Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Forward (+)

25825553 .. 25825771

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCGGCGGTGATCCCGTTTTCTTCCATGGCGGCGGTGATCCAGAAGAAAACAGAGTCGCTCCAGTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATATTCTCGACCACGCCATCACCGTCGCCGCCTCTGATTTCCTGGAGGAGTTCACTCGCCAGAGGACTCGAATTCTCGATTCGATTCAACGTTTGGGTTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

72

Amino Acids

8.14

Weight (kDa)

5.61

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 8, 32, 35, 141
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	2 cut(s)	7, 34
AcsI	RAATTY	1 cut(s)	183
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	153
AlwI	GGATC	2 cut(s)	7, 34
ApoI	RAATTY	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	22, 49, 124
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	217
BisI	GCNGC	3 cut(s)	6, 33, 141
BlsI	GCNGC	3 cut(s)	7, 34, 142
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	155
BpmI	CTGGAG	3 cut(s)	47, 91, 176
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	64, 74
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	64, 74
BseRI	GAGGAG	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	12, 39
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	5 cut(s)	5, 8, 32, 35, 141
BspPI	GGATC	2 cut(s)	7, 34
BsrI	ACTGG	2 cut(s)	64, 74
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	12, 39
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	15, 42
BstMBI	GATC	2 cut(s)	12, 39
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	1 cut(s)	216
CviKI_1	RGCY	1 cut(s)	216
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	2 cut(s)	14, 41
DpnII	GATC	2 cut(s)	12, 39
Eco130I	CCWWGG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	31
FaiI	YATR	1 cut(s)	29
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	6, 33, 141
Fsp4HI	GCNGC	3 cut(s)	6, 33, 141
FspBI	CTAG	1 cut(s)	217
GluI	GCNGC	3 cut(s)	6, 33, 141
GsuI	CTGGAG	3 cut(s)	47, 91, 176
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	4 cut(s)	56, 178, 191, 196
HphI	GGTGA	3 cut(s)	22, 49, 124
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	43, 119, 188
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	12, 39
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	55, 56, 77, 140, 167, 185
MaeI	CTAG	1 cut(s)	217
MaeII	ACGT	1 cut(s)	202
MalI	GATC	2 cut(s)	14, 41
MboI	GATC	2 cut(s)	12, 39
MboII	GAAGA	2 cut(s)	15, 58
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	65, 172
MnlI	CCTC	4 cut(s)	66, 151, 154, 168
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	12, 39
NlaIII	CATG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 132
PfeI	GAWTC	2 cut(s)	191, 196
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	7, 34, 142
PleI	GAGTC	2 cut(s)	64, 172
PpsI	GAGTC	2 cut(s)	64, 172
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	3 cut(s)	6, 33, 141
Sau3AI	GATC	2 cut(s)	12, 39
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	2 cut(s)	65, 172
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	1 cut(s)	205
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	5 cut(s)	5, 8, 32, 35, 141
SspMI	CTAG	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	5 cut(s)	111, 120, 181, 189, 194
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	3 cut(s)	8, 35, 143
TfiI	GAWTC	2 cut(s)	191, 196
TscAI	CASTG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	183
XspI	CTAG	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.