Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Reverse (-)

42246459 .. 42247118

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTGCGCCGTCGCTCCAGTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTTGATATTCTCGACCACGCCGTCACCGTCGCCGCCTCTGATTTCCCGGAGGAGTTCACTCGCCAGAGGACTCGAATTCTCGATCTCATTCAAGGTTTGGGCGGCGGTTCTGATCTAGGGTTTCGTGCTGGTGCTGCATCTGAAGGTACCGGGTCCGATCCAAAGGCTGAGCAGCCTTCAAAGCCATCGCTCAAAATACGCTTAAAGATCGTGAAGCGAAATGTTGATGGTACCTTGATCGAACCCAGTTCGCGAAATGTTGATGGTACCTTGATCGAACCCAGTTCTGGTTCAGATGAAGCGAAATTGATCAAGCCCTGTTCTCATCTGATCGAGCCCCCACCCTGTGTTGCTGATCAATCTACATCGATCATGCCAAAGCCGTGTTTGGATGAAGCGGCAATTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGCTTCATGATCGATATCAAGAAATTGAGAACAATAAGAGGCAGAGGAGGATACAAGTCTTAAACTATCTTCCCAACCAAGACTTCAAGATTCGATGCCCTGCTGCCACTGCTAAACCCAGACTTGGAAACCATTGGAAACCAGTACGAAAAATCAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

219

Amino Acids

24.31

Weight (kDa)

