FvH4_7g13310

Expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005912
Physical Location & Seq
Forward (+)
11978718 .. 11979622
905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13310.t1

Sequence Viewer

Length: 561 bp
ATGGCGTCGTCTATCCAGCAATGGAGGGACTTCTTCGCCGCTGCACCGAACAAATCCACCGTTTTTGATGTCCTTGACCAAGCGATCTCCGTCGCCGCCTCTGATTTCCCCGAAGAATTCAGTCGCCGGAAGACTCAAATCCTCAATTCCATTCAAGCTGATGTAGGGGGGACTGGTGGGAAATTAGATTCAGAATCGGGTCCGGTCAAGGCTCCTCCACCAAGGAATATAGTCCGCATCAAGCTCCCATCATGGTATAAGGCGCCGGCCAAACCGTCCTCTGTTGTTGCTGATCAAGTAGTTAAACCGATCATCAAGCCCAAGCCGTTATTGGATGAGGATGCCAAGCTTGAAGCAACAAAGCGAAAGATCCATGATCGGTACGATGAAATTGAGAATAATAAGAGGCTGAAGAGGATCAAAGTCTTGGACTATGTTTCAAAACAAGAGTTGAAGACTACTGCTCAACAACAAGGGAAGAAAATTAGAAACCATTGTCAAAAACGGGTGGCCAAAAACCTTGGCTTTCAATGTTTGCCCAACAAGCCTGTCAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med26

Protein Analysis

187

Amino Acids

20.83

Weight (kDa)

