMI	GATC	5 cut(s)	84, 244, 261, 321, 328
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	173, 478
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	91, 228
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	5 cut(s)	87, 247, 264, 324, 331
BstMBI	GATC	5 cut(s)	84, 244, 261, 321, 328
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	502
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	2 cut(s)	146, 379
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	155, 376
Csp6I	GTAC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	2 cut(s)	204, 326
CviJI	RGCY	8 cut(s)	167, 196, 277, 296, 301, 443, 483, 505
CviKI_1	RGCY	8 cut(s)	167, 196, 277, 296, 301, 443, 483, 505
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	5 cut(s)	86, 246, 263, 323, 330
DpnII	GATC	5 cut(s)	84, 244, 261, 321, 328
Eco130I	CCWWGG	2 cut(s)	173, 478
Eco47I	GGWCC	2 cut(s)	155, 376
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	173, 478
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	173, 478
FaeI	CATG	2 cut(s)	207, 329
FaiI	YATR	6 cut(s)	182, 205, 210, 327, 336, 387
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	203, 325
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	6, 42, 96
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	6, 42, 96
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	3 cut(s)	6, 42, 96
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	207, 329
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	149, 370
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	103, 142
Hpy188III	TCNNGA	2 cut(s)	268, 406
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	91, 228
HpyCH4V	TGCA	2 cut(s)	44, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	502
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	207, 329
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	84, 244, 261, 321, 328
LmnI	GCTCC	2 cut(s)	172, 201
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	17, 28, 198
MalI	GATC	5 cut(s)	86, 246, 263, 323, 330
MboI	GATC	5 cut(s)	84, 244, 261, 321, 328
MboII	GAAGA	3 cut(s)	125, 421, 448
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	2 cut(s)	116, 342
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	18, 83, 109, 157, 241, 283, 286, 351, 360
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	502
NarI	GGCGCC	1 cut(s)	215
NdeII	GATC	5 cut(s)	84, 244, 261, 321, 328
NlaIII	CATG	2 cut(s)	207, 329
NlaIV	GGNNCC	3 cut(s)	156, 168, 216
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	3 cut(s)	7, 43, 97
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	156, 168, 216
PspPI	GGNCC	2 cut(s)	155, 376
PspPPI	RGGWCCY	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	146, 379
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	6, 42, 96
Sau3AI	GATC	5 cut(s)	84, 244, 261, 321, 328
Sau96I	GGNCC	2 cut(s)	155, 376
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	5 cut(s)	198, 303, 378, 445, 480
SfaNI	GCATC	3 cut(s)	17, 28, 198
SfoI	GGCGCC	1 cut(s)	216
SinI	GGWCC	2 cut(s)	155, 376
Sse9I	AATT	2 cut(s)	116, 342
SsiI	CCGC	3 cut(s)	5, 96, 187
SspDI	GGCGCC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	173, 478
TaaI	ACNGT	2 cut(s)	91, 228
TaqI	TCGA	3 cut(s)	75, 162, 457
TasI	AATT	2 cut(s)	116, 342
TatI	WGTACW	1 cut(s)	416
TauI	GCSGC	2 cut(s)	8, 98
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	1 cut(s)	41
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	155, 376
XapI	RAATTY	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.