Rroxscaffold_1G00063090

Expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005912
Physical Location & Seq
Forward (+)
85072465 .. 85073931
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063090.1

Sequence Viewer

Length: 615 bp
ATGGAAGACCAGGCCATCACCCTCGCCGCCTCCGATTTTCCGGAGGAGTTCAGTCGCCAAAGGAGTCGAATTCTCGGTTCGATTCAGGGTTTGGGCGGCGGTGATGATCGGCGCTCCGATCTAGGGTTTGGTACAGGATCTGAAACTGGGTCGGAACAAAAGGCTGAGCCTTCAAAGCCATCGCTCAAAGTACGCATAAAGATCGTGAAGCGAAACGTTGATGGTACCTTGATCAAACCCAGTTCAGATGAAGCTAAGCCGATCAAGCCCTCTTCAGATGAGAATAAGTCGATCAAGCCGGAAACGTGTGTTGATAAAGTGGCACTTGATCGAGCAAAAATGATCAAGCCCCCACCCTGTGTTGGTGAACCTAAATCGATCAAGCCGAAGCCGTATTTGGATGAAGCGGCATTTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGTTTCATGATCGATATGAAGAAATTGAGAACAGTAAGAGGCAGAGGAGGATACAAGTCTTGAGTTATCTTCCCAAGCAAGACTTCAAGATTGGATGCCGTCCTAGTACAAAACCACAGGGGAAGAAACTTGGAAACCATTTTCTGCAAGCCTCGCATAGGGTTCGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med26

Protein Analysis

204

Amino Acids

22.81

Weight (kDa)

