Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013866.1

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Forward (+)

13445 .. 14077

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013866.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggcggcggcgatccaggagaaaccagagtcgctccagtactggagggatttctttgccactgcaaacaactccaccattttcgatattctcgaccacgccatcaccgtcgccgtctctgatttcccggaggagttcactcgccagaggactcgaattctcgattcgattcaacgtttgggtttgggatcggatctagggatttgtgctggtgctgggtctgatcaaaaagctgagcagccttcaaagccatcgctcaaaatacacataaagatcgtgaagcgaaatgttgatggtaccctgatcgaacccagttcagatgaagcaaaattgatcgagccctgttctcatgatctgatcaagcccgcaccctgtgttggtgttggtgatcaagcaaaatcgatcaagccaaagcagccgtgtttggatgaagcggctattgaagcaaagcttcaggccacaaagagaaagctccgcgatcgatatcaagaaatcgagaaccataagaggcagaggaggattcaagtcttaaaccatcttcccaagcaagacttcaggattcgatgccctgctgccactgctaaacccaaacttggaaaccattggaaaccagtactaaaaatcagaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

210

Amino Acids

23.6

Weight (kDa)

9.4

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	1 cut(s)	477
AciI	CCGC	5 cut(s)	5, 8, 366, 434, 475
AclI	AACGTT	1 cut(s)	175
AclWI	GGATC	3 cut(s)	7, 196, 201
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	437, 538
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	41, 298, 615
AfiI	CCNNNNNNNGG	2 cut(s)	377, 593
AgsI	TTSAA	4 cut(s)	173, 246, 443, 524
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	3 cut(s)	233, 451, 472
AluI	AGCT	3 cut(s)	233, 451, 472
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	7, 196, 201
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	238, 415, 572
ApoI	RAATTY	1 cut(s)	156
Asp718I	GGTACC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	97, 398
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	250, 427, 559
BccI	CCATC	4 cut(s)	110, 259, 287, 543
BceAI	ACGGC	2 cut(s)	98, 403
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	3 cut(s)	223, 357, 388
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	6 cut(s)	6, 9, 239, 416, 435, 573
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	6 cut(s)	7, 10, 240, 417, 436, 574
BmcAI	AGTACT	2 cut(s)	41, 615
Bme1390I	CCNGG	2 cut(s)	17, 128
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	17, 128
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	20, 64
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	2 cut(s)	401, 481
BsaBI	GATNNNNATC	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 593
Bse1I	ACTGG	4 cut(s)	37, 47, 312, 611
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	17
BseCI	ATCGAT	2 cut(s)	401, 481
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	377, 593
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	4 cut(s)	37, 47, 312, 611
BseRI	GAGGAG	2 cut(s)	146, 529
BseXI	GCAGC	3 cut(s)	250, 427, 559
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	2 cut(s)	401, 481
BsiEI	CGRYCG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	377, 593
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	5 cut(s)	5, 8, 366, 434, 475
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	2 cut(s)	401, 481
BspFNI	CGCG	1 cut(s)	477
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	3 cut(s)	7, 196, 201
BspT107I	GGYRCC	1 cut(s)	296
BsrI	ACTGG	4 cut(s)	37, 47, 312, 611
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	477
BstMAI	GTCTC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	481
BstMWI	GCNNNNNNNGC	4 cut(s)	247, 415, 443, 578
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	15, 126
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	250, 427, 559
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	2 cut(s)	401, 481
BsuRI	GGCC	1 cut(s)	458
BsuTUI	ATCGAT	2 cut(s)	401, 481
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	2 cut(s)	60, 576
BtsIMutI	CAGTG	2 cut(s)	60, 576
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	349
ClaI	ATCGAT	2 cut(s)	401, 481
Csp6I	GTAC	3 cut(s)	40, 297, 614
CviAII	CATG	1 cut(s)	350
CviQI	GTAC	3 cut(s)	40, 297, 614
DdeI	CTNAG	1 cut(s)	234
DraIII	CACNNNGTG	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	437, 538
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	353
FaiI	YATR	4 cut(s)	269, 351, 504, 631
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 536, 568
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	3 cut(s)	223, 357, 388
Fnu4HI	GCNGC	6 cut(s)	6, 9, 239, 416, 435, 573
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	6 cut(s)	6, 9, 239, 416, 435, 573
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	6 cut(s)	6, 9, 239, 416, 435, 573
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	20, 64
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	6 cut(s)	29, 151, 164, 169, 520, 559
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	97, 398
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	6 cut(s)	121, 193, 223, 319, 357, 626
Hpy188III	TCNNGA	7 cut(s)	92, 161, 277, 350, 488, 496, 556
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	4 cut(s)	247, 415, 443, 578
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	300
Ksp22I	TGATCA	3 cut(s)	223, 357, 388
LmnI	GCTCC	2 cut(s)	39, 477
Lsp1109I	GCAGC	3 cut(s)	250, 427, 559
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	175
MboII	GAAGA	1 cut(s)	530
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	2 cut(s)	156, 329
MlyI	GAGTC	2 cut(s)	38, 145
MnlI	CCTC	6 cut(s)	39, 124, 141, 501, 507, 510
MseI	TTAA	1 cut(s)	530
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	17, 128
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	247, 415, 443, 578
NciI	CCSGG	1 cut(s)	128
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 105
PfeI	GAWTC	4 cut(s)	164, 169, 520, 559
PfoI	TCCNGGA	2 cut(s)	15, 126
PkrI	GCNGC	6 cut(s)	7, 10, 240, 417, 436, 574
Ple19I	CGATCG	1 cut(s)	481
PleI	GAGTC	2 cut(s)	37, 145
PpsI	GAGTC	2 cut(s)	37, 145
Psp1406I	AACGTT	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	193
PvuI	CGATCG	1 cut(s)	481
RsaI	GTAC	3 cut(s)	41, 298, 615
RsaNI	GTAC	3 cut(s)	40, 297, 614
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	6 cut(s)	6, 9, 239, 416, 435, 573
ScaI	AGTACT	2 cut(s)	41, 615
SchI	GAGTC	2 cut(s)	38, 145
ScrFI	CCNGG	2 cut(s)	17, 128
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	4 cut(s)	178, 235, 453, 474
SfaNI	GCATC	1 cut(s)	554
Sse9I	AATT	2 cut(s)	156, 329
SsiI	CCGC	5 cut(s)	5, 8, 366, 434, 475
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	15, 126
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	178
TasI	AATT	2 cut(s)	156, 329
TatI	WGTACW	2 cut(s)	39, 613
TauI	GCSGC	3 cut(s)	8, 11, 437
TfiI	GAWTC	4 cut(s)	164, 169, 520, 559
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	2 cut(s)	67, 583
TseI	GCWGC	3 cut(s)	238, 415, 572
TspDTI	ATGAA	2 cut(s)	336, 444
TspRI	CASTG	2 cut(s)	67, 583
XapI	RAATTY	1 cut(s)	156
XspI	CTAG	1 cut(s)	197
ZrmI	AGTACT	2 cut(s)	41, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.