Rh1BG111500

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005912
Physical Location & Seq
Forward (+)
19050235 .. 19057871
7637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG111500.1

Sequence Viewer

Length: 315 bp
ATGGCAAATTCCATTTTTGTACTGAAAACAGAGTCGCTCCAGTACTGGAGGGACTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATATTCTCGACCACGCCGTCACCGTCGCCGCCTCTGATTTCCCGGAGGAGTTCACTCACCAGAGGACTCGAATTCTCGATTCGATTCAACGTTTGGGTTCTGATCTAGGGTTTTGTGCTGGTGCTGCATCTGAAGGTACCGGGTCCGATCCAAAGGCTGAGCAGCCTTCAAAGCCATCTCTCAAAATACGCATAAAGATCGTGAAGCGAAATATGAAGCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med26

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

8.89

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 1 cut(s) 117
AclI AACGTT 1 cut(s) 178
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 2 cut(s) 7, 159
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 3 cut(s) 21, 44, 226
AgsI TTSAA 2 cut(s) 176, 258
AlwI GGATC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 212, 250
ApoI RAATTY 2 cut(s) 7, 159
Asp718I GGTACC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 2 cut(s) 131, 229
AsuHPI GGTGA 2 cut(s) 100, 137
AvaII GGWCC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 199, 262
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BcnI CCSGG 2 cut(s) 131, 229
BfaI CTAG 1 cut(s) 194
BisI GCNGC 3 cut(s) 117, 213, 251
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 3 cut(s) 118, 214, 252
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 2 cut(s) 131, 229
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 226, 232
BmrFI CCNGG 2 cut(s) 131, 229
BmsI GCATC 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 23, 67
Bpu1102I GCTNAGC 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 131, 229
Bse1I ACTGG 2 cut(s) 40, 50
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 40, 50
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 199, 262
BshNI GGYRCC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 131, 228
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 190, 235, 285
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 226, 232
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 40, 50
BssMI GATC 3 cut(s) 190, 235, 285
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 3 cut(s) 193, 238, 288
BstMBI GATC 3 cut(s) 190, 235, 285
BstMWI GCNNNNNNNGC 2 cut(s) 212, 259
BstSCI CCNGG 2 cut(s) 129, 227
BstV1I GCAGC 2 cut(s) 199, 262
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 20, 43, 225
CviJI RGCY 3 cut(s) 245, 253, 262
CviKI_1 RGCY 3 cut(s) 245, 253, 262
CviQI GTAC 3 cut(s) 20, 43, 225
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 192, 237, 287
DpnII GATC 3 cut(s) 190, 235, 285
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 159
FaiI YATR 2 cut(s) 281, 302
FaqI GGGAC 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 117, 213, 251
Fsp4HI GCNGC 3 cut(s) 117, 213, 251
FspBI CTAG 1 cut(s) 194
GluI GCNGC 3 cut(s) 117, 213, 251
GsuI CTGGAG 2 cut(s) 23, 67
HapII CCGG 2 cut(s) 131, 228
HinfI GANTC 4 cut(s) 32, 154, 167, 172
HpaII CCGG 2 cut(s) 131, 228
HphI GGTGA 2 cut(s) 100, 137
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 4 cut(s) 124, 190, 220, 235
Hpy188III TCNNGA 3 cut(s) 95, 164, 289
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 215, 264
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 68, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 259
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 178
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 3 cut(s) 190, 235, 285
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 31, 53, 144, 161, 192, 241
Lsp1109I GCAGC 2 cut(s) 199, 262
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 192, 237, 287
MboI GATC 3 cut(s) 190, 235, 285
MluCI AATT 3 cut(s) 7, 159, 310
MlyI GAGTC 2 cut(s) 41, 148
MnlI CCTC 4 cut(s) 42, 127, 130, 144
MspI CCGG 2 cut(s) 131, 228
MspR9I CCNGG 2 cut(s) 131, 229
MwoI GCNNNNNNNGC 2 cut(s) 212, 259
NciI CCSGG 2 cut(s) 131, 229
NdeII GATC 3 cut(s) 190, 235, 285
NlaIV GGNNCC 2 cut(s) 226, 232
NmuCI GTSAC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 3 cut(s) 93, 102, 108
PfeI GAWTC 2 cut(s) 167, 172
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 3 cut(s) 118, 214, 252
PleI GAGTC 2 cut(s) 40, 148
PpsI GAGTC 2 cut(s) 40, 148
Psp1406I AACGTT 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 226, 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 3 cut(s) 21, 44, 226
RsaNI GTAC 3 cut(s) 20, 43, 225
SatI GCNGC 3 cut(s) 117, 213, 251
Sau3AI GATC 3 cut(s) 190, 235, 285
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 41, 148
ScrFI CCNGG 2 cut(s) 131, 229
SetI ASST 2 cut(s) 181, 226
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 1 cut(s) 231
Sse9I AATT 3 cut(s) 7, 159, 310
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 129, 227
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 181
TaqI TCGA 5 cut(s) 87, 96, 157, 165, 170
TasI AATT 3 cut(s) 7, 159, 310
TatI WGTACW 2 cut(s) 19, 42
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 167, 172
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 212, 250
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 2 cut(s) 7, 159
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.