Rmu_sc0021925.1_g000001

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021925.1
OG0005912
Physical Location & Seq
Forward (+)
1 .. 389
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021925.1_g000001.1.cds

Sequence Viewer

Length: 389 bp
tgatcgaaccagcgaaattgatcgagccctgttctcatgatctgatcaagcccgccgcaccctgtgttggtgttggtgatcaagcaaaatggatcaagccctgttctcatgatctgatcaagcccgtcgcaccctgtgttggtgttggtgatcaagcaaaatcgatcaagccaaagcagccgtgtttggatgaagcggctattgaggccaagcttcaggccacaaagagaaagctccacgatcgatatcaagaaatcgagaaccataagaggcagaggaggatacaagtcttaaaccatcttcccaggcaagacttcaggattggtcgatgccctgctaaacccagacttggaaaccattggaaaccagtactaacaatcagaacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med26

Protein Analysis

128

Amino Acids

14.47

Weight (kDa)

9.69

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 53, 56, 196
AclWI GGATC 1 cut(s) 100
AcuI CTGAAG 2 cut(s) 199, 300
AdeI CACNNNGTG 2 cut(s) 64, 136
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 67, 139, 349
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 2 cut(s) 213, 234
AluI AGCT 2 cut(s) 213, 234
AlwI GGATC 1 cut(s) 100
AoxI GGCC 2 cut(s) 206, 218
ApeKI GCWGC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 88, 160
BanII GRGCYC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 275
BclI TGATCA 4 cut(s) 44, 78, 116, 150
BfuI GTATCC 1 cut(s) 275
BisI GCNGC 3 cut(s) 56, 178, 197
BlsI GCNGC 3 cut(s) 57, 179, 198
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 319
Bsa29I ATCGAT 2 cut(s) 163, 243
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 139, 349
Bse1I ACTGG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 2 cut(s) 163, 243
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 67, 139, 349
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 208, 220
BshVI ATCGAT 2 cut(s) 163, 243
BsiEI CGRYCG 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 67, 139, 349
BsnI GGCC 2 cut(s) 208, 220
Bsp1286I GDGCHC 1 cut(s) 29
BspACI CCGC 3 cut(s) 53, 56, 196
BspANI GGCC 2 cut(s) 208, 220
BspDI ATCGAT 2 cut(s) 163, 243
BspHI TCATGA 2 cut(s) 36, 108
BspPI GGATC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 177, 205
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 189
Bsu15I ATCGAT 2 cut(s) 163, 243
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 2 cut(s) 208, 220
BsuTUI ATCGAT 2 cut(s) 163, 243
BtsCI GGATG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 2 cut(s) 36, 108
ClaI ATCGAT 2 cut(s) 163, 243
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 37, 109
CviQI GTAC 1 cut(s) 370
DraIII CACNNNGTG 2 cut(s) 64, 136
Eco24I GRGCYC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 199, 300
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 2 cut(s) 40, 112
FaiI YATR 4 cut(s) 38, 110, 266, 387
FatI CATG 2 cut(s) 36, 108
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 4 cut(s) 44, 78, 116, 150
Fnu4HI GCNGC 3 cut(s) 56, 178, 197
FokI GGATG 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 56, 178, 197
GluI GCNGC 3 cut(s) 56, 178, 197
HaeIII GGCC 2 cut(s) 208, 220
Hin1II CATG 2 cut(s) 40, 112
HindIII AAGCTT 1 cut(s) 211
HphI GGTGA 2 cut(s) 88, 160
Hpy188I TCNGA 3 cut(s) 44, 116, 382
Hpy188III TCNNGA 5 cut(s) 37, 109, 250, 258, 318
Hpy99I CGWCG 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 205
Hsp92II CATG 2 cut(s) 40, 112
Ksp22I TGATCA 4 cut(s) 44, 78, 116, 150
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 319
MboII GAAGA 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 1 cut(s) 16
MnlI CCTC 4 cut(s) 198, 263, 269, 272
MseI TTAA 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 177, 205
NlaIII CATG 2 cut(s) 40, 112
PagI TCATGA 2 cut(s) 36, 108
PkrI GCNGC 3 cut(s) 57, 179, 198
Ple19I CGATCG 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PvuI CGATCG 1 cut(s) 243
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 3 cut(s) 56, 178, 197
ScaI AGTACT 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 29
SetI ASST 2 cut(s) 215, 236
SfaNI GCATC 1 cut(s) 319
Sse9I AATT 1 cut(s) 16
SsiI CCGC 3 cut(s) 53, 56, 196
StyD4I CCNGG 1 cut(s) 304
TaqI TCGA 6 cut(s) 5, 23, 163, 243, 257, 327
TasI AATT 1 cut(s) 16
TatI WGTACW 1 cut(s) 369
TauI GCSGC 2 cut(s) 58, 199
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.