Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Reverse (-)

8577826 .. 8585360

Gene Structure 7535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCGGCGGCGATCCAGAAACAAAGTCGCTCAAGTACTGGAGGGATTTCTTTGCCACTGCAAAGTGCAAACAACTCCACCATTTTCAATATTCTCGACCACGCCATCACCGTCGCCGCCTCTGATTTCCCGGAGGAGTTCACTCGCCAAAGGTCTCAAATTCTCGATTCCATTCAAGGTTTGGGCGGCGGTTCTGATCTAGGGTTTTGTGTTGCATCTGAAAGTACTGGGTCCGAACAAAAGGCTGAGCAGCAGCCTTCAAAGCCATCGCTCAAAATACGCATAAAGATCGTGAAGCGAAATGTTGACGGTACCTTGATCGAACCCAGTTCAGATGAAGCGAAACTGATCAAGCCCTGTTCTCATCTGATCGAGCCGAAACCATGTGTTGATAAAGTGGCGAAATTGATCAAGCCCACATCCTGTTTTGGTGAAGCTAAATCGATCAAGCCGAAGCCGTGTTTGTGTTTGGATGAAGCGGCATTTGAGGCAAATCTTCAGGCCACAAAGAGAAAGTTTCATGATCGATATCAAGAAATTGAGAACAATAAGAGGCAGAGGAGGATACAAGTCTTGAATTATCTTCCCAAGCAAGACTTCAAGATTCGATGCCCTGCCACTACTAAACCCAAACTTGGAAACCATTGGAAACCAATATGGTGGTTCAAGGAAGACAAAGTAGAGATAATTCGACGTAGAAACAAGCAAAGGCCACTGGTGTTGCATGCTATAAAGTGGCTCCGTACTGGCTGGCTTCATAACAGAAAATTAAATAAACAAATACGAAGTCATCTGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

267

Amino Acids

30.41

Weight (kDa)

