Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Forward (+)

20975326 .. 20976923

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0120100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTTCAGGAACATGGAGTGCTCAATATTCAAAGGATATTGTTGCTGATAATGAGTACGATAGTGTTATTGGAATTAAAAAAGAATATCACAACGAGGAGGGATCTGATTCAGTTCAAAATCAAACCCTAGAATTGGATCCAAACCAAACCCCTCAATCCCATCTAGAAAAGCTTTCTTTTTTGATCTTGAAGCCTGCTTTTGCAATTCTGGTTGATCATGACCAAAAATGCTTTCTCTTGTTGATTTGTGGAACCCATAGTATCAAGGACACTTTAAAAGAGGCAACAGGGGCTGTTGTACCTTTCCATCACACTGCTTGTATGACATGGGAATTGGCAGAATCAGGCGCTAATTTTATTACTTCTGTTGTTAATGGTGCTGACTTGGTGCCCACCTTCTCCGCTGCATCAGCGGATGGCAGCAAATCCTCTGTCCCCAATTCAGATGGGGATAGAATGAAGGGACAGGGTGGTGATAGGGGAATGGGGACAGAAGATTTCAGTCCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

171

Amino Acids

18.32

Weight (kDa)

4.69

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	2 cut(s)	405, 416
AclWI	GGATC	3 cut(s)	112, 134, 147
AfaI	GTAC	2 cut(s)	59, 303
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	33, 119, 193
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	112, 134, 147
AlwNI	CAGNNNCTG	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	407, 423
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	394, 435
BccI	CCATC	4 cut(s)	171, 318, 413, 443
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	510
BfaI	CTAG	2 cut(s)	131, 167
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	2 cut(s)	408, 424
BlsI	GCNGC	2 cut(s)	409, 425
Bme1390I	CCNGG	1 cut(s)	510
BmiI	GGNNCC	3 cut(s)	141, 256, 393
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	394, 435
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	4 cut(s)	422, 480, 492, 505
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	4 cut(s)	422, 480, 492, 505
Bsp1286I	GDGCHC	2 cut(s)	25, 396
Bsp143I	GATC	4 cut(s)	104, 139, 186, 217
BspACI	CCGC	2 cut(s)	405, 416
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	141, 256, 393
BspPI	GGATC	3 cut(s)	112, 134, 147
BspT107I	GGYRCC	1 cut(s)	391
BssMI	GATC	4 cut(s)	104, 139, 186, 217
BstC8I	GCNNGC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	4 cut(s)	107, 142, 189, 220
BstMBI	GATC	4 cut(s)	104, 139, 186, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 413
BstSCI	CCNGG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	394, 435
BstX2I	RGATCY	2 cut(s)	104, 139
BstYI	RGATCY	2 cut(s)	104, 139
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	58, 302
CviAII	CATG	3 cut(s)	15, 221, 330
CviJI	RGCY	3 cut(s)	175, 196, 296
CviKI_1	RGCY	3 cut(s)	175, 196, 296
CviQI	GTAC	2 cut(s)	58, 302
DpnI	GATC	4 cut(s)	106, 141, 188, 219
DpnII	GATC	4 cut(s)	104, 139, 186, 217
DraI	TTTAAA	1 cut(s)	279
FaeI	CATG	3 cut(s)	18, 224, 333
FaiI	YATR	5 cut(s)	16, 222, 261, 326, 331
FaqI	GGGAC	4 cut(s)	422, 480, 492, 505
FatI	CATG	3 cut(s)	14, 220, 329
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	408, 424
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	408, 424
FspBI	CTAG	2 cut(s)	131, 167
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	408, 424
HaeII	RGCGCY	1 cut(s)	354
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	18, 224, 333
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	110, 344
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	488
Hpy188I	TCNGA	2 cut(s)	109, 448
Hpy188III	TCNNGA	4 cut(s)	9, 167, 190, 221
HpyAV	CCTTC	2 cut(s)	409, 457
HpyCH4V	TGCA	2 cut(s)	206, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 413
Hsp92II	CATG	3 cut(s)	18, 224, 333
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	104, 139, 186, 217
LpnPI	CCDG	5 cut(s)	197, 210, 276, 333, 455
Lsp1109I	GCAGC	2 cut(s)	394, 435
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	131, 167
MalI	GATC	4 cut(s)	106, 141, 188, 219
MboI	GATC	4 cut(s)	104, 139, 186, 217
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	2 cut(s)	104, 139
MhlI	GDGCHC	2 cut(s)	25, 396
MluCI	AATT	6 cut(s)	75, 134, 207, 335, 355, 442
MnlI	CCTC	5 cut(s)	91, 94, 165, 277, 442
MseI	TTAA	3 cut(s)	78, 278, 375
MspA1I	CMGCKG	2 cut(s)	407, 416
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	293, 413
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	4 cut(s)	104, 139, 186, 217
NlaIII	CATG	3 cut(s)	18, 224, 333
NlaIV	GGNNCC	3 cut(s)	141, 256, 393
PagI	TCATGA	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	110, 344
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	2 cut(s)	409, 425
PspN4I	GGNNCC	3 cut(s)	141, 256, 393
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	104, 139
RsaI	GTAC	2 cut(s)	59, 303
RsaNI	GTAC	2 cut(s)	58, 302
SaqAI	TTAA	3 cut(s)	78, 278, 375
SatI	GCNGC	2 cut(s)	408, 424
Sau3AI	GATC	4 cut(s)	104, 139, 186, 217
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	25, 396
SetI	ASST	3 cut(s)	177, 307, 401
SfaNI	GCATC	1 cut(s)	419
Sse9I	AATT	6 cut(s)	75, 134, 207, 335, 355, 442
SsiI	CCGC	2 cut(s)	405, 416
SspI	AATATT	1 cut(s)	29
SspMI	CTAG	2 cut(s)	131, 167
StyD4I	CCNGG	1 cut(s)	508
TasI	AATT	6 cut(s)	75, 134, 207, 335, 355, 442
TfiI	GAWTC	2 cut(s)	110, 344
Tru1I	TTAA	3 cut(s)	78, 278, 375
Tru9I	TTAA	3 cut(s)	78, 278, 375
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	407, 423
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	2 cut(s)	131, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.