9.82

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 3 cut(s) 39, 96, 235
AclWI GGATC 2 cut(s) 364, 425
AcoI YGGCCR 2 cut(s) 267, 510
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 431
AcyI GRCGYC 2 cut(s) 5, 263
AfaI GTAC 1 cut(s) 383
AgsI TTSAA 5 cut(s) 155, 353, 441, 454, 530
AluBI AGCT 3 cut(s) 158, 244, 349
AluI AGCT 3 cut(s) 158, 244, 349
AlwI GGATC 2 cut(s) 364, 425
AoxI GGCC 2 cut(s) 267, 510
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 512
BanI GGYRCC 1 cut(s) 262
BbsI GAAGAC 2 cut(s) 137, 461
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 310
BclI TGATCA 1 cut(s) 292
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 3 cut(s) 39, 42, 96
BlsI GCNGC 3 cut(s) 40, 43, 97
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 3 cut(s) 201, 213, 264
BmsI GCATC 2 cut(s) 246, 331
BpiI GAAGAC 2 cut(s) 137, 461
BsaHI GRCGYC 2 cut(s) 5, 263
BsaJI CCNNGG 2 cut(s) 221, 520
BsaWI WCCGGW 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 221, 520
BseGI GGATG 2 cut(s) 340, 346
BseMI GCAATG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 269, 512
BshNI GGYRCC 1 cut(s) 262
BsiSI CCGG 3 cut(s) 127, 203, 266
BslFI GGGAC 2 cut(s) 41, 184
BsmFI GGGAC 2 cut(s) 41, 184
BsnI GGCC 2 cut(s) 269, 512
Bsp143I GATC 6 cut(s) 84, 292, 309, 369, 376, 417
BspACI CCGC 3 cut(s) 39, 96, 235
BspANI GGCC 2 cut(s) 269, 512
BspLI GGNNCC 3 cut(s) 201, 213, 264
BspPI GGATC 2 cut(s) 364, 425
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 265
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 221, 520
BssMI GATC 6 cut(s) 84, 292, 309, 369, 376, 417
BssNI GRCGYC 2 cut(s) 5, 263
BssT1I CCWWGG 2 cut(s) 221, 520
Bst4CI ACNGT 2 cut(s) 61, 276
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 2 cut(s) 5, 263
BstC8I GCNNGC 1 cut(s) 267
BstF5I GGATG 2 cut(s) 340, 346
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 6 cut(s) 87, 295, 312, 372, 379, 420
BstMBI GATC 6 cut(s) 84, 292, 309, 369, 376, 417
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 2 cut(s) 137, 461
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 2 cut(s) 269, 512
BtsCI GGATG 2 cut(s) 340, 346
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 2 cut(s) 252, 374
CviQI GTAC 1 cut(s) 382
DinI GGCGCC 1 cut(s) 264
DpnI GATC 6 cut(s) 86, 294, 311, 371, 378, 419
DpnII GATC 6 cut(s) 84, 292, 309, 369, 376, 417
EaeI YGGCCR 2 cut(s) 267, 510
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 221, 520
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 221, 520
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 221, 520
FaeI CATG 2 cut(s) 255, 377
FaiI YATR 5 cut(s) 230, 253, 258, 375, 435
FaqI GGGAC 2 cut(s) 41, 184
FatI CATG 2 cut(s) 251, 373
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 39, 42, 96
FokI GGATG 2 cut(s) 347, 353
Fsp4HI GCNGC 3 cut(s) 39, 42, 96
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 39, 42, 96
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 2 cut(s) 269, 512
HapII CCGG 3 cut(s) 127, 203, 266
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 2 cut(s) 5, 263
Hin1II CATG 2 cut(s) 255, 377
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 133, 188, 194
HpaII CCGG 3 cut(s) 127, 203, 266
Hpy188I TCNGA 2 cut(s) 103, 193
Hpy99I CGWCG 2 cut(s) 10, 95
HpyCH4III ACNGT 2 cut(s) 61, 276
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
Hsp92I GRCGYC 2 cut(s) 5, 263
Hsp92II CATG 2 cut(s) 255, 377
HspAI GCGC 1 cut(s) 263
KasI GGCGCC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 6 cut(s) 84, 292, 309, 369, 376, 417
LmnI GCTCC 2 cut(s) 217, 249
LpnPI CCDG 5 cut(s) 29, 140, 159, 216, 279
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 2 cut(s) 246, 331
MalI GATC 6 cut(s) 86, 294, 311, 371, 378, 419
MboI GATC 6 cut(s) 84, 292, 309, 369, 376, 417
MboII GAAGA 6 cut(s) 25, 125, 142, 424, 466, 490
MflI RGATCY 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 5 cut(s) 116, 145, 182, 390, 483
MluNI TGGCCA 1 cut(s) 512
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 8 cut(s) 18, 109, 152, 225, 289, 331, 399, 408
Mox20I TGGCCA 1 cut(s) 512
MroNI GCCGGC 1 cut(s) 265
MscI TGGCCA 1 cut(s) 512
MseI TTAA 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 127, 203, 266
MwoI GCNNNNNNNGC 1 cut(s) 544
NaeI GCCGGC 1 cut(s) 267
NarI GGCGCC 1 cut(s) 263
NdeII GATC 6 cut(s) 84, 292, 309, 369, 376, 417
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 2 cut(s) 255, 377
NlaIV GGNNCC 3 cut(s) 201, 213, 264
PdiI GCCGGC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 188, 194
PkrI GCNGC 3 cut(s) 40, 43, 97
PleI GAGTC 1 cut(s) 127
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 201, 213, 264
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 369
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 39, 42, 96
Sau3AI GATC 6 cut(s) 84, 292, 309, 369, 376, 417
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 127
SetI ASST 4 cut(s) 160, 246, 351, 522
SfaNI GCATC 2 cut(s) 246, 331
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 1 cut(s) 200
Sse9I AATT 5 cut(s) 116, 145, 182, 390, 483
SsiI CCGC 3 cut(s) 39, 96, 235
SspDI GGCGCC 1 cut(s) 262
StyI CCWWGG 2 cut(s) 221, 520
TaaI ACNGT 2 cut(s) 61, 276
TasI AATT 5 cut(s) 116, 145, 182, 390, 483
TauI GCSGC 2 cut(s) 41, 98
TfiI GAWTC 2 cut(s) 188, 194
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.