9.32

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc65I	GGTACC	3 cut(s)	209, 293, 329
AccB1I	GGYRCC	3 cut(s)	209, 293, 329
AccII	CGCG	1 cut(s)	316
AciI	CCGC	4 cut(s)	96, 165, 168, 461
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	2 cut(s)	225, 464
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	5 cut(s)	23, 211, 295, 331, 642
AfiI	CCNNNNNNNGG	2 cut(s)	350, 620
AgsI	TTSAA	3 cut(s)	155, 243, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	2 cut(s)	478, 499
AluI	AGCT	2 cut(s)	478, 499
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	4 cut(s)	5, 197, 235, 599
ApoI	RAATTY	1 cut(s)	138
Asp718I	GGTACC	3 cut(s)	209, 293, 329
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	216
AsuC2I	CCSGG	2 cut(s)	110, 214
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	216
BanI	GGYRCC	3 cut(s)	209, 293, 329
BanII	GRGCYC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	184, 247, 586
BccI	CCATC	3 cut(s)	256, 284, 320
BceAI	ACGGC	2 cut(s)	68, 430
BciVI	GTATCC	1 cut(s)	540
BclI	TGATCA	2 cut(s)	372, 418
BcnI	CCSGG	2 cut(s)	110, 214
BfaI	CTAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	7 cut(s)	6, 96, 166, 198, 236, 462, 600
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	7 cut(s)	7, 97, 167, 199, 237, 463, 601
BmcAI	AGTACT	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	110, 214
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	4 cut(s)	211, 217, 295, 331
BmrFI	CCNGG	2 cut(s)	110, 214
BmrI	ACTGGG	2 cut(s)	303, 339
BmsI	GCATC	2 cut(s)	209, 581
BmuI	ACTGGG	2 cut(s)	303, 339
BpmI	CTGGAG	1 cut(s)	46
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuMI	CCSGG	2 cut(s)	110, 214
Bsa29I	ATCGAT	2 cut(s)	431, 508
BsaBI	GATNNNNATC	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 620
Bse1I	ACTGG	5 cut(s)	19, 29, 309, 345, 638
Bse8I	GATNNNNATC	1 cut(s)	510
BseCI	ATCGAT	2 cut(s)	431, 508
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	350, 620
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	5 cut(s)	19, 29, 309, 345, 638
BseRI	GAGGAG	2 cut(s)	128, 556
BseXI	GCAGC	3 cut(s)	184, 247, 586
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	3 cut(s)	209, 293, 329
BshVI	ATCGAT	2 cut(s)	431, 508
BsiSI	CCGG	2 cut(s)	110, 213
BslI	CCNNNNNNNGG	2 cut(s)	350, 620
BsnI	GGCC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp68I	TCGCGA	1 cut(s)	316
BspACI	CCGC	4 cut(s)	96, 165, 168, 461
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	2 cut(s)	431, 508
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	4 cut(s)	211, 217, 295, 331
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	3 cut(s)	209, 293, 329
BsrI	ACTGG	5 cut(s)	19, 29, 309, 345, 638
Bst4CI	ACNGT	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 244, 470, 605
BstSCI	CCNGG	2 cut(s)	108, 212
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	184, 247, 586
Bsu15I	ATCGAT	2 cut(s)	431, 508
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	485
BsuTUI	ATCGAT	2 cut(s)	431, 508
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	2 cut(s)	42, 603
BtsIMutI	CAGTG	2 cut(s)	42, 603
BtuMI	TCGCGA	1 cut(s)	316
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	216
ClaI	ATCGAT	2 cut(s)	431, 508
Csp6I	GTAC	5 cut(s)	22, 210, 294, 330, 641
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	2 cut(s)	436, 503
CviQI	GTAC	5 cut(s)	22, 210, 294, 330, 641
DdeI	CTNAG	1 cut(s)	231
DraIII	CACNNNGTG	1 cut(s)	410
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	225, 464
EcoRI	GAATTC	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	2 cut(s)	439, 506
FaiI	YATR	3 cut(s)	437, 504, 658
FatI	CATG	2 cut(s)	435, 502
FbaI	TGATCA	2 cut(s)	372, 418
Fnu4HI	GCNGC	7 cut(s)	6, 96, 166, 198, 236, 462, 600
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	7 cut(s)	6, 96, 166, 198, 236, 462, 600
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	7 cut(s)	6, 96, 166, 198, 236, 462, 600
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	2 cut(s)	110, 213
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	439, 506
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	2 cut(s)	476, 497
HinfI	GANTC	2 cut(s)	133, 586
HpaII	CCGG	2 cut(s)	110, 213
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	7 cut(s)	103, 175, 205, 220, 358, 393, 653
Hpy188III	TCNNGA	7 cut(s)	74, 143, 274, 315, 503, 515, 583
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	16, 95
HpyAV	CCTTC	2 cut(s)	200, 249
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	47, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 244, 470, 605
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	439, 506
HspAI	GCGC	1 cut(s)	8
KpnI	GGTACC	3 cut(s)	213, 297, 333
Ksp22I	TGATCA	2 cut(s)	372, 418
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	3 cut(s)	184, 247, 586
LweI	GCATC	2 cut(s)	209, 581
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	557
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	138, 368, 465, 519
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	21, 106, 109, 123, 463, 528, 534, 537
MseI	TTAA	2 cut(s)	266, 557
MspI	CCGG	2 cut(s)	110, 213
MspR9I	CCNGG	2 cut(s)	110, 214
MunI	CAATTG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	197, 244, 470, 605
NciI	CCSGG	2 cut(s)	110, 214
NlaIII	CATG	2 cut(s)	439, 506
NlaIV	GGNNCC	4 cut(s)	211, 217, 295, 331
NmuCI	GTSAC	1 cut(s)	85
NruI	TCGCGA	1 cut(s)	316
PagI	TCATGA	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 87
PfeI	GAWTC	1 cut(s)	586
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	7 cut(s)	7, 97, 167, 199, 237, 463, 601
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	4 cut(s)	211, 217, 295, 331
PspPI	GGNCC	1 cut(s)	216
RruI	TCGCGA	1 cut(s)	316
RsaI	GTAC	5 cut(s)	23, 211, 295, 331, 642
RsaNI	GTAC	5 cut(s)	22, 210, 294, 330, 641
SaqAI	TTAA	2 cut(s)	266, 557
SatI	GCNGC	7 cut(s)	6, 96, 166, 198, 236, 462, 600
Sau96I	GGNCC	1 cut(s)	216
ScaI	AGTACT	1 cut(s)	23
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	110, 214
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	6 cut(s)	160, 211, 299, 335, 480, 501
SfaNI	GCATC	2 cut(s)	209, 581
SinI	GGWCC	1 cut(s)	216
Sse9I	AATT	4 cut(s)	138, 368, 465, 519
SsiI	CCGC	4 cut(s)	96, 165, 168, 461
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	108, 212
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	9 cut(s)	75, 136, 144, 303, 339, 396, 431, 508, 589
TasI	AATT	4 cut(s)	138, 368, 465, 519
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	3 cut(s)	98, 168, 464
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	266, 557
Tru9I	TTAA	2 cut(s)	266, 557
TscAI	CASTG	2 cut(s)	49, 610
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	4 cut(s)	5, 197, 235, 599
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	375, 471, 491
TspRI	CASTG	2 cut(s)	49, 610
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	138
XspI	CTAG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.