9.9

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	6 cut(s)	5, 8, 117, 186, 189, 479
AclWI	GGATC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	4 cut(s)	37, 226, 313, 745
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	6 cut(s)	88, 176, 261, 577, 601, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	2 cut(s)	501, 710
ApeKI	GCWGC	2 cut(s)	250, 253
ApoI	RAATTY	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	772, 804
Asp718I	GGTACC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	100, 443
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	262, 265
BccI	CCATC	2 cut(s)	113, 274
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciVI	GTATCC	1 cut(s)	558
BclI	TGATCA	2 cut(s)	348, 408
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	7 cut(s)	6, 9, 117, 187, 251, 254, 480
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	7 cut(s)	7, 10, 118, 188, 252, 255, 481
BmcAI	AGTACT	2 cut(s)	37, 226
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	3 cut(s)	232, 313, 740
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	2 cut(s)	237, 321
BmsI	GCATC	2 cut(s)	224, 599
BmuI	ACTGGG	2 cut(s)	237, 321
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	131
Bsa29I	ATCGAT	2 cut(s)	443, 526
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	5 cut(s)	43, 232, 327, 720, 751
Bse8I	GATNNNNATC	1 cut(s)	528
BseCI	ATCGAT	2 cut(s)	443, 526
BseGI	GGATG	2 cut(s)	419, 478
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	5 cut(s)	43, 232, 327, 720, 751
BseRI	GAGGAG	2 cut(s)	149, 574
BseXI	GCAGC	2 cut(s)	262, 265
BshFI	GGCC	2 cut(s)	503, 712
BshNI	GGYRCC	1 cut(s)	311
BshVI	ATCGAT	2 cut(s)	443, 526
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	503, 712
Bso31I	GGTCTC	1 cut(s)	159
Bsp143I	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	6 cut(s)	5, 8, 117, 186, 189, 479
BspANI	GGCC	2 cut(s)	503, 712
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	2 cut(s)	443, 526
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	3 cut(s)	232, 313, 740
BspPI	GGATC	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	5 cut(s)	43, 232, 327, 720, 751
BssMI	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
Bst4CI	ACNGT	2 cut(s)	112, 311
BstC8I	GCNNGC	2 cut(s)	726, 752
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	419, 478
BstKTI	GATC	9 cut(s)	15, 199, 291, 321, 351, 372, 411, 447, 526
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 488
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	262, 265
BstV2I	GAAGAC	1 cut(s)	678
BstXI	CCANNNNNNTGG	1 cut(s)	660
Bsu15I	ATCGAT	2 cut(s)	443, 526
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	503, 712
BsuTUI	ATCGAT	2 cut(s)	443, 526
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	419, 478
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	56, 713
Cac8I	GCNNGC	2 cut(s)	726, 752
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	231
ClaI	ATCGAT	2 cut(s)	443, 526
Csp6I	GTAC	4 cut(s)	36, 225, 312, 744
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	3 cut(s)	384, 521, 725
CviQI	GTAC	4 cut(s)	36, 225, 312, 744
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	9 cut(s)	14, 198, 290, 320, 350, 371, 410, 446, 525
DpnII	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	482
EcoRV	GATATC	1 cut(s)	530
FaeI	CATG	3 cut(s)	387, 524, 728
FaiI	YATR	7 cut(s)	284, 385, 522, 658, 726, 731, 759
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	3 cut(s)	383, 520, 724
FbaI	TGATCA	2 cut(s)	348, 408
Fnu4HI	GCNGC	7 cut(s)	6, 9, 117, 187, 251, 254, 480
FokI	GGATG	2 cut(s)	406, 485
Fsp4HI	GCNGC	7 cut(s)	6, 9, 117, 187, 251, 254, 480
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	7 cut(s)	6, 9, 117, 187, 251, 254, 480
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	503, 712
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	3 cut(s)	387, 524, 728
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	167, 604
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	2 cut(s)	100, 443
Hpy166II	GTNNAC	2 cut(s)	141, 307
Hpy188I	TCNGA	7 cut(s)	124, 196, 220, 235, 334, 369, 795
Hpy188III	TCNNGA	8 cut(s)	16, 95, 164, 292, 521, 533, 574, 601
Hpy8I	GTNNAC	2 cut(s)	141, 307
Hpy99I	CGWCG	2 cut(s)	116, 696
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	2 cut(s)	112, 311
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	4 cut(s)	61, 68, 215, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 488
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	3 cut(s)	387, 524, 728
KpnI	GGTACC	1 cut(s)	315
Ksp22I	TGATCA	2 cut(s)	348, 408
Kzo9I	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	2 cut(s)	262, 265
LweI	GCATC	2 cut(s)	224, 599
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	694
MalI	GATC	9 cut(s)	14, 198, 290, 320, 350, 371, 410, 446, 525
MboI	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
MboII	GAAGA	3 cut(s)	488, 575, 683
MluCI	AATT	6 cut(s)	159, 404, 537, 577, 687, 767
MnlI	CCTC	7 cut(s)	35, 127, 130, 481, 546, 552, 555
MseI	TTAA	1 cut(s)	770
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	262, 488
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
NlaIII	CATG	3 cut(s)	387, 524, 728
NlaIV	GGNNCC	3 cut(s)	232, 313, 740
NspI	RCATGY	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	728
PagI	TCATGA	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 449
PfeI	GAWTC	2 cut(s)	167, 604
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	7 cut(s)	7, 10, 118, 188, 252, 255, 481
PspN4I	GGNNCC	3 cut(s)	232, 313, 740
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	4 cut(s)	37, 226, 313, 745
RsaNI	GTAC	4 cut(s)	36, 225, 312, 744
SaqAI	TTAA	1 cut(s)	770
SatI	GCNGC	7 cut(s)	6, 9, 117, 187, 251, 254, 480
Sau3AI	GATC	9 cut(s)	12, 196, 288, 318, 348, 369, 408, 444, 523
Sau96I	GGNCC	1 cut(s)	231
ScaI	AGTACT	2 cut(s)	37, 226
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	155, 181, 317, 439, 697
SfaNI	GCATC	2 cut(s)	224, 599
SinI	GGWCC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	6 cut(s)	159, 404, 537, 577, 687, 767
SsiI	CCGC	6 cut(s)	5, 8, 117, 186, 189, 479
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	112, 311
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	8 cut(s)	96, 165, 321, 372, 443, 526, 607, 691
TasI	AATT	6 cut(s)	159, 404, 537, 577, 687, 767
TatI	WGTACW	2 cut(s)	35, 224
TauI	GCSGC	5 cut(s)	8, 11, 119, 189, 482
TfiI	GAWTC	2 cut(s)	167, 604
Tru1I	TTAA	1 cut(s)	770
Tru9I	TTAA	1 cut(s)	770
TscAI	CASTG	2 cut(s)	63, 720
TseI	GCWGC	2 cut(s)	250, 253
TspDTI	ATGAA	4 cut(s)	351, 489, 509, 746
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	2 cut(s)	63, 720
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XspI	CTAG	1 cut(s)	200
ZrmI	AGTACT	2 cut(s)	37, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.