9.7

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 4 cut(s) 27, 96, 99, 407
AclI AACGTT 1 cut(s) 216
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 2 cut(s) 258, 410
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 4 cut(s) 133, 192, 226, 550
AfiI CCNNNNNNNGG 3 cut(s) 123, 362, 600
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 2 cut(s) 174, 529
AjnI CCWGG 1 cut(s) 9
AjuI GAANNNNNNNTTGG 4 cut(s) 380, 412, 509, 541
AluBI AGCT 2 cut(s) 254, 424
AluI AGCT 2 cut(s) 254, 424
AlwI GGATC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 2 cut(s) 12, 429
ApoI RAATTY 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 10, 113, 377
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 3 cut(s) 23, 187, 215
BceAI ACGGC 2 cut(s) 376, 525
BcgI CGANNNNNNTGC 3 cut(s) 184, 218, 587
BciT130I CCWGG 1 cut(s) 11
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 2 cut(s) 231, 342
BfaI CTAG 2 cut(s) 122, 546
BfoI RGCGCY 1 cut(s) 115
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 3 cut(s) 27, 97, 408
BlpI GCTNAGC 2 cut(s) 165, 255
BlsI GCNGC 3 cut(s) 28, 98, 409
Bme1390I CCNGG 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 2 cut(s) 156, 234
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 2 cut(s) 156, 234
BpiI GAAGAC 1 cut(s) 12
Bpu1102I GCTNAGC 2 cut(s) 165, 255
BpuEI CTTGAG 1 cut(s) 523
Bsa29I ATCGAT 2 cut(s) 377, 454
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 362, 600
Bse1I ACTGG 2 cut(s) 151, 240
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 11
BseCI ATCGAT 2 cut(s) 377, 454
BseGI GGATG 2 cut(s) 406, 542
BseLI CCNNNNNNNGG 3 cut(s) 123, 362, 600
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 151, 240
BseRI GAGGAG 2 cut(s) 59, 502
BshFI GGCC 2 cut(s) 14, 431
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 2 cut(s) 377, 454
BsiSI CCGG 2 cut(s) 41, 299
BslI CCNNNNNNNGG 3 cut(s) 123, 362, 600
BsnI GGCC 2 cut(s) 14, 431
Bsp13I TCCGGA 1 cut(s) 40
Bsp1720I GCTNAGC 2 cut(s) 165, 255
BspACI CCGC 4 cut(s) 27, 96, 99, 407
BspANI GGCC 2 cut(s) 14, 431
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 2 cut(s) 377, 454
BspEI TCCGGA 1 cut(s) 40
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 151, 240
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 2 cut(s) 165, 255
BstENI CCTNNNNNAGG 1 cut(s) 598
BstF5I GGATG 2 cut(s) 406, 542
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstMWI GCNNNNNNNGC 4 cut(s) 175, 265, 416, 595
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 2 cut(s) 377, 454
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 2 cut(s) 14, 431
BsuTUI ATCGAT 2 cut(s) 377, 454
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 406, 542
Cac8I GCNNGC 1 cut(s) 591
CaiI CAGNNNCTG 1 cut(s) 140
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 114
ClaI ATCGAT 2 cut(s) 377, 454
Csp6I GTAC 4 cut(s) 132, 191, 225, 549
CviAII CATG 1 cut(s) 449
CviQI GTAC 4 cut(s) 132, 191, 225, 549
DdeI CTNAG 2 cut(s) 165, 255
DraIII CACNNNGTG 1 cut(s) 359
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 258, 410
EcoNI CCTNNNNNAGG 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 452
FaiI YATR 6 cut(s) 197, 450, 459, 600, 611, 613
FalI AAGNNNNNCTT 4 cut(s) 309, 341, 509, 541
FatI CATG 1 cut(s) 448
FbaI TGATCA 2 cut(s) 231, 342
Fnu4HI GCNGC 3 cut(s) 27, 97, 408
FokI GGATG 2 cut(s) 413, 549
Fsp4HI GCNGC 3 cut(s) 27, 97, 408
FspBI CTAG 2 cut(s) 122, 546
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 27, 97, 408
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 14, 431
HapII CCGG 2 cut(s) 41, 299
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 64, 82
HpaII CCGG 2 cut(s) 41, 299
HphI GGTGA 3 cut(s) 10, 113, 377
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 6 cut(s) 34, 118, 142, 154, 247, 277
Hpy188III TCNNGA 5 cut(s) 41, 205, 449, 502, 529
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 2 cut(s) 216, 305
HpyCH4V TGCA 1 cut(s) 589
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 265, 416, 595
HpyF3I CTNAG 2 cut(s) 165, 255
HpySE526I ACGT 2 cut(s) 216, 305
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 1 cut(s) 112
Kpn2I TCCGGA 1 cut(s) 40
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 2 cut(s) 231, 342
LmnI GCTCC 1 cut(s) 119
LweI GCATC 1 cut(s) 527
MaeI CTAG 2 cut(s) 122, 546
MaeII ACGT 2 cut(s) 216, 305
MboII GAAGA 5 cut(s) 17, 264, 473, 503, 577
MflI RGATCY 1 cut(s) 137
MluCI AATT 2 cut(s) 69, 465
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 9 cut(s) 32, 37, 40, 280, 409, 474, 480, 483, 604
MroI TCCGGA 1 cut(s) 40
MspI CCGG 2 cut(s) 41, 299
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 175, 265, 416, 595
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 1 cut(s) 226
PagI TCATGA 1 cut(s) 448
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 383
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 28, 98, 409
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 4 cut(s) 133, 192, 226, 550
RsaNI GTAC 4 cut(s) 132, 191, 225, 549
SatI GCNGC 3 cut(s) 27, 97, 408
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 11
SetI ASST 6 cut(s) 219, 230, 256, 308, 373, 426
SfaNI GCATC 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 2 cut(s) 69, 465
SsiI CCGC 4 cut(s) 27, 96, 99, 407
SspMI CTAG 2 cut(s) 122, 546
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 2 cut(s) 219, 308
TaqI TCGA 6 cut(s) 67, 80, 290, 331, 377, 454
TasI AATT 2 cut(s) 69, 465
TatI WGTACW 1 cut(s) 548
TauI GCSGC 3 cut(s) 29, 99, 410
TfiI GAWTC 1 cut(s) 82
TspDTI ATGAA 4 cut(s) 264, 417, 437, 474
XagI CCTNNNNNAGG 1 cut(s) 598
XapI RAATTY 1 cut(s) 69
XspI CTAG 2 cut(s) 122, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.